TACC: Starting up job 4153614 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186332.02 Mb (on task= 243), Smallest = 185668.20 Mb (on task= 621), Average = 186011.72 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.88 Mb (on task= 378), Average = 191386.89 Mb Committed_AS: Largest = 5718.69 Mb (on task= 621), Smallest = 5054.87 Mb (on task= 243), Average = 5375.17 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5718.69 Mb (on task= 621), Smallest = 5054.87 Mb (on task= 243), Average = 5375.17 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 365), Average = 95257.25 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c208-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.1167 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_271.hdf5' contains: READIC: Type 0 (gas): 64095715 (tot= 64095715) masstab= 0 READIC: Type 1: 69984417 (tot= 69984417) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 22336 (tot= 22336) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_271.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.70793 sec, total size 6383.23 MB, corresponds to effective I/O rate of 1355.85 MB/sec READIC: Total number of particles : 134102468 INIT: Testing ID uniqueness... INIT: success. took=0.062287 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=28890, determination of top-level tree involved 5 iterations and took 0.465763 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=166 for nextra=75, reaching maximum imbalance of 1.104|1.1043 DOMAIN: combining multiple-domains took 0.0169957 sec DOMAIN: exchange of 70006753 particles DOMAIN: particle exchange done. (took 0.353676 sec) DOMAIN: domain decomposition done. (took in total 0.844032 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0464768 sec. INIT: Converting u -> entropy All.cf_a3inv=432.081 FOF: Begin to compute FoF group catalogue... (presently allocated=115.45 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.110772 sec =69054.2 NTopnodes=33017 NTopleaves=28890 FOF: Start linking particles (presently allocated=128.479 MB) FOF: linking of small cells took 0.00126256 sec FOF: local links done (took 0.10705 sec, avg-work=0.0955378, imbalance=1.11224). FOF: Marked=168658 out of the 69984417 primaries which are linked FOF: begin linking across processors (presently allocated=129.761 MB) FOF: have done 12244 cross links (processed 168658, took 0.00469377 sec) FOF: have done 2647 cross links (processed 80671, took 0.00386878 sec) FOF: have done 415 cross links (processed 10990, took 0.00329691 sec) FOF: have done 71 cross links (processed 1708, took 0.00307528 sec) FOF: have done 20 cross links (processed 316, took 0.00305252 sec) FOF: have done 1 cross links (processed 107, took 0.0029948 sec) FOF: have done 0 cross links (processed 3, took 0.00302514 sec) FOF: Local groups found. FOF: primary group finding took = 0.138471 sec FOF: Start finding nearest dm-particle (presently allocated=128.479 MB) FOF: fof-nearest iteration 1: need to repeat for 62364691 particles. (took = 0.0655006 sec) FOF: fof-nearest iteration 2: need to repeat for 53879857 particles. (took = 0.0741766 sec) FOF: fof-nearest iteration 3: need to repeat for 33042130 particles. (took = 0.0806936 sec) FOF: fof-nearest iteration 4: need to repeat for 12109640 particles. (took = 0.0616402 sec) FOF: fof-nearest iteration 5: need to repeat for 1791877 particles. (took = 0.0291195 sec) FOF: fof-nearest iteration 6: need to repeat for 51655 particles. (took = 0.00753501 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.324499 sec FOF: compiling local group data and catalogue took = 0.0169648 sec FOF: Total number of FOF groups with at least 32 particles: 1057658 FOF: Largest FOF group has 128 particles. FOF: Total number of particles in FOF groups: 134102468 FOF: group properties are now allocated.. (presently allocated=119.314 MB) FOF: computation of group properties took = 0.00659239 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.177305 sec FOF: Finished computing FoF groups. Complete work took 0.865975 sec (presently allocated=116.042 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.392 MB) GRAVTREE: Tree construction done. took 0.355793 sec =88563.5 NTopnodes=33017 NTopleaves=28890 tree-build-scalability=0.627769 