TACC: Starting up job 4242146 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186453.91 Mb (on task= 108), Smallest = 186413.05 Mb (on task= 0), Average = 186431.65 Mb Total Mem: Largest = 191515.35 Mb (on task= 297), Smallest = 191515.33 Mb (on task= 27), Average = 191515.34 Mb Committed_AS: Largest = 5102.28 Mb (on task= 0), Smallest = 5061.43 Mb (on task= 108), Average = 5083.68 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5102.28 Mb (on task= 0), Smallest = 5061.43 Mb (on task= 108), Average = 5083.68 Mb avail /dev/shm: Largest = 95321.54 Mb (on task= 297), Smallest = 95321.46 Mb (on task= 413), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c152-032.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 18.7787 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 59224184 (tot= 59224184) masstab= 0 READIC: Type 1: 74772539 (tot= 74772539) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 763 (tot= 763) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.88375 sec, total size 6359.84 MB, corresponds to effective I/O rate of 1302.25 MB/sec READIC: Total number of particles : 133997486 INIT: Testing ID uniqueness... INIT: success. took=0.0796855 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: Increasing TopNodeAllocFactor=5.32333 new value=6.92033 DOMAIN: NTopleaves=22807, determination of top-level tree involved 5 iterations and took 0.682949 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=153 for nextra=78, reaching maximum imbalance of 1.09398|1.09496 DOMAIN: combining multiple-domains took 0.0144872 sec DOMAIN: exchange of 74773302 particles DOMAIN: particle exchange done. (took 0.342468 sec) DOMAIN: domain decomposition done. (took in total 1.05043 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0714747 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=169.075 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0968499 sec =104807 NTopnodes=26065 NTopleaves=22807 FOF: Start linking particles (presently allocated=192.583 MB) FOF: linking of small cells took 0.00193461 sec FOF: local links done (took 0.147652 sec, avg-work=0.133815, imbalance=1.09942). FOF: Marked=157829 out of the 74772539 primaries which are linked FOF: begin linking across processors (presently allocated=194.551 MB) FOF: have done 15840 cross links (processed 157829, took 0.00652897 sec) FOF: have done 3130 cross links (processed 76442, took 0.00581338 sec) FOF: have done 470 cross links (processed 10696, took 0.00484605 sec) FOF: have done 67 cross links (processed 1541, took 0.0045012 sec) FOF: have done 5 cross links (processed 206, took 0.00444896 sec) FOF: have done 1 cross links (processed 19, took 0.00463171 sec) FOF: have done 0 cross links (processed 2, took 0.0044405 sec) FOF: Local groups found. FOF: primary group finding took = 0.195182 sec FOF: Start finding nearest dm-particle (presently allocated=192.583 MB) FOF: fof-nearest iteration 1: need to repeat for 58315750 particles. (took = 0.085161 sec) FOF: fof-nearest iteration 2: need to repeat for 53878927 particles. (took = 0.0912493 sec) FOF: fof-nearest iteration 3: need to repeat for 40634864 particles. (took = 0.0986513 sec) FOF: fof-nearest iteration 4: need to repeat for 20206827 particles. (took = 0.0896205 sec) FOF: fof-nearest iteration 5: need to repeat for 4022071 particles. (took = 0.0558048 sec) FOF: fof-nearest iteration 6: need to repeat for 108446 particles. (took = 0.0165033 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.44552 sec FOF: compiling local group data and catalogue took = 0.0277354 sec FOF: Total number of FOF groups with at least 32 particles: 2600955 FOF: Largest FOF group has 102 particles. FOF: Total number of particles in FOF groups: 133997486 FOF: group properties are now allocated.. (presently allocated=176.352 MB) FOF: computation of group properties took = 0.0150297 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.12129 sec FOF: Finished computing FoF groups. Complete work took 0.974076 sec (presently allocated=171.283 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=181.391 MB) GRAVTREE: Tree