TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186490.07 Mb (on task= 81), Smallest = 186404.32 Mb (on task= 0), Average = 186448.61 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5111.01 Mb (on task= 0), Smallest = 5025.12 Mb (on task= 81), Average = 5066.72 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5111.01 Mb (on task= 0), Smallest = 5025.12 Mb (on task= 81), Average = 5066.72 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 303), Smallest = 95321.40 Mb (on task= 95), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 17.0194 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 61767980 (tot= 61767980) masstab= 0 READIC: Type 1: 72226840 (tot= 72226840) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 2692 (tot= 2692) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.01995 sec, total size 6369.55 MB, corresponds to effective I/O rate of 1584.48 MB/sec READIC: Total number of particles : 133997512 INIT: Testing ID uniqueness... INIT: success. took=0.0816402 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=16010, determination of top-level tree involved 5 iterations and took 0.628128 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=190 for nextra=122, reaching maximum imbalance of 1.12365|1.12365 DOMAIN: combining multiple-domains took 0.0133933 sec DOMAIN: exchange of 72229532 particles DOMAIN: particle exchange done. (took 0.375141 sec) DOMAIN: domain decomposition done. (took in total 1.02719 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0747402 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=170.873 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0904923 sec =84617.8 NTopnodes=18297 NTopleaves=16010 FOF: Start linking particles (presently allocated=195 MB) FOF: linking of small cells took 0.00195162 sec FOF: local links done (took 0.154651 sec, avg-work=0.135843, imbalance=1.13367). FOF: Marked=146048 out of the 72226840 primaries which are linked FOF: begin linking across processors (presently allocated=196.943 MB) FOF: have done 12475 cross links (processed 146048, took 0.00627031 sec) FOF: have done 2613 cross links (processed 69821, took 0.00544145 sec) FOF: have done 419 cross links (processed 9715, took 0.00483424 sec) FOF: have done 76 cross links (processed 1557, took 0.00462527 sec) FOF: have done 10 cross links (processed 274, took 0.00442049 sec) FOF: have done 2 cross links (processed 32, took 0.00444681 sec) FOF: have done 0 cross links (processed 5, took 0.00443952 sec) FOF: Local groups found. FOF: primary group finding took = 0.2016 sec FOF: Start finding nearest dm-particle (presently allocated=195 MB) FOF: fof-nearest iteration 1: need to repeat for 60546796 particles. (took = 0.0916292 sec) FOF: fof-nearest iteration 2: need to repeat for 54687782 particles. (took = 0.101047 sec) FOF: fof-nearest iteration 3: need to repeat for 38497645 particles. (took = 0.109852 sec) FOF: fof-nearest iteration 4: need to repeat for 16588201 particles. (took = 0.0949421 sec) FOF: fof-nearest iteration 5: need to repeat for 2753642 particles. (took = 0.0519964 sec) FOF: fof-nearest iteration 6: need to repeat for 73587 particles. (took = 0.0137493 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.471909 sec FOF: compiling local group data and catalogue took = 0.0272757 sec FOF: Total number of FOF groups with at least 32 particles: 1750419 FOF: Largest FOF group has 154 particles. FOF: Total number of particles in FOF groups: 133997512 FOF: group properties are now allocated.. (presently allocated=177.597 MB) FOF: computation of group properties took = 0.0119244 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.11141 sec FOF: Finished computing FoF groups. Complete work took 0.977962 sec (presently allocated=172.417 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=182.799 MB) GRAVTREE: Tree construction done. took 0.302554 sec =114604 NTopnodes=18297 NTopleaves=16010 tree-build-scalability=0.840716 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133807176 particles. (took 0.806215 sec) SUBFIND: ngb iteration 2: need to repeat for 133515940 particles. (took 