TACC: Starting up job 4243127 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186346.78 Mb (on task= 756), Smallest = 186199.21 Mb (on task= 0), Average = 186288.36 Mb Total Mem: Largest = 191386.89 Mb (on task= 837), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5187.68 Mb (on task= 0), Smallest = 5040.11 Mb (on task= 756), Average = 5098.53 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5187.68 Mb (on task= 0), Smallest = 5040.11 Mb (on task= 756), Average = 5098.53 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 513), Smallest = 95257.16 Mb (on task= 755), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c203-010.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.7089 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 61326563 (tot= 61326563) masstab= 0 READIC: Type 1: 72668941 (tot= 72668941) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 2008 (tot= 2008) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.22927 sec, total size 6367.86 MB, corresponds to effective I/O rate of 1505.66 MB/sec READIC: Total number of particles : 133997512 INIT: Testing ID uniqueness... INIT: success. took=0.0706827 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32726, determination of top-level tree involved 6 iterations and took 0.379212 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=175 for nextra=125, reaching maximum imbalance of 1.11192|1.11203 DOMAIN: combining multiple-domains took 0.0153468 sec DOMAIN: exchange of 72670949 particles DOMAIN: particle exchange done. (took 0.224748 sec) DOMAIN: domain decomposition done. (took in total 0.625022 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0334079 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=85.688 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0523838 sec =71524.3 NTopnodes=37401 NTopleaves=32726 FOF: Start linking particles (presently allocated=97.5447 MB) FOF: linking of small cells took 0.000888338 sec FOF: local links done (took 0.0774868 sec, avg-work=0.0677999, imbalance=1.12684). FOF: Marked=185688 out of the 72668941 primaries which are linked FOF: begin linking across processors (presently allocated=98.5826 MB) FOF: have done 16667 cross links (processed 185688, took 0.00377985 sec) FOF: have done 3354 cross links (processed 90004, took 0.00309043 sec) FOF: have done 528 cross links (processed 12425, took 0.00255454 sec) FOF: have done 80 cross links (processed 1945, took 0.00239582 sec) FOF: have done 9 cross links (processed 282, took 0.00239049 sec) FOF: have done 1 cross links (processed 30, took 0.00235573 sec) FOF: have done 0 cross links (processed 5, took 0.00231465 sec) FOF: Local groups found. FOF: primary group finding took = 0.101815 sec FOF: Start finding nearest dm-particle (presently allocated=97.5447 MB) FOF: fof-nearest iteration 1: need to repeat for 60175133 particles. (took = 0.0454041 sec) FOF: fof-nearest iteration 2: need to repeat for 54631196 particles. (took = 0.0494825 sec) FOF: fof-nearest iteration 3: need to repeat for 39029204 particles. (took = 0.0538716 sec) FOF: fof-nearest iteration 4: need to repeat for 17268562 particles. (took = 0.0469107 sec) FOF: fof-nearest iteration 5: need to repeat for 2939422 particles. (took = 0.026777 sec) FOF: fof-nearest iteration 6: need to repeat for 78578 particles. (took = 0.00741295 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.234117 sec FOF: compiling local group data and catalogue took = 0.0129282 sec FOF: Total number of FOF groups with at least 32 particles: 1866784 FOF: Largest FOF group has 72 particles. FOF: Total number of particles in FOF groups: 133997512 FOF: group properties are now allocated.. (presently allocated=88.9459 MB) FOF: computation of group properties took = 0.00603315 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.229044 sec FOF: Finished computing FoF groups. Complete work took 0.755299 sec (presently allocated=86.4752 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.6237 MB) GRAVTREE: Tree construction done. took 0.155471 sec =86522.1 NTopnodes=37401 NTopleaves=32726 tree-build-scalability=0.568229 