TACC: Starting up job 4242146 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186453.96 Mb (on task= 108), Smallest = 186412.04 Mb (on task= 0), Average = 186437.35 Mb Total Mem: Largest = 191515.35 Mb (on task= 297), Smallest = 191515.33 Mb (on task= 27), Average = 191515.34 Mb Committed_AS: Largest = 5103.30 Mb (on task= 0), Smallest = 5061.38 Mb (on task= 108), Average = 5077.98 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5103.30 Mb (on task= 0), Smallest = 5061.38 Mb (on task= 108), Average = 5077.98 Mb avail /dev/shm: Largest = 95321.54 Mb (on task= 298), Smallest = 95321.47 Mb (on task= 48), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c152-032.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.9995 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 57837779 (tot= 57837779) masstab= 0 READIC: Type 1: 76158970 (tot= 76158970) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 723 (tot= 723) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 6.21194 sec, total size 6354.55 MB, corresponds to effective I/O rate of 1022.96 MB/sec READIC: Total number of particles : 133997472 INIT: Testing ID uniqueness... INIT: success. took=0.0807717 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=17795, determination of top-level tree involved 5 iterations and took 0.652124 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=174 for nextra=62, reaching maximum imbalance of 1.11005|1.11172 DOMAIN: combining multiple-domains took 0.0137113 sec DOMAIN: exchange of 76159693 particles DOMAIN: particle exchange done. (took 0.339149 sec) DOMAIN: domain decomposition done. (took in total 1.01561 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0678699 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=167.952 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0941852 sec =110761 NTopnodes=20337 NTopleaves=17795 FOF: Start linking particles (presently allocated=191.323 MB) FOF: linking of small cells took 0.00226595 sec FOF: local links done (took 0.147598 sec, avg-work=0.131435, imbalance=1.1111). FOF: Marked=182056 out of the 76158970 primaries which are linked FOF: begin linking across processors (presently allocated=193.26 MB) FOF: have done 20257 cross links (processed 182056, took 0.00666274 sec) FOF: have done 3614 cross links (processed 84949, took 0.00601196 sec) FOF: have done 482 cross links (processed 11412, took 0.00489002 sec) FOF: have done 57 cross links (processed 1488, took 0.00456358 sec) FOF: have done 5 cross links (processed 161, took 0.00446062 sec) FOF: have done 0 cross links (processed 15, took 0.00444606 sec) FOF: Local groups found. FOF: primary group finding took = 0.190381 sec FOF: Start finding nearest dm-particle (presently allocated=191.323 MB) FOF: fof-nearest iteration 1: need to repeat for 57069213 particles. (took = 0.0843387 sec) FOF: fof-nearest iteration 2: need to repeat for 53247784 particles. (took = 0.0901905 sec) FOF: fof-nearest iteration 3: need to repeat for 41438744 particles. (took = 0.0961454 sec) FOF: fof-nearest iteration 4: need to repeat for 22239277 particles. (took = 0.0881722 sec) FOF: fof-nearest iteration 5: need to repeat for 5225014 particles. (took = 0.0571846 sec) FOF: fof-nearest iteration 6: need to repeat for 155758 particles. (took = 0.0193271 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.443634 sec FOF: compiling local group data and catalogue took = 0.0286135 sec FOF: Total number of FOF groups with at least 32 particles: 3722148 FOF: Largest FOF group has 72 particles. FOF: Total number of particles in FOF groups: 133997472 FOF: group properties are now allocated.. (presently allocated=175.988 MB) FOF: computation of group properties took = 0.0199215 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.154229 sec FOF: Finished computing FoF groups. Complete work took 1.02077 sec (presently allocated=171.038 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=181.295 MB) GRAVTREE: Tree construction done. took 0.394211 sec =141870 NTopnodes=20337 NTopleaves=17795 tree-build-scalability=0.856983 