TACC: Starting up job 4242146 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186455.48 Mb (on task= 243), Smallest = 186414.09 Mb (on task= 0), Average = 186436.51 Mb Total Mem: Largest = 191515.35 Mb (on task= 297), Smallest = 191515.33 Mb (on task= 27), Average = 191515.34 Mb Committed_AS: Largest = 5101.25 Mb (on task= 0), Smallest = 5059.85 Mb (on task= 243), Average = 5078.82 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5101.25 Mb (on task= 0), Smallest = 5059.85 Mb (on task= 243), Average = 5078.82 Mb avail /dev/shm: Largest = 95321.54 Mb (on task= 297), Smallest = 95321.47 Mb (on task= 96), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c152-032.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.5077 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 58667927 (tot= 58667927) masstab= 0 READIC: Type 1: 75328893 (tot= 75328893) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 656 (tot= 656) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.26274 sec, total size 6357.72 MB, corresponds to effective I/O rate of 1208.06 MB/sec READIC: Total number of particles : 133997476 INIT: Testing ID uniqueness... INIT: success. took=0.0774354 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: Increasing TopNodeAllocFactor=5.32333 new value=6.92033 DOMAIN: NTopleaves=21505, determination of top-level tree involved 5 iterations and took 0.693289 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=158 for nextra=62, reaching maximum imbalance of 1.09634|1.09682 DOMAIN: combining multiple-domains took 0.0140666 sec DOMAIN: exchange of 75329549 particles DOMAIN: particle exchange done. (took 0.339605 sec) DOMAIN: domain decomposition done. (took in total 1.05764 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0702472 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=168.636 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0932851 sec =106884 NTopnodes=24577 NTopleaves=21505 FOF: Start linking particles (presently allocated=192.014 MB) FOF: linking of small cells took 0.00195219 sec FOF: local links done (took 0.147769 sec, avg-work=0.133205, imbalance=1.10027). FOF: Marked=162987 out of the 75328893 primaries which are linked FOF: begin linking across processors (presently allocated=193.966 MB) FOF: have done 17032 cross links (processed 162987, took 0.00653675 sec) FOF: have done 3232 cross links (processed 77687, took 0.00566035 sec) FOF: have done 505 cross links (processed 10851, took 0.00483134 sec) FOF: have done 84 cross links (processed 1640, took 0.00450433 sec) FOF: have done 18 cross links (processed 235, took 0.00437229 sec) FOF: have done 3 cross links (processed 37, took 0.00441462 sec) FOF: have done 1 cross links (processed 7, took 0.0043189 sec) FOF: have done 0 cross links (processed 3, took 0.00436114 sec) FOF: Local groups found. FOF: primary group finding took = 0.199306 sec FOF: Start finding nearest dm-particle (presently allocated=192.014 MB) FOF: fof-nearest iteration 1: need to repeat for 57811900 particles. (took = 0.0835215 sec) FOF: fof-nearest iteration 2: need to repeat for 53601259 particles. (took = 0.0903131 sec) FOF: fof-nearest iteration 3: need to repeat for 40893425 particles. (took = 0.097508 sec) FOF: fof-nearest iteration 4: need to repeat for 20934351 particles. (took = 0.0884203 sec) FOF: fof-nearest iteration 5: need to repeat for 4403551 particles. (took = 0.0558639 sec) FOF: fof-nearest iteration 6: need to repeat for 120533 particles. (took = 0.0172212 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.441186 sec FOF: compiling local group data and catalogue took = 0.0281817 sec FOF: Total number of FOF groups with at least 32 particles: 2903883 FOF: Largest FOF group has 92 particles. FOF: Total number of particles in FOF groups: 133997476 FOF: group properties are now allocated.. (presently allocated=176.099 MB) FOF: computation of group properties took = 0.0164934 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.125718 sec FOF: Finished computing FoF groups. Complete work took 0.981151 sec (presently allocated=171.096 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=181.226 