construction done. took 0.413955 sec =134991 NTopnodes=26065 NTopleaves=22807 tree-build-scalability=0.80736 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 130254320 particles. (took 0.970575 sec) SUBFIND: ngb iteration 2: need to repeat for 126232996 particles. (took 0.762236 sec) SUBFIND: ngb iteration 3: need to repeat for 122391443 particles. (took 0.657246 sec) SUBFIND: ngb iteration 4: need to repeat for 118681614 particles. (took 0.597129 sec) SUBFIND: ngb iteration 5: need to repeat for 114407244 particles. (took 0.568209 sec) SUBFIND: ngb iteration 6: need to repeat for 107976316 particles. (took 0.54913 sec) SUBFIND: ngb iteration 7: need to repeat for 97209341 particles. (took 0.515568 sec) SUBFIND: ngb iteration 8: need to repeat for 82788210 particles. (took 0.44656 sec) SUBFIND: ngb iteration 9: need to repeat for 70459635 particles. (took 0.349043 sec) SUBFIND: ngb iteration 10: need to repeat for 63546916 particles. (took 0.272953 sec) SUBFIND: ngb iteration 11: need to repeat for 60668401 particles. (took 0.229395 sec) SUBFIND: ngb iteration 12: need to repeat for 59679433 particles. (took 0.215305 sec) SUBFIND: ngb iteration 13: need to repeat for 59371664 particles. (took 0.214034 sec) SUBFIND: ngb iteration 14: need to repeat for 59275404 particles. (took 0.214084 sec) SUBFIND: ngb iteration 15: need to repeat for 59242584 particles. (took 0.210696 sec) SUBFIND: ngb iteration 16: need to repeat for 59229949 particles. (took 0.20223 sec) SUBFIND: ngb iteration 17: need to repeat for 59221736 particles. (took 0.19011 sec) SUBFIND: ngb iteration 18: need to repeat for 59210622 particles. (took 0.175469 sec) SUBFIND: ngb iteration 19: need to repeat for 59191654 particles. (took 0.163628 sec) SUBFIND: ngb iteration 20: need to repeat for 59161320 particles. (took 0.157593 sec) SUBFIND: ngb iteration 21: need to repeat for 59114852 particles. (took 0.15666 sec) SUBFIND: ngb iteration 22: need to repeat for 59043566 particles. (took 0.15858 sec) SUBFIND: ngb iteration 23: need to repeat for 58931431 particles. (took 0.161723 sec) SUBFIND: ngb iteration 24: need to repeat for 58753112 particles. (took 0.166863 sec) SUBFIND: ngb iteration 25: need to repeat for 58462077 particles. (took 0.172742 sec) SUBFIND: ngb iteration 26: need to repeat for 57992499 particles. (took 0.181266 sec) SUBFIND: ngb iteration 27: need to repeat for 57244946 particles. (took 0.194434 sec) SUBFIND: ngb iteration 28: need to repeat for 56080200 particles. (took 0.215502 sec) SUBFIND: ngb iteration 29: need to repeat for 54363395 particles. (took 0.245628 sec) SUBFIND: ngb iteration 30: need to repeat for 52017873 particles. (took 0.282733 sec) SUBFIND: ngb iteration 31: need to repeat for 49051136 particles. (took 0.325363 sec) SUBFIND: ngb iteration 32: need to repeat for 45533072 particles. (took 0.359121 sec) SUBFIND: ngb iteration 33: need to repeat for 41417057 particles. (took 0.370366 sec) SUBFIND: ngb iteration 34: need to repeat for 36534134 particles. (took 0.355293 sec) SUBFIND: ngb iteration 35: need to repeat for 30749211 particles. (took 0.316069 sec) SUBFIND: ngb iteration 36: need to repeat for 24248339 particles. (took 0.275227 sec) SUBFIND: ngb iteration 37: need to repeat for 17552676 particles. (took 0.227982 sec) SUBFIND: ngb iteration 38: need to repeat for 11404057 particles. (took 0.178363 sec) SUBFIND: ngb iteration 39: need to repeat for 6479639 particles. (took 0.128296 sec) SUBFIND: ngb iteration 40: need to repeat for 3126393 particles. (took 0.083668 sec) SUBFIND: ngb iteration 41: need to repeat for 1239186 particles. (took 0.0472204 sec) SUBFIND: ngb iteration 42: need to repeat for 393621 particles. (took 0.0225177 sec) SUBFIND: ngb iteration 43: need to repeat for 95278 particles. (took 0.00945563 sec) SUBFIND: ngb iteration 44: need to repeat for 16575 particles. (took 0.00348357 sec) SUBFIND: ngb iteration 45: need to repeat for 1929 particles. (took 0.00103811 sec) SUBFIND: ngb iteration 46: need to repeat for 170 particles. (took 0.000363711 sec) SUBFIND: ngb iteration 47: need to repeat for 9 particles. (took 