0.698417 sec) SUBFIND: ngb iteration 3: need to repeat for 133040772 particles. (took 0.645294 sec) SUBFIND: ngb iteration 4: need to repeat for 132216086 particles. (took 0.613939 sec) SUBFIND: ngb iteration 5: need to repeat for 130661408 particles. (took 0.598026 sec) SUBFIND: ngb iteration 6: need to repeat for 127635220 particles. (took 0.602825 sec) SUBFIND: ngb iteration 7: need to repeat for 121738416 particles. (took 0.606322 sec) SUBFIND: ngb iteration 8: need to repeat for 111149013 particles. (took 0.5897 sec) SUBFIND: ngb iteration 9: need to repeat for 96141810 particles. (took 0.540732 sec) SUBFIND: ngb iteration 10: need to repeat for 81808952 particles. (took 0.461258 sec) SUBFIND: ngb iteration 11: need to repeat for 72269864 particles. (took 0.38168 sec) SUBFIND: ngb iteration 12: need to repeat for 67082916 particles. (took 0.331452 sec) SUBFIND: ngb iteration 13: need to repeat for 64499263 particles. (took 0.308353 sec) SUBFIND: ngb iteration 14: need to repeat for 63214316 particles. (took 0.298198 sec) SUBFIND: ngb iteration 15: need to repeat for 62534249 particles. (took 0.287707 sec) SUBFIND: ngb iteration 16: need to repeat for 62142122 particles. (took 0.272401 sec) SUBFIND: ngb iteration 17: need to repeat for 61893454 particles. (took 0.252714 sec) SUBFIND: ngb iteration 18: need to repeat for 61718828 particles. (took 0.2314 sec) SUBFIND: ngb iteration 19: need to repeat for 61582418 particles. (took 0.213706 sec) SUBFIND: ngb iteration 20: need to repeat for 61457463 particles. (took 0.203604 sec) SUBFIND: ngb iteration 21: need to repeat for 61322338 particles. (took 0.19956 sec) SUBFIND: ngb iteration 22: need to repeat for 61158166 particles. (took 0.200676 sec) SUBFIND: ngb iteration 23: need to repeat for 60940630 particles. (took 0.20308 sec) SUBFIND: ngb iteration 24: need to repeat for 60652602 particles. (took 0.20606 sec) SUBFIND: ngb iteration 25: need to repeat for 60259099 particles. (took 0.211772 sec) SUBFIND: ngb iteration 26: need to repeat for 59718564 particles. (took 0.219489 sec) SUBFIND: ngb iteration 27: need to repeat for 58984189 particles. (took 0.231049 sec) SUBFIND: ngb iteration 28: need to repeat for 57981425 particles. (took 0.249006 sec) SUBFIND: ngb iteration 29: need to repeat for 56646511 particles. (took 0.26917 sec) SUBFIND: ngb iteration 30: need to repeat for 54878234 particles. (took 0.295351 sec) SUBFIND: ngb iteration 31: need to repeat for 52578974 particles. (took 0.319235 sec) SUBFIND: ngb iteration 32: need to repeat for 49646426 particles. (took 0.336943 sec) SUBFIND: ngb iteration 33: need to repeat for 45977550 particles. (took 0.351509 sec) SUBFIND: ngb iteration 34: need to repeat for 41499238 particles. (took 0.351712 sec) SUBFIND: ngb iteration 35: need to repeat for 36217709 particles. (took 0.332822 sec) SUBFIND: ngb iteration 36: need to repeat for 30271641 particles. (took 0.299674 sec) SUBFIND: ngb iteration 37: need to repeat for 23943805 particles. (took 0.261976 sec) SUBFIND: ngb iteration 38: need to repeat for 17671518 particles. (took 0.217272 sec) SUBFIND: ngb iteration 39: need to repeat for 11952757 particles. (took 0.172092 sec) SUBFIND: ngb iteration 40: need to repeat for 7271013 particles. (took 0.12567 sec) SUBFIND: ngb iteration 41: need to repeat for 3872912 particles. (took 0.0837825 sec) SUBFIND: ngb iteration 42: need to repeat for 1756066 particles. (took 0.0510812 sec) SUBFIND: ngb iteration 43: need to repeat for 654543 particles. (took 0.0279561 sec) SUBFIND: ngb iteration 44: need to repeat for 190904 particles. (took 0.0135861 sec) SUBFIND: ngb iteration 45: need to repeat for 42570 particles. (took 0.0057149 sec) SUBFIND: ngb iteration 46: need to repeat for 7017 particles. (took 0.00209747 sec) SUBFIND: ngb iteration 47: need to repeat for 807 particles. (took 0.000652233 sec) SUBFIND: ngb iteration 48: need to repeat for 67 particles. (took 0.00026742 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 14.192 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997512 particles, for threshold size factor 0.6) SUBFIND: The other 1750419 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00506576 sec SUBFIND: particle balance=1.12365 SUBFIND: subfind_exchange() took 0.452719 sec SUBFIND: particle balance for processing=1.00027 SUBFIND: subdomain decomposition took 0.105003 sec SUBFIND: serial subfind subdomain decomposition took 0.103456 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=4052 took 96.3344 sec SUBFIND: root-task=0: Serial processing of halo 0 took 96.5892 SUBFIND: Processing overall took (total time=97.3713 sec) SUBFIND: 0 out of 7140 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 238303 SUBFIND: subfind_exchange() (for return to original CPU) took 0.513526 sec TREE: Full tree construction for all particles. (presently allocated=160.403 MB) GRAVTREE: Tree construction done. took 1.48086 sec =114604 NTopnodes=18297 NTopleaves=16010 tree-build-scalability=0.840716 SUBFIND: SO iteration 1: need to repeat for 1750380 halo centers. (took 0.0299568 sec) SUBFIND: SO iteration 2: need to repeat for 1750380 halo centers. (took 0.0240123 sec) SUBFIND: SO iteration 3: need to repeat for 1750380 halo centers. (took 0.0252122 sec) SUBFIND: SO iteration 4: need to repeat for 1750380 halo centers. (took 0.0241674 sec) SUBFIND: SO iteration 5: need to repeat for 1750380 halo centers. (took 0.0241236 sec) SUBFIND: SO iteration 6: need to repeat for 1750380 halo centers. (took 0.0241692 sec) SUBFIND: SO iteration 7: need to repeat for 1750380 halo centers. (took 0.0240145 sec) SUBFIND: SO iteration 8: need to repeat for 1750380 halo centers. (took 0.0242258 sec) SUBFIND: SO iteration 9: need to repeat for 1750380 halo centers. (took 0.0239469 sec) SUBFIND: SO iteration 10: need to repeat for 1750380 halo centers. (took 0.0239989 sec) SUBFIND: SO iteration 11: need to repeat for 1750380 halo centers. (took 0.0244643 sec) SUBFIND: SO iteration 12: need to repeat for 1750380 halo centers. (took 0.0248878 sec) SUBFIND: SO iteration 13: need to repeat for 1750380 halo centers. (took 0.0240053 sec) SUBFIND: SO iteration 14: need to repeat for 1750380 halo centers. (took 0.0240137 sec) SUBFIND: SO iteration 15: need to repeat for 1750380 halo centers. (took 0.0239497 sec) SUBFIND: SO iteration 16: need to repeat for 118721 halo centers. (took 0.0249701 sec) SUBFIND: SO iteration 17: need to repeat for 1556 halo centers. (took 0.00580182 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000348747 sec) SUBFIND: SO iteration 1: need to repeat for 1750380 halo centers. (took 0.0242666 sec) SUBFIND: SO iteration 2: need to repeat for 1750380 halo centers. (took 0.0234941 sec) SUBFIND: SO iteration 3: need to repeat for 1750380 halo centers. (took 0.0241017 sec) SUBFIND: SO iteration 4: need to repeat for 1750380 halo centers. (took 0.0246701 sec) SUBFIND: SO iteration 5: need to repeat for 1750380 halo centers. (took 0.0240361 sec) SUBFIND: SO iteration 6: need to repeat for 1750380 halo centers. (took 0.0242811 sec) SUBFIND: SO iteration 7: need to repeat for 1750380 halo centers. (took 0.0239349 sec) SUBFIND: SO iteration 8: need to repeat for 1750380 halo centers. (took 0.0239217 sec) SUBFIND: SO iteration 9: need to repeat for 1750380 halo centers. (took 0.0239255 sec) SUBFIND: SO iteration 10: need to repeat for 1750380 halo centers. (took 0.0239642 sec) SUBFIND: SO iteration 11: need to repeat for 1750380 halo centers. (took 0.0239545 sec) SUBFIND: SO iteration 12: need to repeat for 1750380 halo centers. (took 0.0239586 sec) SUBFIND: SO iteration 13: need to repeat for 1750380 halo centers. (took 0.0239689 sec) SUBFIND: SO iteration 14: need to repeat for 1750380 halo centers. (took 0.0239192 sec) SUBFIND: SO iteration 15: need to repeat for 1750380 halo centers. (took 0.023929 sec) SUBFIND: SO iteration 16: need to repeat for 68320 halo centers. (took 0.0248629 sec) SUBFIND: SO iteration 17: need to repeat for 331 halo centers. (took 0.00464946 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000212483 sec) SUBFIND: SO iteration 1: need to repeat for 1750380 halo centers. (took 0.0259125 sec) SUBFIND: SO iteration 2: need to repeat for 1750380 