TACC: Starting up job 4243129 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186353.93 Mb (on task= 783), Smallest = 186204.13 Mb (on task= 81), Average = 186283.56 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5182.76 Mb (on task= 81), Smallest = 5032.96 Mb (on task= 783), Average = 5103.32 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5182.76 Mb (on task= 81), Smallest = 5032.96 Mb (on task= 783), Average = 5103.32 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 16), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-004.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.9708 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 57686275 (tot= 57686275) masstab= 0 READIC: Type 1: 76310397 (tot= 76310397) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 785 (tot= 785) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 6.25973 sec, total size 6353.97 MB, corresponds to effective I/O rate of 1015.06 MB/sec READIC: Total number of particles : 133997457 INIT: Testing ID uniqueness... INIT: success. took=0.0636992 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: NTopleaves=21785, determination of top-level tree involved 6 iterations and took 0.349832 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=196 for nextra=51, reaching maximum imbalance of 1.13139|1.13139 DOMAIN: combining multiple-domains took 0.0146541 sec DOMAIN: exchange of 76311182 particles DOMAIN: particle exchange done. (took 0.185228 sec) DOMAIN: domain decomposition done. (took in total 0.555357 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0329566 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=84.1429 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0932122 sec =71542.6 NTopnodes=24897 NTopleaves=21785 FOF: Start linking particles (presently allocated=96.8605 MB) FOF: linking of small cells took 0.000835555 sec FOF: local links done (took 0.0752223 sec, avg-work=0.0652463, imbalance=1.14146). FOF: Marked=235003 out of the 76310397 primaries which are linked FOF: begin linking across processors (presently allocated=97.8835 MB) FOF: have done 26893 cross links (processed 235003, took 0.0042115 sec) FOF: have done 4760 cross links (processed 109158, took 0.0033777 sec) FOF: have done 663 cross links (processed 14818, took 0.0027246 sec) FOF: have done 79 cross links (processed 2065, took 0.00245237 sec) FOF: have done 6 cross links (processed 223, took 0.00240654 sec) FOF: have done 0 cross links (processed 16, took 0.00238031 sec) FOF: Local groups found. FOF: primary group finding took = 0.0983357 sec FOF: Start finding nearest dm-particle (presently allocated=96.8605 MB) FOF: fof-nearest iteration 1: need to repeat for 56941415 particles. (took = 0.044253 sec) FOF: fof-nearest iteration 2: need to repeat for 53227994 particles. (took = 0.045952 sec) FOF: fof-nearest iteration 3: need to repeat for 41662583 particles. (took = 0.0490036 sec) FOF: fof-nearest iteration 4: need to repeat for 22653725 particles. (took = 0.0449839 sec) FOF: fof-nearest iteration 5: need to repeat for 5513213 particles. (took = 0.0299741 sec) FOF: fof-nearest iteration 6: need to repeat for 171426 particles. (took = 0.0107515 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.229719 sec FOF: compiling local group data and catalogue took = 0.0141719 sec FOF: Total number of FOF groups with at least 32 particles: 4060525 FOF: Largest FOF group has 66 particles. FOF: Total number of particles in FOF groups: 133997457 FOF: group properties are now allocated.. (presently allocated=88.3089 MB) FOF: computation of group properties took = 0.00970585 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.273342 sec FOF: Finished computing FoF groups. Complete work took 0.854323 sec (presently allocated=85.8303 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.8533 MB) GRAVTREE: Tree construction done. took 0.219903 sec =87301.5 NTopnodes=24897 NTopleaves=21785 tree-build-scalability=0.715146 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 131949379 particles. (took 