TACC: Starting up job 4243127 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186352.23 Mb (on task= 756), Smallest = 186194.43 Mb (on task= 0), Average = 186288.41 Mb Total Mem: Largest = 191386.89 Mb (on task= 837), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5192.45 Mb (on task= 0), Smallest = 5034.66 Mb (on task= 756), Average = 5098.48 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5192.45 Mb (on task= 0), Smallest = 5034.66 Mb (on task= 756), Average = 5098.48 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 513), Smallest = 95257.16 Mb (on task= 749), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c203-010.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 19.0057 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 61227194 (tot= 61227194) masstab= 0 READIC: Type 1: 72768406 (tot= 72768406) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 1886 (tot= 1886) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.18327 sec, total size 6367.48 MB, corresponds to effective I/O rate of 1522.13 MB/sec READIC: Total number of particles : 133997486 INIT: Testing ID uniqueness... INIT: success. took=0.0616462 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32831, determination of top-level tree involved 6 iterations and took 0.378026 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=175 for nextra=125, reaching maximum imbalance of 1.11189|1.11203 DOMAIN: combining multiple-domains took 0.0153102 sec DOMAIN: exchange of 72770292 particles DOMAIN: particle exchange done. (took 0.219973 sec) DOMAIN: domain decomposition done. (took in total 0.619113 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0333282 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=85.6523 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0519414 sec =71870.7 NTopnodes=37521 NTopleaves=32831 FOF: Start linking particles (presently allocated=97.4883 MB) FOF: linking of small cells took 0.000782399 sec FOF: local links done (took 0.0772849 sec, avg-work=0.0677619, imbalance=1.12772). FOF: Marked=186295 out of the 72768406 primaries which are linked FOF: begin linking across processors (presently allocated=98.5219 MB) FOF: have done 16807 cross links (processed 186295, took 0.00374394 sec) FOF: have done 3334 cross links (processed 90030, took 0.00308424 sec) FOF: have done 533 cross links (processed 12444, took 0.00260746 sec) FOF: have done 86 cross links (processed 1891, took 0.0024395 sec) FOF: have done 15 cross links (processed 304, took 0.00235168 sec) FOF: have done 2 cross links (processed 51, took 0.00234392 sec) FOF: have done 0 cross links (processed 4, took 0.00231188 sec) FOF: Local groups found. FOF: primary group finding took = 0.10152 sec FOF: Start finding nearest dm-particle (presently allocated=97.4883 MB) FOF: fof-nearest iteration 1: need to repeat for 60093000 particles. (took = 0.0454719 sec) FOF: fof-nearest iteration 2: need to repeat for 54623691 particles. (took = 0.0493456 sec) FOF: fof-nearest iteration 3: need to repeat for 39153162 particles. (took = 0.0540932 sec) FOF: fof-nearest iteration 4: need to repeat for 17422092 particles. (took = 0.0475077 sec) FOF: fof-nearest iteration 5: need to repeat for 2980515 particles. (took = 0.0268161 sec) FOF: fof-nearest iteration 6: need to repeat for 79804 particles. (took = 0.00736523 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.234834 sec FOF: compiling local group data and catalogue took = 0.0130749 sec FOF: Total number of FOF groups with at least 32 particles: 1896354 FOF: Largest FOF group has 140 particles. FOF: Total number of particles in FOF groups: 133997486 FOF: group properties are now allocated.. (presently allocated=88.9075 MB) FOF: computation of group properties took = 0.00599308 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.231175 sec FOF: Finished computing FoF groups. Complete work took 0.755852 sec (presently allocated=86.4472 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.596 MB) GRAVTREE: Tree construction done. took 0.153356 sec =86877.7 NTopnodes=37521 NTopleaves=32831 tree-build-scalability=0.568617 