MB) GRAVTREE: Tree construction done. took 0.406919 sec =137256 NTopnodes=24577 NTopleaves=21505 tree-build-scalability=0.821355 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133522887 particles. (took 0.816489 sec) SUBFIND: ngb iteration 2: need to repeat for 132748032 particles. (took 0.707779 sec) SUBFIND: ngb iteration 3: need to repeat for 131576197 particles. (took 0.657012 sec) SUBFIND: ngb iteration 4: need to repeat for 129710839 particles. (took 0.62579 sec) SUBFIND: ngb iteration 5: need to repeat for 126429424 particles. (took 0.61339 sec) SUBFIND: ngb iteration 6: need to repeat for 120208919 particles. (took 0.60395 sec) SUBFIND: ngb iteration 7: need to repeat for 108618664 particles. (took 0.576775 sec) SUBFIND: ngb iteration 8: need to repeat for 91221112 particles. (took 0.50775 sec) SUBFIND: ngb iteration 9: need to repeat for 74566747 particles. (took 0.399993 sec) SUBFIND: ngb iteration 10: need to repeat for 64750174 particles. (took 0.291103 sec) SUBFIND: ngb iteration 11: need to repeat for 60613166 particles. (took 0.227929 sec) SUBFIND: ngb iteration 12: need to repeat for 59226283 particles. (took 0.203225 sec) SUBFIND: ngb iteration 13: need to repeat for 58825183 particles. (took 0.198978 sec) SUBFIND: ngb iteration 14: need to repeat for 58713932 particles. (took 0.199222 sec) SUBFIND: ngb iteration 15: need to repeat for 58682232 particles. (took 0.195704 sec) SUBFIND: ngb iteration 16: need to repeat for 58672153 particles. (took 0.188432 sec) SUBFIND: ngb iteration 17: need to repeat for 58668684 particles. (took 0.176815 sec) SUBFIND: ngb iteration 18: need to repeat for 58666700 particles. (took 0.163644 sec) SUBFIND: ngb iteration 19: need to repeat for 58664453 particles. (took 0.15211 sec) SUBFIND: ngb iteration 20: need to repeat for 58660525 particles. (took 0.146327 sec) SUBFIND: ngb iteration 21: need to repeat for 58653524 particles. (took 0.145582 sec) SUBFIND: ngb iteration 22: need to repeat for 58639947 particles. (took 0.147901 sec) SUBFIND: ngb iteration 23: need to repeat for 58612590 particles. (took 0.151886 sec) SUBFIND: ngb iteration 24: need to repeat for 58561286 particles. (took 0.157388 sec) SUBFIND: ngb iteration 25: need to repeat for 58459462 particles. (took 0.165022 sec) SUBFIND: ngb iteration 26: need to repeat for 58264806 particles. (took 0.175913 sec) SUBFIND: ngb iteration 27: need to repeat for 57906149 particles. (took 0.191318 sec) SUBFIND: ngb iteration 28: need to repeat for 57282312 particles. (took 0.216254 sec) SUBFIND: ngb iteration 29: need to repeat for 56284708 particles. (took 0.249377 sec) SUBFIND: ngb iteration 30: need to repeat for 54791128 particles. (took 0.29533 sec) SUBFIND: ngb iteration 31: need to repeat for 52682022 particles. (took 0.34289 sec) SUBFIND: ngb iteration 32: need to repeat for 49755188 particles. (took 0.375516 sec) SUBFIND: ngb iteration 33: need to repeat for 45759844 particles. (took 0.387612 sec) SUBFIND: ngb iteration 34: need to repeat for 40532671 particles. (took 0.375477 sec) SUBFIND: ngb iteration 35: need to repeat for 34094105 particles. (took 0.339471 sec) SUBFIND: ngb iteration 36: need to repeat for 26800606 particles. (took 0.291235 sec) SUBFIND: ngb iteration 37: need to repeat for 19314573 particles. (took 0.238515 sec) SUBFIND: ngb iteration 38: need to repeat for 12504143 particles. (took 0.183386 sec) SUBFIND: ngb iteration 39: need to repeat for 7084768 particles. (took 0.128389 sec) SUBFIND: ngb iteration 40: need to repeat for 3413198 particles. (took 0.0844793 sec) SUBFIND: ngb iteration 41: need to repeat for 1359836 particles. (took 0.0492472 sec) SUBFIND: ngb iteration 42: need to repeat for 428754 particles. (took 0.0252204 sec) SUBFIND: ngb iteration 43: need to repeat for 101655 particles. (took 0.0106249 sec) SUBFIND: ngb iteration 44: need to repeat for 17904 particles. (took 0.00388933 sec) SUBFIND: ngb iteration 45: need to repeat for 2144 particles. (took 0.00112348 sec) SUBFIND: ngb iteration 46: need to repeat for 203 particles. (took 0.000401819 sec) SUBFIND: ngb iteration 47: need to repeat for 