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133591745 particles. (took 0.411191 sec) SUBFIND: ngb iteration 2: need to repeat for 133043293 particles. (took 0.349403 sec) SUBFIND: ngb iteration 3: need to repeat for 132316849 particles. (took 0.321122 sec) SUBFIND: ngb iteration 4: need to repeat for 131245230 particles. (took 0.301888 sec) SUBFIND: ngb iteration 5: need to repeat for 129432275 particles. (took 0.295507 sec) SUBFIND: ngb iteration 6: need to repeat for 126035338 particles. (took 0.297062 sec) SUBFIND: ngb iteration 7: need to repeat for 119535877 particles. (took 0.297843 sec) SUBFIND: ngb iteration 8: need to repeat for 108249679 particles. (took 0.285289 sec) SUBFIND: ngb iteration 9: need to repeat for 93147027 particles. (took 0.256521 sec) SUBFIND: ngb iteration 10: need to repeat for 79540646 particles. (took 0.216919 sec) SUBFIND: ngb iteration 11: need to repeat for 70784390 particles. (took 0.179674 sec) SUBFIND: ngb iteration 12: need to repeat for 66095473 particles. (took 0.15693 sec) SUBFIND: ngb iteration 13: need to repeat for 63758216 particles. (took 0.147438 sec) SUBFIND: ngb iteration 14: need to repeat for 62595771 particles. (took 0.142933 sec) SUBFIND: ngb iteration 15: need to repeat for 61983336 particles. (took 0.138349 sec) SUBFIND: ngb iteration 16: need to repeat for 61633878 particles. (took 0.130841 sec) SUBFIND: ngb iteration 17: need to repeat for 61412858 particles. (took 0.121408 sec) SUBFIND: ngb iteration 18: need to repeat for 61256322 particles. (took 0.11154 sec) SUBFIND: ngb iteration 19: need to repeat for 61130978 particles. (took 0.103422 sec) SUBFIND: ngb iteration 20: need to repeat for 61011519 particles. (took 0.0983073 sec) SUBFIND: ngb iteration 21: need to repeat for 60875988 particles. (took 0.0966306 sec) SUBFIND: ngb iteration 22: need to repeat for 60703225 particles. (took 0.0971632 sec) SUBFIND: ngb iteration 23: need to repeat for 60470433 particles. (took 0.0986838 sec) SUBFIND: ngb iteration 24: need to repeat for 60151001 particles. (took 0.100767 sec) SUBFIND: ngb iteration 25: need to repeat for 59704731 particles. (took 0.103179 sec) SUBFIND: ngb iteration 26: need to repeat for 59092859 particles. (took 0.106758 sec) SUBFIND: ngb iteration 27: need to repeat for 58255257 particles. (took 0.113403 sec) SUBFIND: ngb iteration 28: need to repeat for 57112683 particles. (took 0.122061 sec) SUBFIND: ngb iteration 29: need to repeat for 55589115 particles. (took 0.132982 sec) SUBFIND: ngb iteration 30: need to repeat for 53608495 particles. (took 0.145614 sec) SUBFIND: ngb iteration 31: need to repeat for 51086349 particles. (took 0.15845 sec) SUBFIND: ngb iteration 32: need to repeat for 47932413 particles. (took 0.168385 sec) SUBFIND: ngb iteration 33: need to repeat for 44068572 particles. (took 0.171573 sec) SUBFIND: ngb iteration 34: need to repeat for 39420563 particles. (took 0.171974 sec) SUBFIND: ngb iteration 35: need to repeat for 34019989 particles. (took 0.157913 sec) SUBFIND: ngb iteration 36: need to repeat for 28030438 particles. (took 0.140976 sec) SUBFIND: ngb iteration 37: need to repeat for 21768283 particles. (took 0.119974 sec) SUBFIND: ngb iteration 38: need to repeat for 15703187 particles. (took 0.0996602 sec) SUBFIND: ngb iteration 39: need to repeat for 10324972 particles. (took 0.0789353 sec) SUBFIND: ngb iteration 40: need to repeat for 6055558 particles. (took 0.0591996 sec) SUBFIND: ngb iteration 41: need to repeat for 3093806 particles. (took 0.0406727 sec) SUBFIND: ngb iteration 42: need to repeat for 1329657 particles. (took 0.024851 sec) SUBFIND: ngb iteration 43: need to repeat for 465785 particles. (took 0.0134997 sec) SUBFIND: ngb iteration 44: need to repeat for 127770 particles. (took 0.00626433 sec) SUBFIND: ngb iteration 45: need to repeat for 25621 particles. (took 0.00262905 sec) SUBFIND: ngb iteration 46: need to repeat for 3762 particles. (took 0.000948118 sec) SUBFIND: ngb iteration 47: need to repeat for 337 particles. (took 0.000397533 sec) SUBFIND: ngb iteration 48: need to