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133483238 particles. (took 0.421988 sec) SUBFIND: ngb iteration 2: need to repeat for 132812170 particles. (took 0.349436 sec) SUBFIND: ngb iteration 3: need to repeat for 131956568 particles. (took 0.319047 sec) SUBFIND: ngb iteration 4: need to repeat for 130768155 particles. (took 0.301005 sec) SUBFIND: ngb iteration 5: need to repeat for 128840898 particles. (took 0.291167 sec) SUBFIND: ngb iteration 6: need to repeat for 125312420 particles. (took 0.292031 sec) SUBFIND: ngb iteration 7: need to repeat for 118618670 particles. (took 0.29172 sec) SUBFIND: ngb iteration 8: need to repeat for 107117899 particles. (took 0.281557 sec) SUBFIND: ngb iteration 9: need to repeat for 92081247 particles. (took 0.252848 sec) SUBFIND: ngb iteration 10: need to repeat for 78807804 particles. (took 0.213203 sec) SUBFIND: ngb iteration 11: need to repeat for 70345411 particles. (took 0.176328 sec) SUBFIND: ngb iteration 12: need to repeat for 65826787 particles. (took 0.155195 sec) SUBFIND: ngb iteration 13: need to repeat for 63579256 particles. (took 0.147378 sec) SUBFIND: ngb iteration 14: need to repeat for 62459516 particles. (took 0.142054 sec) SUBFIND: ngb iteration 15: need to repeat for 61868644 particles. (took 0.136992 sec) SUBFIND: ngb iteration 16: need to repeat for 61526866 particles. (took 0.129589 sec) SUBFIND: ngb iteration 17: need to repeat for 61306558 particles. (took 0.120822 sec) SUBFIND: ngb iteration 18: need to repeat for 61150684 particles. (took 0.111012 sec) SUBFIND: ngb iteration 19: need to repeat for 61024584 particles. (took 0.102493 sec) SUBFIND: ngb iteration 20: need to repeat for 60901741 particles. (took 0.0976396 sec) SUBFIND: ngb iteration 21: need to repeat for 60759562 particles. (took 0.0960527 sec) SUBFIND: ngb iteration 22: need to repeat for 60575571 particles. (took 0.096601 sec) SUBFIND: ngb iteration 23: need to repeat for 60327968 particles. (took 0.0978617 sec) SUBFIND: ngb iteration 24: need to repeat for 59989795 particles. (took 0.0997889 sec) SUBFIND: ngb iteration 25: need to repeat for 59522485 particles. (took 0.102504 sec) SUBFIND: ngb iteration 26: need to repeat for 58878630 particles. (took 0.10615 sec) SUBFIND: ngb iteration 27: need to repeat for 57994830 particles. (took 0.111621 sec) SUBFIND: ngb iteration 28: need to repeat for 56791936 particles. (took 0.119471 sec) SUBFIND: ngb iteration 29: need to repeat for 55197612 particles. (took 0.12959 sec) SUBFIND: ngb iteration 30: need to repeat for 53128399 particles. (took 0.142573 sec) SUBFIND: ngb iteration 31: need to repeat for 50518177 particles. (took 0.154209 sec) SUBFIND: ngb iteration 32: need to repeat for 47274523 particles. (took 0.160849 sec) SUBFIND: ngb iteration 33: need to repeat for 43344059 particles. (took 0.16724 sec) SUBFIND: ngb iteration 34: need to repeat for 38659767 particles. (took 0.166872 sec) SUBFIND: ngb iteration 35: need to repeat for 33228753 particles. (took 0.15438 sec) SUBFIND: ngb iteration 36: need to repeat for 27241099 particles. (took 0.13671 sec) SUBFIND: ngb iteration 37: need to repeat for 21037364 particles. (took 0.117617 sec) SUBFIND: ngb iteration 38: need to repeat for 15064263 particles. (took 0.0984993 sec) SUBFIND: ngb iteration 39: need to repeat for 9816612 particles. (took 0.0775257 sec) SUBFIND: ngb iteration 40: need to repeat for 5702242 particles. (took 0.0565397 sec) SUBFIND: ngb iteration 41: need to repeat for 2880142 particles. (took 0.0373451 sec) SUBFIND: ngb iteration 42: need to repeat for 1221914 particles. (took 0.0220746 sec) SUBFIND: ngb iteration 43: need to repeat for 424488 particles. (took 0.0118465 sec) SUBFIND: ngb iteration 44: need to repeat for 115401 particles. (took 0.00538773 sec) SUBFIND: ngb iteration 45: need to repeat for 23238 particles. (took 0.00247459 sec) SUBFIND: ngb iteration 46: need to repeat for 3193 particles. (took 0.000932833 sec) SUBFIND: ngb iteration 47: need to repeat for 273 particles. (took 0.000408096 sec) SUBFIND: ngb iteration 48: need to repeat for 13 particles. (took 0.000278862 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.81098 