TACC: Starting up job 4243127 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186343.71 Mb (on task= 756), Smallest = 186204.39 Mb (on task= 0), Average = 186289.96 Mb Total Mem: Largest = 191386.89 Mb (on task= 837), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5182.50 Mb (on task= 0), Smallest = 5043.18 Mb (on task= 756), Average = 5096.93 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5182.50 Mb (on task= 0), Smallest = 5043.18 Mb (on task= 756), Average = 5096.93 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 513), Smallest = 95257.16 Mb (on task= 809), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c203-010.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.1621 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 61437400 (tot= 61437400) masstab= 0 READIC: Type 1: 72557956 (tot= 72557956) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 2102 (tot= 2102) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.70862 sec, total size 6368.28 MB, corresponds to effective I/O rate of 1352.47 MB/sec READIC: Total number of particles : 133997458 INIT: Testing ID uniqueness... INIT: success. took=0.0604123 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32740, determination of top-level tree involved 6 iterations and took 0.379369 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=175 for nextra=125, reaching maximum imbalance of 1.1116|1.11203 DOMAIN: combining multiple-domains took 0.015483 sec DOMAIN: exchange of 72560058 particles DOMAIN: particle exchange done. (took 0.216073 sec) DOMAIN: domain decomposition done. (took in total 0.616775 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0329856 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=85.7303 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0522723 sec =71288.9 NTopnodes=37417 NTopleaves=32740 FOF: Start linking particles (presently allocated=97.5094 MB) FOF: linking of small cells took 0.000804681 sec FOF: local links done (took 0.0770469 sec, avg-work=0.0679111, imbalance=1.12494). FOF: Marked=184244 out of the 72557956 primaries which are linked FOF: begin linking across processors (presently allocated=98.5331 MB) FOF: have done 16528 cross links (processed 184244, took 0.00386157 sec) FOF: have done 3434 cross links (processed 90683, took 0.00309606 sec) FOF: have done 562 cross links (processed 12641, took 0.00258545 sec) FOF: have done 91 cross links (processed 1986, took 0.00237088 sec) FOF: have done 17 cross links (processed 306, took 0.0024622 sec) FOF: have done 2 cross links (processed 62, took 0.00231753 sec) FOF: have done 0 cross links (processed 7, took 0.00226536 sec) FOF: Local groups found. FOF: primary group finding took = 0.101302 sec FOF: Start finding nearest dm-particle (presently allocated=97.5094 MB) FOF: fof-nearest iteration 1: need to repeat for 60269072 particles. (took = 0.0455973 sec) FOF: fof-nearest iteration 2: need to repeat for 54646530 particles. (took = 0.0498073 sec) FOF: fof-nearest iteration 3: need to repeat for 38893471 particles. (took = 0.0541579 sec) FOF: fof-nearest iteration 4: need to repeat for 17094678 particles. (took = 0.0471176 sec) FOF: fof-nearest iteration 5: need to repeat for 2885288 particles. (took = 0.0265044 sec) FOF: fof-nearest iteration 6: need to repeat for 76633 particles. (took = 0.00724193 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.234689 sec FOF: compiling local group data and catalogue took = 0.0129849 sec FOF: Total number of FOF groups with at least 32 particles: 1836434 FOF: Largest FOF group has 148 particles. FOF: Total number of particles in FOF groups: 133997458 FOF: group properties are now allocated.. (presently allocated=88.9232 MB) FOF: computation of group properties took = 0.00592818 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.245887 sec FOF: Finished computing FoF groups. Complete work took 0.770105 sec (presently allocated=86.4923 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.6404 MB) GRAVTREE: Tree construction done. took 0.153813 sec =86277.6 NTopnodes=37417 NTopleaves=32740 tree-build-scalability=0.56682 