TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186497.81 Mb (on task= 189), Smallest = 186394.80 Mb (on task= 0), Average = 186448.95 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5120.53 Mb (on task= 0), Smallest = 5017.52 Mb (on task= 189), Average = 5066.37 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5120.53 Mb (on task= 0), Smallest = 5017.52 Mb (on task= 189), Average = 5066.37 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 297), Smallest = 95321.41 Mb (on task= 104), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.5853 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 62106045 (tot= 62106045) masstab= 0 READIC: Type 1: 71887882 (tot= 71887882) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 3476 (tot= 3476) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.04131 sec, total size 6370.83 MB, corresponds to effective I/O rate of 1576.43 MB/sec READIC: Total number of particles : 133997403 INIT: Testing ID uniqueness... INIT: success. took=0.0750181 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=15919, determination of top-level tree involved 5 iterations and took 0.632445 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11947|1.11973 DOMAIN: combining multiple-domains took 0.0135132 sec DOMAIN: exchange of 71891358 particles DOMAIN: particle exchange done. (took 0.38595 sec) DOMAIN: domain decomposition done. (took in total 1.04242 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0728756 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=171.125 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0895877 sec =83080.7 NTopnodes=18193 NTopleaves=15919 FOF: Start linking particles (presently allocated=194.961 MB) FOF: linking of small cells took 0.00188752 sec FOF: local links done (took 0.154316 sec, avg-work=0.136179, imbalance=1.12724). FOF: Marked=148067 out of the 71887882 primaries which are linked FOF: begin linking across processors (presently allocated=196.855 MB) FOF: have done 12551 cross links (processed 148067, took 0.00626496 sec) FOF: have done 2673 cross links (processed 70427, took 0.00544692 sec) FOF: have done 468 cross links (processed 10158, took 0.00487066 sec) FOF: have done 77 cross links (processed 1695, took 0.0045896 sec) FOF: have done 11 cross links (processed 250, took 0.00462414 sec) FOF: have done 2 cross links (processed 27, took 0.00447312 sec) FOF: have done 0 cross links (processed 7, took 0.00440464 sec) FOF: Local groups found. FOF: primary group finding took = 0.201171 sec FOF: Start finding nearest dm-particle (presently allocated=194.961 MB) FOF: fof-nearest iteration 1: need to repeat for 60823819 particles. (took = 0.0913834 sec) FOF: fof-nearest iteration 2: need to repeat for 54694565 particles. (took = 0.100979 sec) FOF: fof-nearest iteration 3: need to repeat for 38033352 particles. (took = 0.109678 sec) FOF: fof-nearest iteration 4: need to repeat for 16048950 particles. (took = 0.093659 sec) FOF: fof-nearest iteration 5: need to repeat for 2611086 particles. (took = 0.050464 sec) FOF: fof-nearest iteration 6: need to repeat for 69856 particles. (took = 0.013134 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.467777 sec FOF: compiling local group data and catalogue took = 0.027191 sec FOF: Total number of FOF groups with at least 32 particles: 1667343 FOF: Largest FOF group has 160 particles. FOF: Total number of particles in FOF groups: 133997403 FOF: group properties are now allocated.. (presently allocated=177.624 MB) FOF: computation of group properties took = 0.0115293 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.108593 sec FOF: Finished computing FoF groups. Complete work took 0.969441 sec (presently allocated=172.565 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=182.905 MB) GRAVTREE: Tree construction done. took 0.303214 sec =113065 NTopnodes=18193 NTopleaves=15919 tree-build-scalability=0.839465 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133863103 particles. (took 0.816798 sec) SUBFIND: ngb iteration 2: need to repeat for 133634284 particles. (took 0.708866 sec) SUBFIND: ngb iteration 3: need to repeat for 133231345 particles. (took 0.656187 sec) SUBFIND: ngb iteration 4: need to repeat for 132471070 particles. (took 0.628287 sec) SUBFIND: ngb iteration 5: need to repeat for 131013557 particles. (took 0.61553 sec) SUBFIND: ngb iteration 6: need to repeat for 128122624 particles. (took 0.618994 sec) SUBFIND: ngb iteration 7: need to repeat for 122456155 particles. (took 0.621366 sec) SUBFIND: ngb iteration 8: need to repeat for 112176902 particles. (took 0.603426 sec) SUBFIND: ngb iteration 9: need to repeat for 97296597 particles. (took 0.563657 sec) SUBFIND: ngb iteration 10: need to repeat for 82774054 particles. (took 0.486593 sec) SUBFIND: ngb iteration 11: need to repeat for 72966807 particles. (took 0.401593 sec) SUBFIND: ngb iteration 12: need to repeat for 67590466 particles. (took 0.346646 sec) SUBFIND: ngb iteration 13: need to repeat for 64905258 particles. (took 0.323045 sec) SUBFIND: ngb iteration 14: need to repeat for 63584188 particles. (took 0.311543 sec) SUBFIND: ngb iteration 15: need to repeat for 62900321 particles. (took 0.299208 sec) SUBFIND: ngb iteration 16: need to repeat for 62502505 particles. (took 0.283424 sec) SUBFIND: ngb iteration 17: need to repeat for 62244497 particles. (took 0.262711 sec) SUBFIND: ngb iteration 18: need to repeat for 62062546 particles. (took 0.241014 sec) SUBFIND: ngb iteration 19: need to repeat for 61923526 particles. (took 0.223255 sec) SUBFIND: ngb iteration 20: need to repeat for 61800304 particles. (took 0.212245 sec) SUBFIND: ngb iteration 21: need to repeat for 61669571 particles. (took 0.208824 sec) SUBFIND: ngb iteration 22: need to repeat for 61512887 particles. (took 0.208767 sec) SUBFIND: ngb iteration 23: need to repeat for 61310072 particles. (took 0.210654 sec) SUBFIND: ngb iteration 24: need to repeat for 61039564 particles. (took 0.214565 sec) SUBFIND: ngb iteration 25: need to repeat for 60669547 particles. (took 0.221098 sec) SUBFIND: ngb iteration 26: need to repeat for 60167301 particles. (took 0.228496 sec) SUBFIND: ngb iteration 27: need to repeat for 59479943 particles. (took 0.240456 sec) SUBFIND: ngb iteration 28: need to repeat for 58544160 particles. (took 0.257605 sec) SUBFIND: ngb iteration 29: need to repeat for 57282513 particles. (took 0.280038 sec) SUBFIND: ngb iteration 30: need to repeat for 55605008 particles. (took 0.305274 sec) SUBFIND: ngb iteration 31: need to repeat for 53403840 particles. (took 0.3301 sec) SUBFIND: ngb iteration 32: need to repeat for 50564362 particles. (took 0.35259 sec) SUBFIND: ngb iteration 33: need to repeat for 46987577 particles. (took 0.3606 sec) SUBFIND: ngb iteration 34: need to repeat for 42591678 particles. (took 0.364661 sec) SUBFIND: ngb iteration 35: need to repeat for 37369332 particles. (took 0.350898 sec) SUBFIND: ngb iteration 36: need to repeat for 31434599 particles. (took 0.320197 sec) SUBFIND: ngb iteration 37: need to repeat for 25077365 particles. (took 0.278905 sec) SUBFIND: ngb iteration 38: need to repeat for 18706979 particles. (took 0.23648 sec) SUBFIND: ngb iteration 39: need to repeat for 12837257 particles. (took 0.191412 sec) SUBFIND: ngb iteration 40: need to repeat for 7950117 particles. (took 0.142457 sec) SUBFIND: ngb iteration 41: need to repeat for 4332833 particles. (took 0.0974262 sec) SUBFIND: ngb iteration 42: need to repeat for 2014766 particles. (took 0.0598865 sec) SUBFIND: ngb iteration 43: need to repeat for 778527 particles. (took 0.0317619 sec) SUBFIND: ngb iteration 44: need to repeat for 236786 particles. (took 0.0148536 sec) SUBFIND: ngb iteration 45: need to repeat for 53414 particles. (took 0.00596434 sec) SUBFIND: ngb iteration 46: need to repeat for 9186 particles. (took 0.00222425 sec) SUBFIND: ngb iteration 47: need to repeat for 1188 particles. (took 0.000768015 sec) SUBFIND: ngb iteration 48: need to repeat for 71 particles. (took 0.000323782 sec) SUBFIND: ngb iteration 49: need to repeat for 3 particles. (took 0.000186265 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 14.7505 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997403 particles, for