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997486 particles, for threshold size factor 0.6) SUBFIND: The other 1896354 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0042872 sec SUBFIND: particle balance=1.11176 SUBFIND: subfind_exchange() took 0.232228 sec SUBFIND: particle balance for processing=1.00051 SUBFIND: subdomain decomposition took 0.0513777 sec SUBFIND: serial subfind subdomain decomposition took 0.0509137 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2195 took 22.1333 sec SUBFIND: root-task=0: Serial processing of halo 0 took 22.2574 SUBFIND: Processing overall took (total time=22.946 sec) SUBFIND: 0 out of 5463 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258485 ALLOCATE: Changing to MaxPartSph = 118108 SUBFIND: subfind_exchange() (for return to original CPU) took 0.260149 sec TREE: Full tree construction for all particles. (presently allocated=79.598 MB) GRAVTREE: Tree construction done. took 0.7619 sec =86877.7 NTopnodes=37521 NTopleaves=32831 tree-build-scalability=0.568617 SUBFIND: SO iteration 1: need to repeat for 1896292 halo centers. (took 0.0202694 sec) SUBFIND: SO iteration 2: need to repeat for 1896292 halo centers. (took 0.0182817 sec) SUBFIND: SO iteration 3: need to repeat for 1896292 halo centers. (took 0.0184117 sec) SUBFIND: SO iteration 4: need to repeat for 1896292 halo centers. (took 0.0182759 sec) SUBFIND: SO iteration 5: need to repeat for 1896292 halo centers. (took 0.0183101 sec) SUBFIND: SO iteration 6: need to repeat for 1896292 halo centers. (took 0.0182867 sec) SUBFIND: SO iteration 7: need to repeat for 1896292 halo centers. (took 0.0182424 sec) SUBFIND: SO iteration 8: need to repeat for 1896292 halo centers. (took 0.0182684 sec) SUBFIND: SO iteration 9: need to repeat for 1896292 halo centers. (took 0.018225 sec) SUBFIND: SO iteration 10: need to repeat for 1896292 halo centers. (took 0.0182892 sec) SUBFIND: SO iteration 11: need to repeat for 1896292 halo centers. (took 0.0183639 sec) SUBFIND: SO iteration 12: need to repeat for 1896292 halo centers. (took 0.0182858 sec) SUBFIND: SO iteration 13: need to repeat for 1896292 halo centers. (took 0.0182538 sec) SUBFIND: SO iteration 14: need to repeat for 1896292 halo centers. (took 0.0182482 sec) SUBFIND: SO iteration 15: need to repeat for 1896292 halo centers. (took 0.0183141 sec) SUBFIND: SO iteration 16: need to repeat for 143067 halo centers. (took 0.0179177 sec) SUBFIND: SO iteration 17: need to repeat for 1386 halo centers. (took 0.00569344 sec) SUBFIND: SO iteration 18: need to repeat for 4 halo centers. (took 0.000303067 sec) SUBFIND: SO iteration 1: need to repeat for 1896292 halo centers. (took 0.0183993 sec) SUBFIND: SO iteration 2: need to repeat for 1896292 halo centers. (took 0.0180151 sec) SUBFIND: SO iteration 3: need to repeat for 1896292 halo centers. (took 0.0183845 sec) SUBFIND: SO iteration 4: need to repeat for 1896292 halo centers. (took 0.0182758 sec) SUBFIND: SO iteration 5: need to repeat for 1896292 halo centers. (took 0.0182844 sec) SUBFIND: SO iteration 6: need to repeat for 1896292 halo centers. (took 0.0183143 sec) SUBFIND: SO iteration 7: need to repeat for 1896292 halo centers. (took 0.0182809 sec) SUBFIND: SO iteration 8: need to repeat for 1896292 halo centers. (took 0.0183589 sec) SUBFIND: SO iteration 9: need to repeat for 1896292 halo centers. (took 0.0182583 sec) SUBFIND: SO iteration 10: need to repeat for 1896292 halo centers. (took 0.018282 sec) SUBFIND: SO iteration 11: need to repeat for 1896292 halo centers. (took 0.0183936 sec) SUBFIND: SO iteration 12: need to repeat for 1896292 halo centers. (took 0.0182661 sec) SUBFIND: SO iteration 13: need to repeat for 1896292 halo centers. (took 0.0182573 sec) SUBFIND: SO iteration 14: need to repeat for 1896292 halo centers. (took 0.0182825 sec) SUBFIND: SO iteration 15: need to repeat for 1896292 halo centers. (took 0.018287 sec) SUBFIND: SO iteration 16: need to repeat for 84280 halo centers. (took 0.0179394 sec) SUBFIND: SO iteration 17: need to repeat for 395 halo centers. (took 0.00406308 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000278227 