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 127227209 particles. (took 0.878037 sec) SUBFIND: ngb iteration 2: need to repeat for 118388048 particles. (took 0.702566 sec) SUBFIND: ngb iteration 3: need to repeat for 109378600 particles. (took 0.593605 sec) SUBFIND: ngb iteration 4: need to repeat for 101271566 particles. (took 0.507249 sec) SUBFIND: ngb iteration 5: need to repeat for 94116582 particles. (took 0.447906 sec) SUBFIND: ngb iteration 6: need to repeat for 86710976 particles. (took 0.405115 sec) SUBFIND: ngb iteration 7: need to repeat for 77601570 particles. (took 0.360442 sec) SUBFIND: ngb iteration 8: need to repeat for 68354282 particles. (took 0.301705 sec) SUBFIND: ngb iteration 9: need to repeat for 62120415 particles. (took 0.238121 sec) SUBFIND: ngb iteration 10: need to repeat for 59224751 particles. (took 0.195159 sec) SUBFIND: ngb iteration 11: need to repeat for 58214770 particles. (took 0.177688 sec) SUBFIND: ngb iteration 12: need to repeat for 57928465 particles. (took 0.174649 sec) SUBFIND: ngb iteration 13: need to repeat for 57858279 particles. (took 0.176897 sec) SUBFIND: ngb iteration 14: need to repeat for 57842420 particles. (took 0.177704 sec) SUBFIND: ngb iteration 15: need to repeat for 57838775 particles. (took 0.174174 sec) SUBFIND: ngb iteration 16: need to repeat for 57837989 particles. (took 0.167804 sec) SUBFIND: ngb iteration 17: need to repeat for 57837723 particles. (took 0.15841 sec) SUBFIND: ngb iteration 18: need to repeat for 57837123 particles. (took 0.147191 sec) SUBFIND: ngb iteration 19: need to repeat for 57835513 particles. (took 0.138563 sec) SUBFIND: ngb iteration 20: need to repeat for 57831251 particles. (took 0.13476 sec) SUBFIND: ngb iteration 21: need to repeat for 57821169 particles. (took 0.136022 sec) SUBFIND: ngb iteration 22: need to repeat for 57798350 particles. (took 0.138626 sec) SUBFIND: ngb iteration 23: need to repeat for 57746245 particles. (took 0.143661 sec) SUBFIND: ngb iteration 24: need to repeat for 57622394 particles. (took 0.150605 sec) SUBFIND: ngb iteration 25: need to repeat for 57332773 particles. (took 0.160709 sec) SUBFIND: ngb iteration 26: need to repeat for 56697309 particles. (took 0.174581 sec) SUBFIND: ngb iteration 27: need to repeat for 55379180 particles. (took 0.195881 sec) SUBFIND: ngb iteration 28: need to repeat for 52954564 particles. (took 0.222883 sec) SUBFIND: ngb iteration 29: need to repeat for 49090164 particles. (took 0.256283 sec) SUBFIND: ngb iteration 30: need to repeat for 43850089 particles. (took 0.290511 sec) SUBFIND: ngb iteration 31: need to repeat for 37858135 particles. (took 0.313593 sec) SUBFIND: ngb iteration 32: need to repeat for 31772121 particles. (took 0.311616 sec) SUBFIND: ngb iteration 33: need to repeat for 25859639 particles. (took 0.285507 sec) SUBFIND: ngb iteration 34: need to repeat for 20081107 particles. (took 0.242864 sec) SUBFIND: ngb iteration 35: need to repeat for 14592442 particles. (took 0.193526 sec) SUBFIND: ngb iteration 36: need to repeat for 9720602 particles. (took 0.148134 sec) SUBFIND: ngb iteration 37: need to repeat for 5815698 particles. (took 0.106848 sec) SUBFIND: ngb iteration 38: need to repeat for 3047831 particles. (took 0.0718494 sec) SUBFIND: ngb iteration 39: need to repeat for 1365829 particles. (took 0.0432649 sec) SUBFIND: ngb iteration 40: need to repeat for 512121 particles. (took 0.0238465 sec) SUBFIND: ngb iteration 41: need to repeat for 156276 particles. (took 0.0119735 sec) SUBFIND: ngb iteration 42: need to repeat for 37162 particles. (took 0.00543585 sec) SUBFIND: ngb iteration 43: need to repeat for 6817 particles. (took 0.00225534 sec) SUBFIND: ngb iteration 44: need to repeat for 893 particles. (took 0.000730652 sec) SUBFIND: ngb iteration 45: need to repeat for 118 particles. (took 0.000257339 sec) SUBFIND: ngb iteration 46: need to repeat for 8 particles. (took 0.000185218 sec) SUBFIND: ngb iteration 47: need to repeat for 1 particles. (took 0.000163198 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 9.89571 