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133684881 particles. (took 0.413926 sec) SUBFIND: ngb iteration 2: need to repeat for 133237376 particles. (took 0.35322 sec) SUBFIND: ngb iteration 3: need to repeat for 132605430 particles. (took 0.323206 sec) SUBFIND: ngb iteration 4: need to repeat for 131620616 particles. (took 0.307492 sec) SUBFIND: ngb iteration 5: need to repeat for 129885055 particles. (took 0.298546 sec) SUBFIND: ngb iteration 6: need to repeat for 126601987 particles. (took 0.298528 sec) SUBFIND: ngb iteration 7: need to repeat for 120295745 particles. (took 0.297411 sec) SUBFIND: ngb iteration 8: need to repeat for 109212631 particles. (took 0.287203 sec) SUBFIND: ngb iteration 9: need to repeat for 94104312 particles. (took 0.260344 sec) SUBFIND: ngb iteration 10: need to repeat for 80266614 particles. (took 0.220368 sec) SUBFIND: ngb iteration 11: need to repeat for 71255579 particles. (took 0.181921 sec) SUBFIND: ngb iteration 12: need to repeat for 66410671 particles. (took 0.15975 sec) SUBFIND: ngb iteration 13: need to repeat for 63989051 particles. (took 0.149061 sec) SUBFIND: ngb iteration 14: need to repeat for 62776841 particles. (took 0.144599 sec) SUBFIND: ngb iteration 15: need to repeat for 62139075 particles. (took 0.139334 sec) SUBFIND: ngb iteration 16: need to repeat for 61771453 particles. (took 0.131509 sec) SUBFIND: ngb iteration 17: need to repeat for 61538184 particles. (took 0.122087 sec) SUBFIND: ngb iteration 18: need to repeat for 61372017 particles. (took 0.112499 sec) SUBFIND: ngb iteration 19: need to repeat for 61240878 particles. (took 0.104472 sec) SUBFIND: ngb iteration 20: need to repeat for 61118222 particles. (took 0.0992609 sec) SUBFIND: ngb iteration 21: need to repeat for 60980534 particles. (took 0.097536 sec) SUBFIND: ngb iteration 22: need to repeat for 60806740 particles. (took 0.0975934 sec) SUBFIND: ngb iteration 23: need to repeat for 60572642 particles. (took 0.0985536 sec) SUBFIND: ngb iteration 24: need to repeat for 60258676 particles. (took 0.10077 sec) SUBFIND: ngb iteration 25: need to repeat for 59830619 particles. (took 0.103604 sec) SUBFIND: ngb iteration 26: need to repeat for 59234731 particles. (took 0.108137 sec) SUBFIND: ngb iteration 27: need to repeat for 58421565 particles. (took 0.114018 sec) SUBFIND: ngb iteration 28: need to repeat for 57326482 particles. (took 0.122679 sec) SUBFIND: ngb iteration 29: need to repeat for 55866011 particles. (took 0.133439 sec) SUBFIND: ngb iteration 30: need to repeat for 53957066 particles. (took 0.146251 sec) SUBFIND: ngb iteration 31: need to repeat for 51514117 particles. (took 0.156919 sec) SUBFIND: ngb iteration 32: need to repeat for 48444993 particles. (took 0.166878 sec) SUBFIND: ngb iteration 33: need to repeat for 44647696 particles. (took 0.172231 sec) SUBFIND: ngb iteration 34: need to repeat for 40054236 particles. (took 0.170389 sec) SUBFIND: ngb iteration 35: need to repeat for 34678210 particles. (took 0.160546 sec) SUBFIND: ngb iteration 36: need to repeat for 28679005 particles. (took 0.145045 sec) SUBFIND: ngb iteration 37: need to repeat for 22392871 particles. (took 0.125137 sec) SUBFIND: ngb iteration 38: need to repeat for 16261019 particles. (took 0.103964 sec) SUBFIND: ngb iteration 39: need to repeat for 10784095 particles. (took 0.0820938 sec) SUBFIND: ngb iteration 40: need to repeat for 6391567 particles. (took 0.061031 sec) SUBFIND: ngb iteration 41: need to repeat for 3304404 particles. (took 0.0413196 sec) SUBFIND: ngb iteration 42: need to repeat for 1443887 particles. (took 0.0251898 sec) SUBFIND: ngb iteration 43: need to repeat for 516311 particles. (took 0.0135379 sec) SUBFIND: ngb iteration 44: need to repeat for 145504 particles. (took 0.00629198 sec) SUBFIND: ngb iteration 45: need to repeat for 30400 particles. (took 0.00283527 sec) SUBFIND: ngb iteration 46: need to repeat for 4756 particles. (took 0.00109927 sec) SUBFIND: ngb iteration 47: need to repeat for 533 particles. (took 0.000526609 sec) SUBFIND: ngb iteration 48: need to repeat for 45 particles. (took 0.000291992 