repeat for 36 particles. (took 0.000288935 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.90137 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997512 particles, for threshold size factor 0.6) SUBFIND: The other 1866784 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00400596 sec SUBFIND: particle balance=1.11169 SUBFIND: subfind_exchange() took 0.232829 sec SUBFIND: particle balance for processing=1.00018 SUBFIND: subdomain decomposition took 0.0514963 sec SUBFIND: serial subfind subdomain decomposition took 0.0508465 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2161 took 21.9253 sec SUBFIND: root-task=0: Serial processing of halo 0 took 22.0498 SUBFIND: Processing overall took (total time=22.8205 sec) SUBFIND: 0 out of 5859 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258485 ALLOCATE: Changing to MaxPartSph = 118300 SUBFIND: subfind_exchange() (for return to original CPU) took 0.258897 sec TREE: Full tree construction for all particles. (presently allocated=79.6949 MB) GRAVTREE: Tree construction done. took 0.770922 sec =86522.1 NTopnodes=37401 NTopleaves=32726 tree-build-scalability=0.568229 SUBFIND: SO iteration 1: need to repeat for 1866725 halo centers. (took 0.0201984 sec) SUBFIND: SO iteration 2: need to repeat for 1866725 halo centers. (took 0.018197 sec) SUBFIND: SO iteration 3: need to repeat for 1866725 halo centers. (took 0.0183612 sec) SUBFIND: SO iteration 4: need to repeat for 1866725 halo centers. (took 0.0181636 sec) SUBFIND: SO iteration 5: need to repeat for 1866725 halo centers. (took 0.0181873 sec) SUBFIND: SO iteration 6: need to repeat for 1866725 halo centers. (took 0.0181824 sec) SUBFIND: SO iteration 7: need to repeat for 1866725 halo centers. (took 0.0181481 sec) SUBFIND: SO iteration 8: need to repeat for 1866725 halo centers. (took 0.0180924 sec) SUBFIND: SO iteration 9: need to repeat for 1866725 halo centers. (took 0.0181255 sec) SUBFIND: SO iteration 10: need to repeat for 1866725 halo centers. (took 0.0181087 sec) SUBFIND: SO iteration 11: need to repeat for 1866725 halo centers. (took 0.0181495 sec) SUBFIND: SO iteration 12: need to repeat for 1866725 halo centers. (took 0.0180893 sec) SUBFIND: SO iteration 13: need to repeat for 1866725 halo centers. (took 0.0181127 sec) SUBFIND: SO iteration 14: need to repeat for 1866725 halo centers. (took 0.0181187 sec) SUBFIND: SO iteration 15: need to repeat for 1866725 halo centers. (took 0.0180983 sec) SUBFIND: SO iteration 16: need to repeat for 138177 halo centers. (took 0.0178131 sec) SUBFIND: SO iteration 17: need to repeat for 1532 halo centers. (took 0.00558559 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000321286 sec) SUBFIND: SO iteration 1: need to repeat for 1866725 halo centers. (took 0.0181673 sec) SUBFIND: SO iteration 2: need to repeat for 1866725 halo centers. (took 0.0178429 sec) SUBFIND: SO iteration 3: need to repeat for 1866725 halo centers. (took 0.0181855 sec) SUBFIND: SO iteration 4: need to repeat for 1866725 halo centers. (took 0.0180732 sec) SUBFIND: SO iteration 5: need to repeat for 1866725 halo centers. (took 0.0180985 sec) SUBFIND: SO iteration 6: need to repeat for 1866725 halo centers. (took 0.0181462 sec) SUBFIND: SO iteration 7: need to repeat for 1866725 halo centers. (took 0.0181326 sec) SUBFIND: SO iteration 8: need to repeat for 1866725 halo centers. (took 0.0181226 sec) SUBFIND: SO iteration 9: need to repeat for 1866725 halo centers. (took 0.0181506 sec) SUBFIND: SO iteration 10: need to repeat for 1866725 halo centers. (took 0.0181428 sec) SUBFIND: SO iteration 11: need to repeat for 1866725 halo centers. (took 0.0181612 sec) SUBFIND: SO iteration 12: need to repeat for 1866725 halo centers. (took 0.018129 sec) SUBFIND: SO iteration 13: need to repeat for 1866725 halo centers. (took 0.018117 sec) SUBFIND: SO iteration 14: need to repeat for 1866725 halo centers. (took 0.018131 sec) SUBFIND: SO iteration 15: need to repeat for 1866725 halo centers. (took 0.0181534 sec) SUBFIND: SO iteration 16: need to repeat for 80087 halo centers. (took 0.0178658 sec) SUBFIND: SO