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997472 particles, for threshold size factor 0.6) SUBFIND: The other 3722148 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0103134 sec SUBFIND: particle balance=1.11005 SUBFIND: subfind_exchange() took 0.449686 sec SUBFIND: particle balance for processing=1.00022 SUBFIND: subdomain decomposition took 0.104911 sec SUBFIND: serial subfind subdomain decomposition took 0.103589 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=8617 took 205.507 sec SUBFIND: root-task=0: Serial processing of halo 0 took 205.761 SUBFIND: Processing overall took (total time=207.342 sec) SUBFIND: 0 out of 1 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516966 ALLOCATE: Changing to MaxPartSph = 223140 SUBFIND: subfind_exchange() (for return to original CPU) took 0.50029 sec TREE: Full tree construction for all particles. (presently allocated=157.084 MB) GRAVTREE: Tree construction done. took 1.53211 sec =141870 NTopnodes=20337 NTopleaves=17795 tree-build-scalability=0.856983 SUBFIND: SO iteration 1: need to repeat for 3720811 halo centers. (took 0.0451306 sec) SUBFIND: SO iteration 2: need to repeat for 3720811 halo centers. (took 0.0363276 sec) SUBFIND: SO iteration 3: need to repeat for 3720811 halo centers. (took 0.0370445 sec) SUBFIND: SO iteration 4: need to repeat for 3720811 halo centers. (took 0.0368895 sec) SUBFIND: SO iteration 5: need to repeat for 3720811 halo centers. (took 0.0369145 sec) SUBFIND: SO iteration 6: need to repeat for 3720811 halo centers. (took 0.0369619 sec) SUBFIND: SO iteration 7: need to repeat for 3720811 halo centers. (took 0.0375325 sec) SUBFIND: SO iteration 8: need to repeat for 3720811 halo centers. (took 0.0368137 sec) SUBFIND: SO iteration 9: need to repeat for 3720811 halo centers. (took 0.0375437 sec) SUBFIND: SO iteration 10: need to repeat for 3720811 halo centers. (took 0.0370647 sec) SUBFIND: SO iteration 11: need to repeat for 3720811 halo centers. (took 0.0370218 sec) SUBFIND: SO iteration 12: need to repeat for 3720811 halo centers. (took 0.0369181 sec) SUBFIND: SO iteration 13: need to repeat for 3720811 halo centers. (took 0.0369025 sec) SUBFIND: SO iteration 14: need to repeat for 3720811 halo centers. (took 0.0368572 sec) SUBFIND: SO iteration 15: need to repeat for 3720811 halo centers. (took 0.0367607 sec) SUBFIND: SO iteration 16: need to repeat for 566190 halo centers. (took 0.0357088 sec) SUBFIND: SO iteration 17: need to repeat for 17202 halo centers. (took 0.00967443 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00186055 sec) SUBFIND: SO iteration 1: need to repeat for 3720811 halo centers. (took 0.0374949 sec) SUBFIND: SO iteration 2: need to repeat for 3720811 halo centers. (took 0.0360046 sec) SUBFIND: SO iteration 3: need to repeat for 3720811 halo centers. (took 0.0368497 sec) SUBFIND: SO iteration 4: need to repeat for 3720811 halo centers. (took 0.0368634 sec) SUBFIND: SO iteration 5: need to repeat for 3720811 halo centers. (took 0.0368336 sec) SUBFIND: SO iteration 6: need to repeat for 3720811 halo centers. (took 0.0369452 sec) SUBFIND: SO iteration 7: need to repeat for 3720811 halo centers. (took 0.036871 sec) SUBFIND: SO iteration 8: need to repeat for 3720811 halo centers. (took 0.0369264 sec) SUBFIND: SO iteration 9: need to repeat for 3720811 halo centers. (took 0.0368608 sec) SUBFIND: SO iteration 10: need to repeat for 3720811 halo centers. (took 0.0371509 sec) SUBFIND: SO iteration 11: need to repeat for 3720811 halo centers. (took 0.0368282 sec) SUBFIND: SO iteration 12: need to repeat for 3720811 halo centers. (took 0.0368708 sec) SUBFIND: SO iteration 13: need to repeat for 3720811 halo centers. (took 0.0368779 sec) SUBFIND: SO iteration 14: need to repeat for 3720811 halo centers. (took 0.0368672 sec) SUBFIND: SO iteration 15: need to repeat for 3720811 halo centers. (took 0.0368676 sec) SUBFIND: SO iteration 16: need to repeat for 377826 halo centers. (took 0.035498 sec) SUBFIND: SO iteration 17: need to repeat for 11852 halo centers. (took 0.0082243 sec) SUBFIND: SO