threshold size factor 0.6) SUBFIND: The other 1667343 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00485763 sec SUBFIND: particle balance=1.11907 SUBFIND: subfind_exchange() took 0.451775 sec SUBFIND: particle balance for processing=1.00036 SUBFIND: subdomain decomposition took 0.104572 sec SUBFIND: serial subfind subdomain decomposition took 0.102921 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3860 took 91.4314 sec SUBFIND: root-task=0: Serial processing of halo 0 took 91.685 SUBFIND: Processing overall took (total time=92.5242 sec) SUBFIND: 0 out of 8022 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 239606 SUBFIND: subfind_exchange() (for return to original CPU) took 0.513067 sec TREE: Full tree construction for all particles. (presently allocated=159.79 MB) GRAVTREE: Tree construction done. took 1.48072 sec =113065 NTopnodes=18193 NTopleaves=15919 tree-build-scalability=0.839465 SUBFIND: SO iteration 1: need to repeat for 1667322 halo centers. (took 0.0287053 sec) SUBFIND: SO iteration 2: need to repeat for 1667322 halo centers. (took 0.0243936 sec) SUBFIND: SO iteration 3: need to repeat for 1667322 halo centers. (took 0.0241153 sec) SUBFIND: SO iteration 4: need to repeat for 1667322 halo centers. (took 0.0244469 sec) SUBFIND: SO iteration 5: need to repeat for 1667322 halo centers. (took 0.0248417 sec) SUBFIND: SO iteration 6: need to repeat for 1667322 halo centers. (took 0.0244978 sec) SUBFIND: SO iteration 7: need to repeat for 1667322 halo centers. (took 0.0242259 sec) SUBFIND: SO iteration 8: need to repeat for 1667322 halo centers. (took 0.0247528 sec) SUBFIND: SO iteration 9: need to repeat for 1667322 halo centers. (took 0.0259019 sec) SUBFIND: SO iteration 10: need to repeat for 1667322 halo centers. (took 0.0285459 sec) SUBFIND: SO iteration 11: need to repeat for 1667322 halo centers. (took 0.023614 sec) SUBFIND: SO iteration 12: need to repeat for 1667322 halo centers. (took 0.0237306 sec) SUBFIND: SO iteration 13: need to repeat for 1667322 halo centers. (took 0.0265691 sec) SUBFIND: SO iteration 14: need to repeat for 1667322 halo centers. (took 0.0254771 sec) SUBFIND: SO iteration 15: need to repeat for 1667322 halo centers. (took 0.027623 sec) SUBFIND: SO iteration 16: need to repeat for 105839 halo centers. (took 0.0229427 sec) SUBFIND: SO iteration 17: need to repeat for 1449 halo centers. (took 0.00712581 sec) SUBFIND: SO iteration 18: need to repeat for 6 halo centers. (took 0.000501132 sec) SUBFIND: SO iteration 1: need to repeat for 1667322 halo centers. (took 0.0276147 sec) SUBFIND: SO iteration 2: need to repeat for 1667322 halo centers. (took 0.0233583 sec) SUBFIND: SO iteration 3: need to repeat for 1667322 halo centers. (took 0.0250288 sec) SUBFIND: SO iteration 4: need to repeat for 1667322 halo centers. (took 0.0267145 sec) SUBFIND: SO iteration 5: need to repeat for 1667322 halo centers. (took 0.0255121 sec) SUBFIND: SO iteration 6: need to repeat for 1667322 halo centers. (took 0.0238563 sec) SUBFIND: SO iteration 7: need to repeat for 1667322 halo centers. (took 0.0264511 sec) SUBFIND: SO iteration 8: need to repeat for 1667322 halo centers. (took 0.0281078 sec) SUBFIND: SO iteration 9: need to repeat for 1667322 halo centers. (took 0.0286567 sec) SUBFIND: SO iteration 10: need to repeat for 1667322 halo centers. (took 0.0371151 sec) SUBFIND: SO iteration 11: need to repeat for 1667322 halo centers. (took 0.0299439 sec) SUBFIND: SO iteration 12: need to repeat for 1667322 halo centers. (took 0.023739 sec) SUBFIND: SO iteration 13: need to repeat for 1667322 halo centers. (took 0.0264192 sec) SUBFIND: SO iteration 14: need to repeat for 1667322 halo centers. (took 0.0289992 sec) SUBFIND: SO iteration 15: need to repeat for 1667322 halo centers. (took 0.0234042 sec) SUBFIND: SO iteration 16: need to repeat for 60315 halo centers. (took 0.0233291 sec) SUBFIND: SO iteration 17: need to repeat for 475 halo centers. (took 0.00508357 sec) SUBFIND: SO iteration 1: need to repeat for 1667322 halo centers. (took 0.0235889 sec) SUBFIND: SO iteration 2: need to repeat for 1667322 halo