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.96681 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997458 particles, for threshold size factor 0.6) SUBFIND: The other 1836434 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00414391 sec SUBFIND: particle balance=1.1116 SUBFIND: subfind_exchange() took 0.232437 sec SUBFIND: particle balance for processing=1.00072 SUBFIND: subdomain decomposition took 0.0513093 sec SUBFIND: serial subfind subdomain decomposition took 0.0509708 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2126 took 21.4812 sec SUBFIND: root-task=0: Serial processing of halo 0 took 21.6048 SUBFIND: Processing overall took (total time=22.4759 sec) SUBFIND: 0 out of 6062 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258486 ALLOCATE: Changing to MaxPartSph = 118515 SUBFIND: subfind_exchange() (for return to original CPU) took 0.259635 sec TREE: Full tree construction for all particles. (presently allocated=79.4621 MB) GRAVTREE: Tree construction done. took 0.764681 sec =86277.6 NTopnodes=37417 NTopleaves=32740 tree-build-scalability=0.56682 SUBFIND: SO iteration 1: need to repeat for 1836382 halo centers. (took 0.0200567 sec) SUBFIND: SO iteration 2: need to repeat for 1836382 halo centers. (took 0.0180629 sec) SUBFIND: SO iteration 3: need to repeat for 1836382 halo centers. (took 0.0182109 sec) SUBFIND: SO iteration 4: need to repeat for 1836382 halo centers. (took 0.0181563 sec) SUBFIND: SO iteration 5: need to repeat for 1836382 halo centers. (took 0.018029 sec) SUBFIND: SO iteration 6: need to repeat for 1836382 halo centers. (took 0.0180969 sec) SUBFIND: SO iteration 7: need to repeat for 1836382 halo centers. (took 0.0180451 sec) SUBFIND: SO iteration 8: need to repeat for 1836382 halo centers. (took 0.0180834 sec) SUBFIND: SO iteration 9: need to repeat for 1836382 halo centers. (took 0.0181628 sec) SUBFIND: SO iteration 10: need to repeat for 1836382 halo centers. (took 0.0180455 sec) SUBFIND: SO iteration 11: need to repeat for 1836382 halo centers. (took 0.0180656 sec) SUBFIND: SO iteration 12: need to repeat for 1836382 halo centers. (took 0.018298 sec) SUBFIND: SO iteration 13: need to repeat for 1836382 halo centers. (took 0.0182925 sec) SUBFIND: SO iteration 14: need to repeat for 1836382 halo centers. (took 0.0180614 sec) SUBFIND: SO iteration 15: need to repeat for 1836382 halo centers. (took 0.018013 sec) SUBFIND: SO iteration 16: need to repeat for 133067 halo centers. (took 0.0177873 sec) SUBFIND: SO iteration 17: need to repeat for 1540 halo centers. (took 0.00545244 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.00030479 sec) SUBFIND: SO iteration 1: need to repeat for 1836382 halo centers. (took 0.0181886 sec) SUBFIND: SO iteration 2: need to repeat for 1836382 halo centers. (took 0.0177297 sec) SUBFIND: SO iteration 3: need to repeat for 1836382 halo centers. (took 0.0181998 sec) SUBFIND: SO iteration 4: need to repeat for 1836382 halo centers. (took 0.0180743 sec) SUBFIND: SO iteration 5: need to repeat for 1836382 halo centers. (took 0.018042 sec) SUBFIND: SO iteration 6: need to repeat for 1836382 halo centers. (took 0.0180881 sec) SUBFIND: SO iteration 7: need to repeat for 1836382 halo centers. (took 0.0179935 sec) SUBFIND: SO iteration 8: need to repeat for 1836382 halo centers. (took 0.0180237 sec) SUBFIND: SO iteration 9: need to repeat for 1836382 halo centers. (took 0.0180159 sec) SUBFIND: SO iteration 10: need to repeat for 1836382 halo centers. (took 0.018036 sec) SUBFIND: SO iteration 11: need to repeat for 1836382 halo centers. (took 0.0181327 sec) SUBFIND: SO iteration 12: need to repeat for 1836382 halo centers. (took 0.0181404 sec) SUBFIND: SO iteration 13: need to repeat for 1836382 halo centers. (took 0.0180626 sec) SUBFIND: SO iteration 14: need to repeat for 1836382 halo centers. (took 0.0182576 sec) SUBFIND: SO iteration 15: need to repeat for 1836382 halo centers. (took 0.0185228 sec) SUBFIND: SO iteration 16: need to repeat for 77154 halo centers. (took 0.0181243 sec) SUBFIND: SO iteration 17: need to repeat for 336 halo centers. (took 