iteration 1: need to repeat for 3720811 halo centers. (took 0.0379476 sec) SUBFIND: SO iteration 2: need to repeat for 3720811 halo centers. (took 0.0370345 sec) SUBFIND: SO iteration 3: need to repeat for 3720811 halo centers. (took 0.0374803 sec) SUBFIND: SO iteration 4: need to repeat for 3720811 halo centers. (took 0.0389074 sec) SUBFIND: SO iteration 5: need to repeat for 3720811 halo centers. (took 0.0386714 sec) SUBFIND: SO iteration 6: need to repeat for 3720811 halo centers. (took 0.0384953 sec) SUBFIND: SO iteration 7: need to repeat for 3720811 halo centers. (took 0.042351 sec) SUBFIND: SO iteration 8: need to repeat for 3720811 halo centers. (took 0.039581 sec) SUBFIND: SO iteration 9: need to repeat for 3720811 halo centers. (took 0.0377025 sec) SUBFIND: SO iteration 10: need to repeat for 3720811 halo centers. (took 0.0382286 sec) SUBFIND: SO iteration 11: need to repeat for 3720811 halo centers. (took 0.0367857 sec) SUBFIND: SO iteration 12: need to repeat for 3720811 halo centers. (took 0.0373048 sec) SUBFIND: SO iteration 13: need to repeat for 3720811 halo centers. (took 0.036789 sec) SUBFIND: SO iteration 14: need to repeat for 3720811 halo centers. (took 0.0367762 sec) SUBFIND: SO iteration 15: need to repeat for 3720811 halo centers. (took 0.0373074 sec) SUBFIND: SO iteration 16: need to repeat for 586279 halo centers. (took 0.0357175 sec) SUBFIND: SO iteration 17: need to repeat for 17206 halo centers. (took 0.0114022 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00186733 sec) SUBFIND: SO iteration 1: need to repeat for 3720811 halo centers. (took 0.0376873 sec) SUBFIND: SO iteration 2: need to repeat for 3720811 halo centers. (took 0.0360694 sec) SUBFIND: SO iteration 3: need to repeat for 3720811 halo centers. (took 0.0350461 sec) SUBFIND: SO iteration 4: need to repeat for 3720811 halo centers. (took 0.0361761 sec) SUBFIND: SO iteration 5: need to repeat for 3720811 halo centers. (took 0.0366662 sec) SUBFIND: SO iteration 6: need to repeat for 3720811 halo centers. (took 0.0358943 sec) SUBFIND: SO iteration 7: need to repeat for 3720811 halo centers. (took 0.0352069 sec) SUBFIND: SO iteration 8: need to repeat for 3720811 halo centers. (took 0.0364798 sec) SUBFIND: SO iteration 9: need to repeat for 3720811 halo centers. (took 0.035941 sec) SUBFIND: SO iteration 10: need to repeat for 3720811 halo centers. (took 0.0352003 sec) SUBFIND: SO iteration 11: need to repeat for 3720811 halo centers. (took 0.0357106 sec) SUBFIND: SO iteration 12: need to repeat for 3720811 halo centers. (took 0.0424313 sec) SUBFIND: SO iteration 13: need to repeat for 3720811 halo centers. (took 0.0353515 sec) SUBFIND: SO iteration 14: need to repeat for 3720811 halo centers. (took 0.0352431 sec) SUBFIND: SO iteration 15: need to repeat for 3720811 halo centers. (took 0.0352714 sec) SUBFIND: SO iteration 16: need to repeat for 3434227 halo centers. (took 0.0430254 sec) SUBFIND: SO iteration 17: need to repeat for 438112 halo centers. (took 0.0317511 sec) SUBFIND: SO iteration 18: need to repeat for 30260 halo centers. (took 0.00832823 sec) SUBFIND: determining spherical overdensity masses took 2.46818 sec SUBFIND: assembled and ordered groups and subhalos (took 0.132013 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.08959 sec, total size 1391.21 MB, corresponds to effective I/O rate of 665.783 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.09257 sec SUBFIND: Finished with SUBFIND. (total time=224.904 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3720812 SUBFIND: Largest subhalo has 72 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133947477 FOF: preparing output order of particles took 1.41988 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.35408 sec, total size 5262.34 MB, corresponds to effective I/O rate of 715.567 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 59 (rank 59 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 430 (rank 430 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 73 (rank 73 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.