iteration 17: need to repeat for 354 halo centers. (took 0.00394516 sec) SUBFIND: SO iteration 1: need to repeat for 1866725 halo centers. (took 0.0184441 sec) SUBFIND: SO iteration 2: need to repeat for 1866725 halo centers. (took 0.018322 sec) SUBFIND: SO iteration 3: need to repeat for 1866725 halo centers. (took 0.0182432 sec) SUBFIND: SO iteration 4: need to repeat for 1866725 halo centers. (took 0.0183279 sec) SUBFIND: SO iteration 5: need to repeat for 1866725 halo centers. (took 0.0182773 sec) SUBFIND: SO iteration 6: need to repeat for 1866725 halo centers. (took 0.0184527 sec) SUBFIND: SO iteration 7: need to repeat for 1866725 halo centers. (took 0.0181407 sec) SUBFIND: SO iteration 8: need to repeat for 1866725 halo centers. (took 0.0181269 sec) SUBFIND: SO iteration 9: need to repeat for 1866725 halo centers. (took 0.018078 sec) SUBFIND: SO iteration 10: need to repeat for 1866725 halo centers. (took 0.0181617 sec) SUBFIND: SO iteration 11: need to repeat for 1866725 halo centers. (took 0.0180925 sec) SUBFIND: SO iteration 12: need to repeat for 1866725 halo centers. (took 0.0181573 sec) SUBFIND: SO iteration 13: need to repeat for 1866725 halo centers. (took 0.0181144 sec) SUBFIND: SO iteration 14: need to repeat for 1866725 halo centers. (took 0.0181211 sec) SUBFIND: SO iteration 15: need to repeat for 1866725 halo centers. (took 0.018133 sec) SUBFIND: SO iteration 16: need to repeat for 141703 halo centers. (took 0.0177658 sec) SUBFIND: SO iteration 17: need to repeat for 1551 halo centers. (took 0.00564727 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000301311 sec) SUBFIND: SO iteration 1: need to repeat for 1866725 halo centers. (took 0.0181353 sec) SUBFIND: SO iteration 2: need to repeat for 1866725 halo centers. (took 0.0180362 sec) SUBFIND: SO iteration 3: need to repeat for 1866725 halo centers. (took 0.0176466 sec) SUBFIND: SO iteration 4: need to repeat for 1866725 halo centers. (took 0.0178338 sec) SUBFIND: SO iteration 5: need to repeat for 1866725 halo centers. (took 0.0179576 sec) SUBFIND: SO iteration 6: need to repeat for 1866725 halo centers. (took 0.017828 sec) SUBFIND: SO iteration 7: need to repeat for 1866725 halo centers. (took 0.017831 sec) SUBFIND: SO iteration 8: need to repeat for 1866725 halo centers. (took 0.0178922 sec) SUBFIND: SO iteration 9: need to repeat for 1866725 halo centers. (took 0.0178914 sec) SUBFIND: SO iteration 10: need to repeat for 1866725 halo centers. (took 0.0178733 sec) SUBFIND: SO iteration 11: need to repeat for 1866725 halo centers. (took 0.0178844 sec) SUBFIND: SO iteration 12: need to repeat for 1866725 halo centers. (took 0.0178767 sec) SUBFIND: SO iteration 13: need to repeat for 1866725 halo centers. (took 0.0178764 sec) SUBFIND: SO iteration 14: need to repeat for 1866725 halo centers. (took 0.0178741 sec) SUBFIND: SO iteration 15: need to repeat for 1866725 halo centers. (took 0.0178679 sec) SUBFIND: SO iteration 16: need to repeat for 1552411 halo centers. (took 0.0178307 sec) SUBFIND: SO iteration 17: need to repeat for 126865 halo centers. (took 0.0159407 sec) SUBFIND: SO iteration 18: need to repeat for 17266 halo centers. (took 0.0052187 sec) SUBFIND: determining spherical overdensity masses took 1.20084 sec SUBFIND: assembled and ordered groups and subhalos (took 0.250023 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.28169 sec, total size 699.067 MB, corresponds to effective I/O rate of 163.269 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.28291 sec SUBFIND: Finished with SUBFIND. (total time=36.9194 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1872549 SUBFIND: Largest subhalo has 72 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133992468 FOF: preparing output order of particles took 0.973716 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.46279 sec, total size 5302.27 MB, corresponds to effective I/O rate of 626.539 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 466 (rank 466 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 463 (rank 463 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.