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 123189415 particles. (took 0.582681 sec) SUBFIND: ngb iteration 2: need to repeat for 117547729 particles. (took 0.445555 sec) SUBFIND: ngb iteration 3: need to repeat for 112888390 particles. (took 0.372197 sec) SUBFIND: ngb iteration 4: need to repeat for 109442419 particles. (took 0.324828 sec) SUBFIND: ngb iteration 5: need to repeat for 106952459 particles. (took 0.303282 sec) SUBFIND: ngb iteration 6: need to repeat for 104919276 particles. (took 0.295745 sec) SUBFIND: ngb iteration 7: need to repeat for 102885214 particles. (took 0.295988 sec) SUBFIND: ngb iteration 8: need to repeat for 100744959 particles. (took 0.299631 sec) SUBFIND: ngb iteration 9: need to repeat for 98880834 particles. (took 0.305432 sec) SUBFIND: ngb iteration 10: need to repeat for 97610777 particles. (took 0.315858 sec) SUBFIND: ngb iteration 11: need to repeat for 96856872 particles. (took 0.328631 sec) SUBFIND: ngb iteration 12: need to repeat for 96138265 particles. (took 0.343209 sec) SUBFIND: ngb iteration 13: need to repeat for 92375039 particles. (took 0.3561 sec) SUBFIND: ngb iteration 14: need to repeat for 81771653 particles. (took 0.355415 sec) SUBFIND: ngb iteration 15: need to repeat for 67149034 particles. (took 0.323915 sec) SUBFIND: ngb iteration 16: need to repeat for 51880035 particles. (took 0.270746 sec) SUBFIND: ngb iteration 17: need to repeat for 38223736 particles. (took 0.212686 sec) SUBFIND: ngb iteration 18: need to repeat for 27021320 particles. (took 0.165029 sec) SUBFIND: ngb iteration 19: need to repeat for 18554382 particles. (took 0.124942 sec) SUBFIND: ngb iteration 20: need to repeat for 13174100 particles. (took 0.0912699 sec) SUBFIND: ngb iteration 21: need to repeat for 10525832 particles. (took 0.062901 sec) SUBFIND: ngb iteration 22: need to repeat for 9530438 particles. (took 0.0437237 sec) SUBFIND: ngb iteration 23: need to repeat for 9222818 particles. (took 0.0347815 sec) SUBFIND: ngb iteration 24: need to repeat for 9122132 particles. (took 0.0338845 sec) SUBFIND: ngb iteration 25: need to repeat for 9052827 particles. (took 0.0343888 sec) SUBFIND: ngb iteration 26: need to repeat for 8966553 particles. (took 0.0357083 sec) SUBFIND: ngb iteration 27: need to repeat for 8850283 particles. (took 0.0373483 sec) SUBFIND: ngb iteration 28: need to repeat for 8692130 particles. (took 0.0393254 sec) SUBFIND: ngb iteration 29: need to repeat for 8480723 particles. (took 0.0406282 sec) SUBFIND: ngb iteration 30: need to repeat for 8194610 particles. (took 0.0446871 sec) SUBFIND: ngb iteration 31: need to repeat for 7817153 particles. (took 0.0488986 sec) SUBFIND: ngb iteration 32: need to repeat for 7332868 particles. (took 0.0508689 sec) SUBFIND: ngb iteration 33: need to repeat for 6722361 particles. (took 0.0518764 sec) SUBFIND: ngb iteration 34: need to repeat for 5987596 particles. (took 0.0512906 sec) SUBFIND: ngb iteration 35: need to repeat for 5133037 particles. (took 0.0475977 sec) SUBFIND: ngb iteration 36: need to repeat for 4189200 particles. (took 0.0428819 sec) SUBFIND: ngb iteration 37: need to repeat for 3216248 particles. (took 0.0369169 sec) SUBFIND: ngb iteration 38: need to repeat for 2278892 particles. (took 0.0301125 sec) SUBFIND: ngb iteration 39: need to repeat for 1465280 particles. (took 0.0238005 sec) SUBFIND: ngb iteration 40: need to repeat for 836354 particles. (took 0.0176348 sec) SUBFIND: ngb iteration 41: need to repeat for 415460 particles. (took 0.0121477 sec) SUBFIND: ngb iteration 42: need to repeat for 174917 particles. (took 0.0081641 sec) SUBFIND: ngb iteration 43: need to repeat for 60088 particles. (took 0.00422805 sec) SUBFIND: ngb iteration 44: need to repeat for 17994 particles. (took 0.00213964 sec) SUBFIND: ngb iteration 45: need to repeat for 3912 particles. (took 0.00128091 sec) SUBFIND: ngb iteration 46: need to repeat for 754 particles. (took 0.00072613 sec) SUBFIND: ngb iteration 47: need to repeat for 43 particles. (took 0.000467317 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.95739 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134102468 particles, for threshold size factor 0.6) SUBFIND: The other 1057658 