halo centers. (took 0.0238492 sec) SUBFIND: SO iteration 3: need to repeat for 1750380 halo centers. (took 0.0244656 sec) SUBFIND: SO iteration 4: need to repeat for 1750380 halo centers. (took 0.0243232 sec) SUBFIND: SO iteration 5: need to repeat for 1750380 halo centers. (took 0.0239521 sec) SUBFIND: SO iteration 6: need to repeat for 1750380 halo centers. (took 0.0246477 sec) SUBFIND: SO iteration 7: need to repeat for 1750380 halo centers. (took 0.0240111 sec) SUBFIND: SO iteration 8: need to repeat for 1750380 halo centers. (took 0.0239625 sec) SUBFIND: SO iteration 9: need to repeat for 1750380 halo centers. (took 0.0240158 sec) SUBFIND: SO iteration 10: need to repeat for 1750380 halo centers. (took 0.0240329 sec) SUBFIND: SO iteration 11: need to repeat for 1750380 halo centers. (took 0.0239622 sec) SUBFIND: SO iteration 12: need to repeat for 1750380 halo centers. (took 0.0239247 sec) SUBFIND: SO iteration 13: need to repeat for 1750380 halo centers. (took 0.0240865 sec) SUBFIND: SO iteration 14: need to repeat for 1750380 halo centers. (took 0.024024 sec) SUBFIND: SO iteration 15: need to repeat for 1750380 halo centers. (took 0.0241039 sec) SUBFIND: SO iteration 16: need to repeat for 121209 halo centers. (took 0.0234082 sec) SUBFIND: SO iteration 17: need to repeat for 1578 halo centers. (took 0.00571699 sec) SUBFIND: SO iteration 18: need to repeat for 4 halo centers. (took 0.000367669 sec) SUBFIND: SO iteration 1: need to repeat for 1750380 halo centers. (took 0.0241911 sec) SUBFIND: SO iteration 2: need to repeat for 1750380 halo centers. (took 0.0242874 sec) SUBFIND: SO iteration 3: need to repeat for 1750380 halo centers. (took 0.0231195 sec) SUBFIND: SO iteration 4: need to repeat for 1750380 halo centers. (took 0.0247506 sec) SUBFIND: SO iteration 5: need to repeat for 1750380 halo centers. (took 0.0240107 sec) SUBFIND: SO iteration 6: need to repeat for 1750380 halo centers. (took 0.0236718 sec) SUBFIND: SO iteration 7: need to repeat for 1750380 halo centers. (took 0.0235582 sec) SUBFIND: SO iteration 8: need to repeat for 1750380 halo centers. (took 0.0237989 sec) SUBFIND: SO iteration 9: need to repeat for 1750380 halo centers. (took 0.02349 sec) SUBFIND: SO iteration 10: need to repeat for 1750380 halo centers. (took 0.0237151 sec) SUBFIND: SO iteration 11: need to repeat for 1750380 halo centers. (took 0.0237938 sec) SUBFIND: SO iteration 12: need to repeat for 1750380 halo centers. (took 0.023947 sec) SUBFIND: SO iteration 13: need to repeat for 1750380 halo centers. (took 0.025671 sec) SUBFIND: SO iteration 14: need to repeat for 1750380 halo centers. (took 0.0240201 sec) SUBFIND: SO iteration 15: need to repeat for 1750380 halo centers. (took 0.0244145 sec) SUBFIND: SO iteration 16: need to repeat for 1423651 halo centers. (took 0.023805 sec) SUBFIND: SO iteration 17: need to repeat for 113764 halo centers. (took 0.0201141 sec) SUBFIND: SO iteration 18: need to repeat for 13893 halo centers. (took 0.0060981 sec) SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.00156403 sec) SUBFIND: determining spherical overdensity masses took 1.60033 sec SUBFIND: assembled and ordered groups and subhalos (took 0.098922 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.58041 sec, total size 655.831 MB, corresponds to effective I/O rate of 414.976 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.58173 sec SUBFIND: Finished with SUBFIND. (total time=117.676 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1757478 SUBFIND: Largest subhalo has 154 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133993845 FOF: preparing output order of particles took 1.47345 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.45061 sec, total size 5307.32 MB, corresponds to effective I/O rate of 712.333 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 214 (rank 214 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 222 (rank 222 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 223 (rank 223 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 213 (rank 213 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.