centers. (took 0.0239995 sec) SUBFIND: SO iteration 3: need to repeat for 1667322 halo centers. (took 0.0237965 sec) SUBFIND: SO iteration 4: need to repeat for 1667322 halo centers. (took 0.0239637 sec) SUBFIND: SO iteration 5: need to repeat for 1667322 halo centers. (took 0.0233416 sec) SUBFIND: SO iteration 6: need to repeat for 1667322 halo centers. (took 0.0234704 sec) SUBFIND: SO iteration 7: need to repeat for 1667322 halo centers. (took 0.0236513 sec) SUBFIND: SO iteration 8: need to repeat for 1667322 halo centers. (took 0.0239879 sec) SUBFIND: SO iteration 9: need to repeat for 1667322 halo centers. (took 0.0234147 sec) SUBFIND: SO iteration 10: need to repeat for 1667322 halo centers. (took 0.0234389 sec) SUBFIND: SO iteration 11: need to repeat for 1667322 halo centers. (took 0.0234164 sec) SUBFIND: SO iteration 12: need to repeat for 1667322 halo centers. (took 0.0233505 sec) SUBFIND: SO iteration 13: need to repeat for 1667322 halo centers. (took 0.0234886 sec) SUBFIND: SO iteration 14: need to repeat for 1667322 halo centers. (took 0.0233557 sec) SUBFIND: SO iteration 15: need to repeat for 1667322 halo centers. (took 0.0234736 sec) SUBFIND: SO iteration 16: need to repeat for 107679 halo centers. (took 0.0228032 sec) SUBFIND: SO iteration 17: need to repeat for 1476 halo centers. (took 0.00544734 sec) SUBFIND: SO iteration 18: need to repeat for 6 halo centers. (took 0.000332223 sec) SUBFIND: SO iteration 1: need to repeat for 1667322 halo centers. (took 0.0238864 sec) SUBFIND: SO iteration 2: need to repeat for 1667322 halo centers. (took 0.0243546 sec) SUBFIND: SO iteration 3: need to repeat for 1667322 halo centers. (took 0.022631 sec) SUBFIND: SO iteration 4: need to repeat for 1667322 halo centers. (took 0.0230075 sec) SUBFIND: SO iteration 5: need to repeat for 1667322 halo centers. (took 0.022996 sec) SUBFIND: SO iteration 6: need to repeat for 1667322 halo centers. (took 0.0232296 sec) SUBFIND: SO iteration 7: need to repeat for 1667322 halo centers. (took 0.0231002 sec) SUBFIND: SO iteration 8: need to repeat for 1667322 halo centers. (took 0.0230259 sec) SUBFIND: SO iteration 9: need to repeat for 1667322 halo centers. (took 0.0230051 sec) SUBFIND: SO iteration 10: need to repeat for 1667322 halo centers. (took 0.0230068 sec) SUBFIND: SO iteration 11: need to repeat for 1667322 halo centers. (took 0.0229251 sec) SUBFIND: SO iteration 12: need to repeat for 1667322 halo centers. (took 0.0229925 sec) SUBFIND: SO iteration 13: need to repeat for 1667322 halo centers. (took 0.0230083 sec) SUBFIND: SO iteration 14: need to repeat for 1667322 halo centers. (took 0.0230643 sec) SUBFIND: SO iteration 15: need to repeat for 1667322 halo centers. (took 0.022901 sec) SUBFIND: SO iteration 16: need to repeat for 1329721 halo centers. (took 0.0229235 sec) SUBFIND: SO iteration 17: need to repeat for 103860 halo centers. (took 0.0189173 sec) SUBFIND: SO iteration 18: need to repeat for 10963 halo centers. (took 0.00530289 sec) SUBFIND: SO iteration 19: need to repeat for 2 halo centers. (took 0.0013602 sec) SUBFIND: determining spherical overdensity masses took 1.62858 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0957242 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.62736 sec, total size 624.957 MB, corresponds to effective I/O rate of 384.031 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.6287 sec SUBFIND: Finished with SUBFIND. (total time=113.459 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1675289 SUBFIND: Largest subhalo has 160 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133995254 FOF: preparing output order of particles took 1.47701 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.78797 sec, total size 5311.18 MB, corresponds to effective I/O rate of 681.972 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 188 (rank 188 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 193 (rank 193 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 175 (rank 175 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 178 (rank 178 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.