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00332226 sec SUBFIND: particle balance=1.10339 SUBFIND: subfind_exchange() took 0.366606 sec SUBFIND: particle balance for processing=1.0005 SUBFIND: subdomain decomposition took 0.0694545 sec SUBFIND: serial subfind subdomain decomposition took 0.0685696 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1633 took 23.7802 sec SUBFIND: root-task=0: Serial processing of halo 0 took 23.9491 SUBFIND: Processing overall took (total time=25.7293 sec) SUBFIND: 0 out of 5322 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344916 ALLOCATE: Changing to MaxPartSph = 164856 SUBFIND: subfind_exchange() (for return to original CPU) took 0.405193 sec TREE: Full tree construction for all particles. (presently allocated=106.954 MB) GRAVTREE: Tree construction done. took 0.984481 sec =88563.5 NTopnodes=33017 NTopleaves=28890 tree-build-scalability=0.627769 SUBFIND: SO iteration 1: need to repeat for 1057654 halo centers. (took 0.0202371 sec) SUBFIND: SO iteration 2: need to repeat for 1057654 halo centers. (took 0.018568 sec) SUBFIND: SO iteration 3: need to repeat for 1057654 halo centers. (took 0.0184624 sec) SUBFIND: SO iteration 4: need to repeat for 1057654 halo centers. (took 0.0181779 sec) SUBFIND: SO iteration 5: need to repeat for 1057654 halo centers. (took 0.0189219 sec) SUBFIND: SO iteration 6: need to repeat for 1057654 halo centers. (took 0.0191001 sec) SUBFIND: SO iteration 7: need to repeat for 1057654 halo centers. (took 0.0189024 sec) SUBFIND: SO iteration 8: need to repeat for 1057654 halo centers. (took 0.0192476 sec) SUBFIND: SO iteration 9: need to repeat for 1057654 halo centers. (took 0.0192121 sec) SUBFIND: SO iteration 10: need to repeat for 1057654 halo centers. (took 0.0189409 sec) SUBFIND: SO iteration 11: need to repeat for 1057654 halo centers. (took 0.0192559 sec) SUBFIND: SO iteration 12: need to repeat for 1057654 halo centers. (took 0.0185963 sec) SUBFIND: SO iteration 13: need to repeat for 1057654 halo centers. (took 0.0187134 sec) SUBFIND: SO iteration 14: need to repeat for 1057654 halo centers. (took 0.0186514 sec) SUBFIND: SO iteration 15: need to repeat for 1057654 halo centers. (took 0.0189804 sec) SUBFIND: SO iteration 16: need to repeat for 34397 halo centers. (took 0.0183983 sec) SUBFIND: SO iteration 17: need to repeat for 345 halo centers. (took 0.00341906 sec) SUBFIND: SO iteration 18: need to repeat for 14 halo centers. (took 0.000249391 sec) SUBFIND: SO iteration 1: need to repeat for 1057654 halo centers. (took 0.0183635 sec) SUBFIND: SO iteration 2: need to repeat for 1057654 halo centers. (took 0.017677 sec) SUBFIND: SO iteration 3: need to repeat for 1057654 halo centers. (took 0.017988 sec) SUBFIND: SO iteration 4: need to repeat for 1057654 halo centers. (took 0.0179812 sec) SUBFIND: SO iteration 5: need to repeat for 1057654 halo centers. (took 0.0182099 sec) SUBFIND: SO iteration 6: need to repeat for 1057654 halo centers. (took 0.0179706 sec) SUBFIND: SO iteration 7: need to repeat for 1057654 halo centers. (took 0.0180022 sec) SUBFIND: SO iteration 8: need to repeat for 1057654 halo centers. (took 0.0180553 sec) SUBFIND: SO iteration 9: need to repeat for 1057654 halo centers. (took 0.0180086 sec) SUBFIND: SO iteration 10: need to repeat for 1057654 halo centers. (took 0.0180492 sec) SUBFIND: SO iteration 11: need to repeat for 1057654 halo centers. (took 0.017985 sec) SUBFIND: SO iteration 12: need to repeat for 1057654 halo centers. (took 0.0180734 sec) SUBFIND: SO iteration 13: need to repeat for 1057654 halo centers. (took 0.017951 sec) SUBFIND: SO iteration 14: need to repeat for 1057654 halo centers. (took 0.0179736 sec) SUBFIND: SO iteration 15: need to repeat for 1057654 halo centers. (took 0.0179541 sec) SUBFIND: SO iteration 16: need to repeat for 18784 halo centers. (took 0.017729 sec) SUBFIND: SO iteration 17: need to repeat for 166 halo centers. (took 0.00205656 sec) SUBFIND: SO iteration 18: need to repeat for 8 halo centers. (took 0.000232011 sec) SUBFIND: SO iteration 1: need to repeat for 1057654 halo centers. (took 0.0180958 sec) SUBFIND: SO iteration 2: need to repeat for 1057654 halo centers. (took 0.01833 sec) SUBFIND: SO iteration 3: need to repeat for 1057654 halo centers. (took 0.0184155 