2 particles. (took 0.000187691 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 12.3936 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997476 particles, for threshold size factor 0.6) SUBFIND: The other 2903883 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00821532 sec SUBFIND: particle balance=1.09634 SUBFIND: subfind_exchange() took 0.449714 sec SUBFIND: particle balance for processing=1.00015 SUBFIND: subdomain decomposition took 0.104118 sec SUBFIND: serial subfind subdomain decomposition took 0.10325 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=6722 took 159.416 sec SUBFIND: root-task=0: Serial processing of halo 0 took 159.669 SUBFIND: Processing overall took (total time=162.199 sec) SUBFIND: 0 out of 569 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 226343 SUBFIND: subfind_exchange() (for return to original CPU) took 0.504197 sec TREE: Full tree construction for all particles. (presently allocated=157.657 MB) GRAVTREE: Tree construction done. took 1.46538 sec =137256 NTopnodes=24577 NTopleaves=21505 tree-build-scalability=0.821355 SUBFIND: SO iteration 1: need to repeat for 2903469 halo centers. (took 0.0401053 sec) SUBFIND: SO iteration 2: need to repeat for 2903469 halo centers. (took 0.0317549 sec) SUBFIND: SO iteration 3: need to repeat for 2903469 halo centers. (took 0.0322999 sec) SUBFIND: SO iteration 4: need to repeat for 2903469 halo centers. (took 0.0324324 sec) SUBFIND: SO iteration 5: need to repeat for 2903469 halo centers. (took 0.0323869 sec) SUBFIND: SO iteration 6: need to repeat for 2903469 halo centers. (took 0.032789 sec) SUBFIND: SO iteration 7: need to repeat for 2903469 halo centers. (took 0.0321206 sec) SUBFIND: SO iteration 8: need to repeat for 2903469 halo centers. (took 0.0339972 sec) SUBFIND: SO iteration 9: need to repeat for 2903469 halo centers. (took 0.0321378 sec) SUBFIND: SO iteration 10: need to repeat for 2903469 halo centers. (took 0.0330861 sec) SUBFIND: SO iteration 11: need to repeat for 2903469 halo centers. (took 0.0316593 sec) SUBFIND: SO iteration 12: need to repeat for 2903469 halo centers. (took 0.0315061 sec) SUBFIND: SO iteration 13: need to repeat for 2903469 halo centers. (took 0.0314889 sec) SUBFIND: SO iteration 14: need to repeat for 2903469 halo centers. (took 0.0318982 sec) SUBFIND: SO iteration 15: need to repeat for 2903469 halo centers. (took 0.0314559 sec) SUBFIND: SO iteration 16: need to repeat for 361625 halo centers. (took 0.0305169 sec) SUBFIND: SO iteration 17: need to repeat for 5445 halo centers. (took 0.00824689 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000800734 sec) SUBFIND: SO iteration 1: need to repeat for 2903469 halo centers. (took 0.0320992 sec) SUBFIND: SO iteration 2: need to repeat for 2903469 halo centers. (took 0.0310857 sec) SUBFIND: SO iteration 3: need to repeat for 2903469 halo centers. (took 0.0316539 sec) SUBFIND: SO iteration 4: need to repeat for 2903469 halo centers. (took 0.0317948 sec) SUBFIND: SO iteration 5: need to repeat for 2903469 halo centers. (took 0.03202 sec) SUBFIND: SO iteration 6: need to repeat for 2903469 halo centers. (took 0.0316745 sec) SUBFIND: SO iteration 7: need to repeat for 2903469 halo centers. (took 0.0318298 sec) SUBFIND: SO iteration 8: need to repeat for 2903469 halo centers. (took 0.0317688 sec) SUBFIND: SO iteration 9: need to repeat for 2903469 halo centers. (took 0.0319828 sec) SUBFIND: SO iteration 10: need to repeat for 2903469 halo centers. (took 0.0317726 sec) SUBFIND: SO iteration 11: need to repeat for 2903469 halo centers. (took 0.0317303 sec) SUBFIND: SO iteration 12: need to repeat for 2903469 halo centers. (took 0.0317779 sec) SUBFIND: SO iteration 13: need to repeat for 2903469 halo centers. (took 0.0315903 sec) SUBFIND: SO iteration 14: need to repeat for 2903469 halo centers. (took 0.0317212 sec) SUBFIND: SO iteration 15: need to repeat for 2903468 halo centers. (took 0.0316573 sec) SUBFIND: SO iteration 16: need to repeat for 221398 halo centers. (took 0.0305301 sec) SUBFIND: SO iteration 17: need to repeat for 2918 halo centers. (took 0.0077224 