sec) SUBFIND: SO iteration 1: need to repeat for 1896292 halo centers. (took 0.0183241 sec) SUBFIND: SO iteration 2: need to repeat for 1896292 halo centers. (took 0.0181047 sec) SUBFIND: SO iteration 3: need to repeat for 1896292 halo centers. (took 0.0185011 sec) SUBFIND: SO iteration 4: need to repeat for 1896292 halo centers. (took 0.0184274 sec) SUBFIND: SO iteration 5: need to repeat for 1896292 halo centers. (took 0.0184469 sec) SUBFIND: SO iteration 6: need to repeat for 1896292 halo centers. (took 0.0185923 sec) SUBFIND: SO iteration 7: need to repeat for 1896292 halo centers. (took 0.0188245 sec) SUBFIND: SO iteration 8: need to repeat for 1896292 halo centers. (took 0.0184506 sec) SUBFIND: SO iteration 9: need to repeat for 1896292 halo centers. (took 0.0184836 sec) SUBFIND: SO iteration 10: need to repeat for 1896292 halo centers. (took 0.0190909 sec) SUBFIND: SO iteration 11: need to repeat for 1896292 halo centers. (took 0.0185722 sec) SUBFIND: SO iteration 12: need to repeat for 1896292 halo centers. (took 0.0185205 sec) SUBFIND: SO iteration 13: need to repeat for 1896292 halo centers. (took 0.0183557 sec) SUBFIND: SO iteration 14: need to repeat for 1896292 halo centers. (took 0.0182166 sec) SUBFIND: SO iteration 15: need to repeat for 1896292 halo centers. (took 0.0182652 sec) SUBFIND: SO iteration 16: need to repeat for 147217 halo centers. (took 0.0180044 sec) SUBFIND: SO iteration 17: need to repeat for 1521 halo centers. (took 0.00571151 sec) SUBFIND: SO iteration 18: need to repeat for 4 halo centers. (took 0.000325739 sec) SUBFIND: SO iteration 1: need to repeat for 1896292 halo centers. (took 0.0182658 sec) SUBFIND: SO iteration 2: need to repeat for 1896292 halo centers. (took 0.018167 sec) SUBFIND: SO iteration 3: need to repeat for 1896292 halo centers. (took 0.0177219 sec) SUBFIND: SO iteration 4: need to repeat for 1896292 halo centers. (took 0.0179764 sec) SUBFIND: SO iteration 5: need to repeat for 1896292 halo centers. (took 0.0180123 sec) SUBFIND: SO iteration 6: need to repeat for 1896292 halo centers. (took 0.0180047 sec) SUBFIND: SO iteration 7: need to repeat for 1896292 halo centers. (took 0.0179611 sec) SUBFIND: SO iteration 8: need to repeat for 1896292 halo centers. (took 0.0179645 sec) SUBFIND: SO iteration 9: need to repeat for 1896292 halo centers. (took 0.017907 sec) SUBFIND: SO iteration 10: need to repeat for 1896292 halo centers. (took 0.0179677 sec) SUBFIND: SO iteration 11: need to repeat for 1896292 halo centers. (took 0.017961 sec) SUBFIND: SO iteration 12: need to repeat for 1896292 halo centers. (took 0.0179676 sec) SUBFIND: SO iteration 13: need to repeat for 1896292 halo centers. (took 0.0179593 sec) SUBFIND: SO iteration 14: need to repeat for 1896292 halo centers. (took 0.017953 sec) SUBFIND: SO iteration 15: need to repeat for 1896292 halo centers. (took 0.0179762 sec) SUBFIND: SO iteration 16: need to repeat for 1585580 halo centers. (took 0.0179001 sec) SUBFIND: SO iteration 17: need to repeat for 132347 halo centers. (took 0.0160872 sec) SUBFIND: SO iteration 18: need to repeat for 18363 halo centers. (took 0.00522589 sec) SUBFIND: SO iteration 19: need to repeat for 2 halo centers. (took 0.0011706 sec) SUBFIND: determining spherical overdensity masses took 1.21241 sec SUBFIND: assembled and ordered groups and subhalos (took 0.292295 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.24193 sec, total size 710.039 MB, corresponds to effective I/O rate of 167.386 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.24312 sec SUBFIND: Finished with SUBFIND. (total time=36.9579 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1901720 SUBFIND: Largest subhalo has 140 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133992387 FOF: preparing output order of particles took 1.00999 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.60345 sec, total size 5301.13 MB, corresponds to effective I/O rate of 616.163 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 495 (rank 495 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 476 (rank 476 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.