0.455718 sec) SUBFIND: ngb iteration 2: need to repeat for 128979028 particles. (took 0.385814 sec) SUBFIND: ngb iteration 3: need to repeat for 125395027 particles. (took 0.356596 sec) SUBFIND: ngb iteration 4: need to repeat for 121138114 particles. (took 0.329053 sec) SUBFIND: ngb iteration 5: need to repeat for 115367969 particles. (took 0.313637 sec) SUBFIND: ngb iteration 6: need to repeat for 106065501 particles. (took 0.29701 sec) SUBFIND: ngb iteration 7: need to repeat for 91296336 particles. (took 0.267017 sec) SUBFIND: ngb iteration 8: need to repeat for 74914576 particles. (took 0.216203 sec) SUBFIND: ngb iteration 9: need to repeat for 64139066 particles. (took 0.154732 sec) SUBFIND: ngb iteration 10: need to repeat for 59531842 particles. (took 0.110906 sec) SUBFIND: ngb iteration 11: need to repeat for 58112711 particles. (took 0.0917613 sec) SUBFIND: ngb iteration 12: need to repeat for 57768562 particles. (took 0.0867794 sec) SUBFIND: ngb iteration 13: need to repeat for 57701075 particles. (took 0.0867949 sec) SUBFIND: ngb iteration 14: need to repeat for 57688888 particles. (took 0.0867574 sec) SUBFIND: ngb iteration 15: need to repeat for 57686736 particles. (took 0.0854875 sec) SUBFIND: ngb iteration 16: need to repeat for 57686333 particles. (took 0.0824487 sec) SUBFIND: ngb iteration 17: need to repeat for 57686261 particles. (took 0.0785085 sec) SUBFIND: ngb iteration 18: need to repeat for 57686161 particles. (took 0.0735035 sec) SUBFIND: ngb iteration 19: need to repeat for 57685792 particles. (took 0.0695591 sec) SUBFIND: ngb iteration 20: need to repeat for 57684696 particles. (took 0.0683871 sec) SUBFIND: ngb iteration 21: need to repeat for 57681849 particles. (took 0.0689634 sec) SUBFIND: ngb iteration 22: need to repeat for 57674445 particles. (took 0.0711581 sec) SUBFIND: ngb iteration 23: need to repeat for 57655040 particles. (took 0.0740603 sec) SUBFIND: ngb iteration 24: need to repeat for 57604844 particles. (took 0.0783265 sec) SUBFIND: ngb iteration 25: need to repeat for 57474830 particles. (took 0.084395 sec) SUBFIND: ngb iteration 26: need to repeat for 57159025 particles. (took 0.0931546 sec) SUBFIND: ngb iteration 27: need to repeat for 56481998 particles. (took 0.106103 sec) SUBFIND: ngb iteration 28: need to repeat for 55222697 particles. (took 0.125337 sec) SUBFIND: ngb iteration 29: need to repeat for 53219899 particles. (took 0.149482 sec) SUBFIND: ngb iteration 30: need to repeat for 50408306 particles. (took 0.175741 sec) SUBFIND: ngb iteration 31: need to repeat for 46780863 particles. (took 0.197234 sec) SUBFIND: ngb iteration 32: need to repeat for 42248257 particles. (took 0.208059 sec) SUBFIND: ngb iteration 33: need to repeat for 36660435 particles. (took 0.200459 sec) SUBFIND: ngb iteration 34: need to repeat for 30077667 particles. (took 0.176906 sec) SUBFIND: ngb iteration 35: need to repeat for 22880005 particles. (took 0.149713 sec) SUBFIND: ngb iteration 36: need to repeat for 15818975 particles. (took 0.120495 sec) SUBFIND: ngb iteration 37: need to repeat for 9714784 particles. (took 0.0906761 sec) SUBFIND: ngb iteration 38: need to repeat for 5168493 particles. (took 0.0644323 sec) SUBFIND: ngb iteration 39: need to repeat for 2322895 particles. (took 0.0412377 sec) SUBFIND: ngb iteration 40: need to repeat for 853256 particles. (took 0.0230748 sec) SUBFIND: ngb iteration 41: need to repeat for 248509 particles. (took 0.0113714 sec) SUBFIND: ngb iteration 42: need to repeat for 55194 particles. (took 0.0051344 sec) SUBFIND: ngb iteration 43: need to repeat for 8588 particles. (took 0.00193862 sec) SUBFIND: ngb iteration 44: need to repeat for 952 particles. (took 0.000698531 sec) SUBFIND: ngb iteration 45: need to repeat for 61 particles. (took 0.000317607 sec) SUBFIND: ngb iteration 46: need to repeat for 2 particles. (took 0.00025581 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.02004 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997457 particles, for threshold size factor 0.6) SUBFIND: The other 4060525 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00659521 sec SUBFIND: particle balance=1.13139 SUBFIND: subfind_exchange() took 0.230855 sec SUBFIND: particle balance for processing=1.00028 SUBFIND: subdomain decomposition took 0.051696 sec SUBFIND: serial subfind subdomain decomposition took 0.0511915 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=4700 took 46.3928 sec SUBFIND: root-task=0: Serial processing of halo 0 took 46.5182 SUBFIND: Processing overall took (total time=47.9087 sec) SUBFIND: 0 out of 0 decisions, fraction -nan, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258485 ALLOCATE: Changing to MaxPartSph = 111278 SUBFIND: subfind_exchange() (for return to original CPU) took 0.256317 sec TREE: Full tree construction for all particles. (presently allocated=78.8535 MB) GRAVTREE: Tree construction done. took 0.812953 sec =87301.5 NTopnodes=24897 NTopleaves=21785 tree-build-scalability=0.715146 SUBFIND: SO iteration 1: need to repeat for 4058641 halo centers. (took 0.0293934 sec) SUBFIND: SO iteration 2: need to repeat for 4058641 halo centers. (took 0.0259534 sec) SUBFIND: SO iteration 3: need to repeat for 4058641 halo centers. (took 0.0271748 sec) SUBFIND: SO iteration 4: need to repeat for 4058641 halo centers. (took 0.0275 sec) SUBFIND: SO iteration 5: need to repeat for 4058641 halo centers. (took 0.0262398 sec) SUBFIND: SO iteration 6: need to repeat for 4058641 halo centers. (took 0.0263634 sec) SUBFIND: SO iteration 7: need to repeat for 4058641 halo centers. (took 0.0261805 sec) SUBFIND: SO iteration 8: need to repeat for 4058641 halo centers. (took 0.0262022 sec) SUBFIND: SO iteration 9: need to repeat for 4058641 halo centers. (took 0.026216 sec) SUBFIND: SO iteration 10: need to repeat for 4058641 halo centers. (took 0.026234 sec) SUBFIND: SO iteration 11: need to repeat for 4058641 halo centers. (took 0.0262269 sec) SUBFIND: SO iteration 12: need to repeat for 4058641 halo centers. (took 0.0262168 sec) SUBFIND: SO iteration 13: need to repeat for 4058641 halo centers. (took 0.0261937 sec) SUBFIND: SO iteration 14: need to repeat for 4058641 halo centers. (took 0.0262989 sec) SUBFIND: SO iteration 15: need to repeat for 4058641 halo centers. (took 0.026205 sec) SUBFIND: SO iteration 16: need to repeat for 676860 halo centers. (took 0.0255752 sec) SUBFIND: SO iteration 17: need to repeat for 27288 halo centers. (took 0.0115452 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.00181796 sec) SUBFIND: SO iteration 1: need to repeat for 4058641 halo centers. (took 0.0268545 sec) SUBFIND: SO iteration 2: need to repeat for 4058641 halo centers. (took 0.0270769 sec) SUBFIND: SO iteration 3: need to repeat for 4058641 halo centers. (took 0.0269975 sec) SUBFIND: SO iteration 4: need to repeat for 4058641 halo centers. (took 0.027556 sec) SUBFIND: SO iteration 5: need to repeat for 4058641 halo centers. (took 0.0272594 sec) SUBFIND: SO iteration 6: need to repeat for 4058641 halo centers. (took 0.0275716 sec) SUBFIND: SO iteration 7: need to repeat for 4058641 halo centers. (took 0.0276331 sec) SUBFIND: SO iteration 8: need to repeat for 4058641 halo centers. (took 0.0270017 sec) SUBFIND: SO iteration 9: need to repeat for 4058641 halo centers. (took 0.0266758 sec) SUBFIND: SO iteration 10: need to repeat for 4058641 halo centers. (took 0.0262758 sec) SUBFIND: SO iteration 11: need to repeat for 4058641 halo centers. (took 0.0265635 sec) SUBFIND: SO iteration 12: need to repeat for 4058641 halo centers. (took 0.0274913 sec) SUBFIND: SO iteration 13: need to repeat for 4058641 halo centers. (took 0.0263347 sec) SUBFIND: SO iteration 14: need to repeat for 4058641 halo centers. (took 0.0262667 sec) SUBFIND: SO iteration 15: need to repeat for 4058640 halo centers. (took 0.0262863 sec) SUBFIND: SO iteration 16: need to repeat for 423146 halo centers. (took 0.0254959 sec) SUBFIND: SO iteration 17: need to repeat for 16475 halo centers. (took 0.00965649 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.00119567 