0.000216978 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 12.3094 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997486 particles, for threshold size factor 0.6) SUBFIND: The other 2600955 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00730748 sec SUBFIND: particle balance=1.09398 SUBFIND: subfind_exchange() took 0.453907 sec SUBFIND: particle balance for processing=1.00021 SUBFIND: subdomain decomposition took 0.104792 sec SUBFIND: serial subfind subdomain decomposition took 0.103534 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=6021 took 142.175 sec SUBFIND: root-task=0: Serial processing of halo 0 took 142.429 SUBFIND: Processing overall took (total time=145.279 sec) SUBFIND: 0 out of 1580 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 228490 SUBFIND: subfind_exchange() (for return to original CPU) took 0.509173 sec TREE: Full tree construction for all particles. (presently allocated=158.344 MB) GRAVTREE: Tree construction done. took 1.49034 sec =134991 NTopnodes=26065 NTopleaves=22807 tree-build-scalability=0.80736 SUBFIND: SO iteration 1: need to repeat for 2600713 halo centers. (took 0.0357324 sec) SUBFIND: SO iteration 2: need to repeat for 2600713 halo centers. (took 0.0294074 sec) SUBFIND: SO iteration 3: need to repeat for 2600713 halo centers. (took 0.0300742 sec) SUBFIND: SO iteration 4: need to repeat for 2600713 halo centers. (took 0.0296101 sec) SUBFIND: SO iteration 5: need to repeat for 2600713 halo centers. (took 0.0296152 sec) SUBFIND: SO iteration 6: need to repeat for 2600713 halo centers. (took 0.0297675 sec) SUBFIND: SO iteration 7: need to repeat for 2600713 halo centers. (took 0.0295812 sec) SUBFIND: SO iteration 8: need to repeat for 2600713 halo centers. (took 0.029521 sec) SUBFIND: SO iteration 9: need to repeat for 2600713 halo centers. (took 0.0300686 sec) SUBFIND: SO iteration 10: need to repeat for 2600713 halo centers. (took 0.0295279 sec) SUBFIND: SO iteration 11: need to repeat for 2600713 halo centers. (took 0.0297116 sec) SUBFIND: SO iteration 12: need to repeat for 2600713 halo centers. (took 0.0298592 sec) SUBFIND: SO iteration 13: need to repeat for 2600713 halo centers. (took 0.0300888 sec) SUBFIND: SO iteration 14: need to repeat for 2600713 halo centers. (took 0.0302632 sec) SUBFIND: SO iteration 15: need to repeat for 2600713 halo centers. (took 0.0298172 sec) SUBFIND: SO iteration 16: need to repeat for 286918 halo centers. (took 0.0294468 sec) SUBFIND: SO iteration 17: need to repeat for 3206 halo centers. (took 0.00812322 sec) SUBFIND: SO iteration 1: need to repeat for 2600713 halo centers. (took 0.0305546 sec) SUBFIND: SO iteration 2: need to repeat for 2600713 halo centers. (took 0.0294871 sec) SUBFIND: SO iteration 3: need to repeat for 2600713 halo centers. (took 0.0298375 sec) SUBFIND: SO iteration 4: need to repeat for 2600713 halo centers. (took 0.0297482 sec) SUBFIND: SO iteration 5: need to repeat for 2600713 halo centers. (took 0.0296925 sec) SUBFIND: SO iteration 6: need to repeat for 2600713 halo centers. (took 0.0295234 sec) SUBFIND: SO iteration 7: need to repeat for 2600713 halo centers. (took 0.0301069 sec) SUBFIND: SO iteration 8: need to repeat for 2600713 halo centers. (took 0.0300288 sec) SUBFIND: SO iteration 9: need to repeat for 2600713 halo centers. (took 0.0296107 sec) SUBFIND: SO iteration 10: need to repeat for 2600713 halo centers. (took 0.0296675 sec) SUBFIND: SO iteration 11: need to repeat for 2600713 halo centers. (took 0.0296035 sec) SUBFIND: SO iteration 12: need to repeat for 2600713 halo centers. (took 0.0296093 sec) SUBFIND: SO iteration 13: need to repeat for 2600713 halo centers. (took 0.0295817 sec) SUBFIND: SO iteration 14: need to repeat for 2600713 halo centers. (took 0.0296433 sec) SUBFIND: SO iteration 15: need to repeat for 2600713 halo centers. (took 0.0296181 sec) SUBFIND: SO iteration 16: need to repeat for 176501 halo centers. (took 0.0287189 sec) SUBFIND: SO iteration 17: need to repeat for 1908 halo centers. (took 0.00641492 sec) SUBFIND: SO iteration 1: need to repeat for 2600713 halo