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00136144 sec) SUBFIND: SO iteration 1: need to repeat for 2903469 halo centers. (took 0.0331452 sec) SUBFIND: SO iteration 2: need to repeat for 2903469 halo centers. (took 0.0310103 sec) SUBFIND: SO iteration 3: need to repeat for 2903469 halo centers. (took 0.0316345 sec) SUBFIND: SO iteration 4: need to repeat for 2903469 halo centers. (took 0.0322373 sec) SUBFIND: SO iteration 5: need to repeat for 2903469 halo centers. (took 0.0314353 sec) SUBFIND: SO iteration 6: need to repeat for 2903469 halo centers. (took 0.0316943 sec) SUBFIND: SO iteration 7: need to repeat for 2903469 halo centers. (took 0.031672 sec) SUBFIND: SO iteration 8: need to repeat for 2903469 halo centers. (took 0.0315571 sec) SUBFIND: SO iteration 9: need to repeat for 2903469 halo centers. (took 0.0314814 sec) SUBFIND: SO iteration 10: need to repeat for 2903469 halo centers. (took 0.0321128 sec) SUBFIND: SO iteration 11: need to repeat for 2903469 halo centers. (took 0.0321289 sec) SUBFIND: SO iteration 12: need to repeat for 2903469 halo centers. (took 0.0318633 sec) SUBFIND: SO iteration 13: need to repeat for 2903469 halo centers. (took 0.03143 sec) SUBFIND: SO iteration 14: need to repeat for 2903469 halo centers. (took 0.0314496 sec) SUBFIND: SO iteration 15: need to repeat for 2903469 halo centers. (took 0.0314526 sec) SUBFIND: SO iteration 16: need to repeat for 370798 halo centers. (took 0.0305219 sec) SUBFIND: SO iteration 17: need to repeat for 5523 halo centers. (took 0.00830813 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000821916 sec) SUBFIND: SO iteration 1: need to repeat for 2903469 halo centers. (took 0.0319925 sec) SUBFIND: SO iteration 2: need to repeat for 2903469 halo centers. (took 0.03106 sec) SUBFIND: SO iteration 3: need to repeat for 2903469 halo centers. (took 0.0296646 sec) SUBFIND: SO iteration 4: need to repeat for 2903469 halo centers. (took 0.0305674 sec) SUBFIND: SO iteration 5: need to repeat for 2903469 halo centers. (took 0.0304551 sec) SUBFIND: SO iteration 6: need to repeat for 2903469 halo centers. (took 0.0304899 sec) SUBFIND: SO iteration 7: need to repeat for 2903469 halo centers. (took 0.0304287 sec) SUBFIND: SO iteration 8: need to repeat for 2903469 halo centers. (took 0.031476 sec) SUBFIND: SO iteration 9: need to repeat for 2903469 halo centers. (took 0.0307329 sec) SUBFIND: SO iteration 10: need to repeat for 2903469 halo centers. (took 0.0307415 sec) SUBFIND: SO iteration 11: need to repeat for 2903469 halo centers. (took 0.0304812 sec) SUBFIND: SO iteration 12: need to repeat for 2903469 halo centers. (took 0.0306585 sec) SUBFIND: SO iteration 13: need to repeat for 2903469 halo centers. (took 0.0305268 sec) SUBFIND: SO iteration 14: need to repeat for 2903469 halo centers. (took 0.0308178 sec) SUBFIND: SO iteration 15: need to repeat for 2903469 halo centers. (took 0.0304992 sec) SUBFIND: SO iteration 16: need to repeat for 2628090 halo centers. (took 0.0305222 sec) SUBFIND: SO iteration 17: need to repeat for 214872 halo centers. (took 0.0271282 sec) SUBFIND: SO iteration 18: need to repeat for 33163 halo centers. (took 0.00655417 sec) SUBFIND: determining spherical overdensity masses took 2.09802 sec SUBFIND: assembled and ordered groups and subhalos (took 0.110274 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.82655 sec, total size 1085.62 MB, corresponds to effective I/O rate of 594.357 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.82872 sec SUBFIND: Finished with SUBFIND. (total time=181.546 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2904036 SUBFIND: Largest subhalo has 92 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133977006 FOF: preparing output order of particles took 1.41462 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.34259 sec, total size 5271.84 MB, corresponds to effective I/O rate of 717.981 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 81 (rank 81 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 73 (rank 73 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 80 (rank 80 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.