0.00387693 sec) SUBFIND: SO iteration 1: need to repeat for 1836382 halo centers. (took 0.0184706 sec) SUBFIND: SO iteration 2: need to repeat for 1836382 halo centers. (took 0.0182226 sec) SUBFIND: SO iteration 3: need to repeat for 1836382 halo centers. (took 0.018661 sec) SUBFIND: SO iteration 4: need to repeat for 1836382 halo centers. (took 0.0183817 sec) SUBFIND: SO iteration 5: need to repeat for 1836382 halo centers. (took 0.0183057 sec) SUBFIND: SO iteration 6: need to repeat for 1836382 halo centers. (took 0.0180371 sec) SUBFIND: SO iteration 7: need to repeat for 1836382 halo centers. (took 0.0180262 sec) SUBFIND: SO iteration 8: need to repeat for 1836382 halo centers. (took 0.0181902 sec) SUBFIND: SO iteration 9: need to repeat for 1836382 halo centers. (took 0.0181201 sec) SUBFIND: SO iteration 10: need to repeat for 1836382 halo centers. (took 0.0180516 sec) SUBFIND: SO iteration 11: need to repeat for 1836382 halo centers. (took 0.0180227 sec) SUBFIND: SO iteration 12: need to repeat for 1836382 halo centers. (took 0.0182037 sec) SUBFIND: SO iteration 13: need to repeat for 1836382 halo centers. (took 0.018046 sec) SUBFIND: SO iteration 14: need to repeat for 1836382 halo centers. (took 0.0180583 sec) SUBFIND: SO iteration 15: need to repeat for 1836382 halo centers. (took 0.0180312 sec) SUBFIND: SO iteration 16: need to repeat for 136274 halo centers. (took 0.017741 sec) SUBFIND: SO iteration 17: need to repeat for 1560 halo centers. (took 0.00550986 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000308251 sec) SUBFIND: SO iteration 1: need to repeat for 1836382 halo centers. (took 0.0180154 sec) SUBFIND: SO iteration 2: need to repeat for 1836382 halo centers. (took 0.0179213 sec) SUBFIND: SO iteration 3: need to repeat for 1836382 halo centers. (took 0.0175241 sec) SUBFIND: SO iteration 4: need to repeat for 1836382 halo centers. (took 0.0177909 sec) SUBFIND: SO iteration 5: need to repeat for 1836382 halo centers. (took 0.0177821 sec) SUBFIND: SO iteration 6: need to repeat for 1836382 halo centers. (took 0.0177566 sec) SUBFIND: SO iteration 7: need to repeat for 1836382 halo centers. (took 0.0177803 sec) SUBFIND: SO iteration 8: need to repeat for 1836382 halo centers. (took 0.0177921 sec) SUBFIND: SO iteration 9: need to repeat for 1836382 halo centers. (took 0.0177529 sec) SUBFIND: SO iteration 10: need to repeat for 1836382 halo centers. (took 0.0178003 sec) SUBFIND: SO iteration 11: need to repeat for 1836382 halo centers. (took 0.0177925 sec) SUBFIND: SO iteration 12: need to repeat for 1836382 halo centers. (took 0.0177635 sec) SUBFIND: SO iteration 13: need to repeat for 1836382 halo centers. (took 0.0177499 sec) SUBFIND: SO iteration 14: need to repeat for 1836382 halo centers. (took 0.0180304 sec) SUBFIND: SO iteration 15: need to repeat for 1836382 halo centers. (took 0.0181648 sec) SUBFIND: SO iteration 16: need to repeat for 1519648 halo centers. (took 0.0181148 sec) SUBFIND: SO iteration 17: need to repeat for 124409 halo centers. (took 0.0162557 sec) SUBFIND: SO iteration 18: need to repeat for 16829 halo centers. (took 0.00540874 sec) SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.00125979 sec) SUBFIND: determining spherical overdensity masses took 1.19987 sec SUBFIND: assembled and ordered groups and subhalos (took 0.262479 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.28877 sec, total size 687.764 MB, corresponds to effective I/O rate of 160.364 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.29 sec SUBFIND: Finished with SUBFIND. (total time=36.6539 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1842408 SUBFIND: Largest subhalo has 148 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133992892 FOF: preparing output order of particles took 0.974686 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.58366 sec, total size 5303.53 MB, corresponds to effective I/O rate of 617.864 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 154 (rank 154 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 156 (rank 156 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.