sec) SUBFIND: SO iteration 1: need to repeat for 4058641 halo centers. (took 0.026562 sec) SUBFIND: SO iteration 2: need to repeat for 4058641 halo centers. (took 0.0262388 sec) SUBFIND: SO iteration 3: need to repeat for 4058641 halo centers. (took 0.02676 sec) SUBFIND: SO iteration 4: need to repeat for 4058641 halo centers. (took 0.0261456 sec) SUBFIND: SO iteration 5: need to repeat for 4058641 halo centers. (took 0.0262653 sec) SUBFIND: SO iteration 6: need to repeat for 4058641 halo centers. (took 0.0262665 sec) SUBFIND: SO iteration 7: need to repeat for 4058641 halo centers. (took 0.0261692 sec) SUBFIND: SO iteration 8: need to repeat for 4058641 halo centers. (took 0.0261785 sec) SUBFIND: SO iteration 9: need to repeat for 4058641 halo centers. (took 0.0261708 sec) SUBFIND: SO iteration 10: need to repeat for 4058641 halo centers. (took 0.0261787 sec) SUBFIND: SO iteration 11: need to repeat for 4058641 halo centers. (took 0.0261451 sec) SUBFIND: SO iteration 12: need to repeat for 4058641 halo centers. (took 0.0266769 sec) SUBFIND: SO iteration 13: need to repeat for 4058641 halo centers. (took 0.026234 sec) SUBFIND: SO iteration 14: need to repeat for 4058641 halo centers. (took 0.0261118 sec) SUBFIND: SO iteration 15: need to repeat for 4058641 halo centers. (took 0.0261537 sec) SUBFIND: SO iteration 16: need to repeat for 692347 halo centers. (took 0.0265355 sec) SUBFIND: SO iteration 17: need to repeat for 29515 halo centers. (took 0.01133 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.00186167 sec) SUBFIND: SO iteration 1: need to repeat for 4058641 halo centers. (took 0.0264828 sec) SUBFIND: SO iteration 2: need to repeat for 4058641 halo centers. (took 0.0258272 sec) SUBFIND: SO iteration 3: need to repeat for 4058641 halo centers. (took 0.0248412 sec) SUBFIND: SO iteration 4: need to repeat for 4058641 halo centers. (took 0.0253091 sec) SUBFIND: SO iteration 5: need to repeat for 4058641 halo centers. (took 0.025348 sec) SUBFIND: SO iteration 6: need to repeat for 4058641 halo centers. (took 0.0253295 sec) SUBFIND: SO iteration 7: need to repeat for 4058641 halo centers. (took 0.0253675 sec) SUBFIND: SO iteration 8: need to repeat for 4058641 halo centers. (took 0.0256074 sec) SUBFIND: SO iteration 9: need to repeat for 4058641 halo centers. (took 0.0253259 sec) SUBFIND: SO iteration 10: need to repeat for 4058641 halo centers. (took 0.0252956 sec) SUBFIND: SO iteration 11: need to repeat for 4058641 halo centers. (took 0.0253804 sec) SUBFIND: SO iteration 12: need to repeat for 4058641 halo centers. (took 0.0253689 sec) SUBFIND: SO iteration 13: need to repeat for 4058641 halo centers. (took 0.0253226 sec) SUBFIND: SO iteration 14: need to repeat for 4058641 halo centers. (took 0.0253345 sec) SUBFIND: SO iteration 15: need to repeat for 4058641 halo centers. (took 0.0253324 sec) SUBFIND: SO iteration 16: need to repeat for 3764978 halo centers. (took 0.0253322 sec) SUBFIND: SO iteration 17: need to repeat for 557342 halo centers. (took 0.0234858 sec) SUBFIND: SO iteration 18: need to repeat for 11062 halo centers. (took 0.0102556 sec) SUBFIND: determining spherical overdensity masses took 1.75922 sec SUBFIND: assembled and ordered groups and subhalos (took 0.269249 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.44861 sec, total size 1517.6 MB, corresponds to effective I/O rate of 278.53 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.45039 sec SUBFIND: Finished with SUBFIND. (total time=62.9777 sec) SUBFIND: Total number of subhalos with at least 20 particles: 4058641 SUBFIND: Largest subhalo has 66 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133933729 FOF: preparing output order of particles took 0.967823 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 10.3239 sec, total size 5260.6 MB, corresponds to effective I/O rate of 509.558 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 331 (rank 331 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 330 (rank 330 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.