sec) SUBFIND: SO iteration 4: need to repeat for 1057654 halo centers. (took 0.0181512 sec) SUBFIND: SO iteration 5: need to repeat for 1057654 halo centers. (took 0.0181254 sec) SUBFIND: SO iteration 6: need to repeat for 1057654 halo centers. (took 0.0180707 sec) SUBFIND: SO iteration 7: need to repeat for 1057654 halo centers. (took 0.0180586 sec) SUBFIND: SO iteration 8: need to repeat for 1057654 halo centers. (took 0.0180177 sec) SUBFIND: SO iteration 9: need to repeat for 1057654 halo centers. (took 0.0180613 sec) SUBFIND: SO iteration 10: need to repeat for 1057654 halo centers. (took 0.0180297 sec) SUBFIND: SO iteration 11: need to repeat for 1057654 halo centers. (took 0.018075 sec) SUBFIND: SO iteration 12: need to repeat for 1057654 halo centers. (took 0.0181263 sec) SUBFIND: SO iteration 13: need to repeat for 1057654 halo centers. (took 0.0180169 sec) SUBFIND: SO iteration 14: need to repeat for 1057654 halo centers. (took 0.0181507 sec) SUBFIND: SO iteration 15: need to repeat for 1057654 halo centers. (took 0.0180167 sec) SUBFIND: SO iteration 16: need to repeat for 35377 halo centers. (took 0.0177845 sec) SUBFIND: SO iteration 17: need to repeat for 377 halo centers. (took 0.00334755 sec) SUBFIND: SO iteration 18: need to repeat for 14 halo centers. (took 0.000243111 sec) SUBFIND: SO iteration 1: need to repeat for 1057654 halo centers. (took 0.0180371 sec) SUBFIND: SO iteration 2: need to repeat for 1057654 halo centers. (took 0.0183737 sec) SUBFIND: SO iteration 3: need to repeat for 1057654 halo centers. (took 0.0179635 sec) SUBFIND: SO iteration 4: need to repeat for 1057654 halo centers. (took 0.0181937 sec) SUBFIND: SO iteration 5: need to repeat for 1057654 halo centers. (took 0.0181351 sec) SUBFIND: SO iteration 6: need to repeat for 1057654 halo centers. (took 0.0182232 sec) SUBFIND: SO iteration 7: need to repeat for 1057654 halo centers. (took 0.0183338 sec) SUBFIND: SO iteration 8: need to repeat for 1057654 halo centers. (took 0.018226 sec) SUBFIND: SO iteration 9: need to repeat for 1057654 halo centers. (took 0.0183526 sec) SUBFIND: SO iteration 10: need to repeat for 1057654 halo centers. (took 0.018222 sec) SUBFIND: SO iteration 11: need to repeat for 1057654 halo centers. (took 0.0182171 sec) SUBFIND: SO iteration 12: need to repeat for 1057654 halo centers. (took 0.0181596 sec) SUBFIND: SO iteration 13: need to repeat for 1057654 halo centers. (took 0.0183466 sec) SUBFIND: SO iteration 14: need to repeat for 1057654 halo centers. (took 0.0182189 sec) SUBFIND: SO iteration 15: need to repeat for 1057654 halo centers. (took 0.0183113 sec) SUBFIND: SO iteration 16: need to repeat for 676426 halo centers. (took 0.018301 sec) SUBFIND: SO iteration 17: need to repeat for 39409 halo centers. (took 0.0145377 sec) SUBFIND: SO iteration 18: need to repeat for 2261 halo centers. (took 0.003489 sec) SUBFIND: SO iteration 19: need to repeat for 2 halo centers. (took 0.000424275 sec) SUBFIND: determining spherical overdensity masses took 1.20286 sec SUBFIND: assembled and ordered groups and subhalos (took 0.189689 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_271' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.85881 sec, total size 396.466 MB, corresponds to effective I/O rate of 138.682 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.86032 sec SUBFIND: Finished with SUBFIND. (total time=39.1258 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1062857 SUBFIND: Largest subhalo has 128 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134101619 FOF: preparing output order of particles took 1.35729 sec SNAPSHOT: writing snapshot file #271 @ time 0.132275 ... SNAPSHOT: writing snapshot file: 'output/snap_271' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_271.hdf5' to 'output/bak-snap_271.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.42389 sec, total size 5337.56 MB, corresponds to effective I/O rate of 566.386 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 226 (rank 226 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 346 (rank 346 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 342 (rank 342 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 353 (rank 353 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.