centers. (took 0.0300097 sec) SUBFIND: SO iteration 2: need to repeat for 2600713 halo centers. (took 0.0290457 sec) SUBFIND: SO iteration 3: need to repeat for 2600713 halo centers. (took 0.0318511 sec) SUBFIND: SO iteration 4: need to repeat for 2600713 halo centers. (took 0.0312228 sec) SUBFIND: SO iteration 5: need to repeat for 2600713 halo centers. (took 0.0311828 sec) SUBFIND: SO iteration 6: need to repeat for 2600713 halo centers. (took 0.0295204 sec) SUBFIND: SO iteration 7: need to repeat for 2600713 halo centers. (took 0.0294804 sec) SUBFIND: SO iteration 8: need to repeat for 2600713 halo centers. (took 0.0294915 sec) SUBFIND: SO iteration 9: need to repeat for 2600713 halo centers. (took 0.0294911 sec) SUBFIND: SO iteration 10: need to repeat for 2600713 halo centers. (took 0.0294886 sec) SUBFIND: SO iteration 11: need to repeat for 2600713 halo centers. (took 0.0296092 sec) SUBFIND: SO iteration 12: need to repeat for 2600713 halo centers. (took 0.029441 sec) SUBFIND: SO iteration 13: need to repeat for 2600713 halo centers. (took 0.029725 sec) SUBFIND: SO iteration 14: need to repeat for 2600713 halo centers. (took 0.0297438 sec) SUBFIND: SO iteration 15: need to repeat for 2600713 halo centers. (took 0.0296815 sec) SUBFIND: SO iteration 16: need to repeat for 294980 halo centers. (took 0.0289392 sec) SUBFIND: SO iteration 17: need to repeat for 3307 halo centers. (took 0.0077765 sec) SUBFIND: SO iteration 1: need to repeat for 2600713 halo centers. (took 0.0303022 sec) SUBFIND: SO iteration 2: need to repeat for 2600713 halo centers. (took 0.0291645 sec) SUBFIND: SO iteration 3: need to repeat for 2600713 halo centers. (took 0.0279665 sec) SUBFIND: SO iteration 4: need to repeat for 2600713 halo centers. (took 0.0286719 sec) SUBFIND: SO iteration 5: need to repeat for 2600713 halo centers. (took 0.0286203 sec) SUBFIND: SO iteration 6: need to repeat for 2600713 halo centers. (took 0.0286545 sec) SUBFIND: SO iteration 7: need to repeat for 2600713 halo centers. (took 0.0286214 sec) SUBFIND: SO iteration 8: need to repeat for 2600713 halo centers. (took 0.0286263 sec) SUBFIND: SO iteration 9: need to repeat for 2600713 halo centers. (took 0.0287482 sec) SUBFIND: SO iteration 10: need to repeat for 2600713 halo centers. (took 0.0286489 sec) SUBFIND: SO iteration 11: need to repeat for 2600713 halo centers. (took 0.0286491 sec) SUBFIND: SO iteration 12: need to repeat for 2600713 halo centers. (took 0.0286222 sec) SUBFIND: SO iteration 13: need to repeat for 2600713 halo centers. (took 0.0286502 sec) SUBFIND: SO iteration 14: need to repeat for 2600713 halo centers. (took 0.0286162 sec) SUBFIND: SO iteration 15: need to repeat for 2600713 halo centers. (took 0.0286409 sec) SUBFIND: SO iteration 16: need to repeat for 2326134 halo centers. (took 0.0285185 sec) SUBFIND: SO iteration 17: need to repeat for 243445 halo centers. (took 0.0262587 sec) SUBFIND: SO iteration 18: need to repeat for 32197 halo centers. (took 0.00754826 sec) SUBFIND: determining spherical overdensity masses took 1.96211 sec SUBFIND: assembled and ordered groups and subhalos (took 0.107181 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.74759 sec, total size 972.615 MB, corresponds to effective I/O rate of 556.548 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.74945 sec SUBFIND: Finished with SUBFIND. (total time=164.361 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2602283 SUBFIND: Largest subhalo has 102 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133984070 FOF: preparing output order of particles took 1.40237 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.26207 sec, total size 5278.21 MB, corresponds to effective I/O rate of 726.818 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 246 (rank 246 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 230 (rank 230 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 231 (rank 231 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 244 (rank 244 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 251 (rank 251 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.