TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186488.27 Mb (on task= 108), Smallest = 186397.11 Mb (on task= 0), Average = 186445.81 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5118.22 Mb (on task= 0), Smallest = 5027.06 Mb (on task= 108), Average = 5069.51 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5118.22 Mb (on task= 0), Smallest = 5027.06 Mb (on task= 108), Average = 5069.51 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 297), Smallest = 95321.41 Mb (on task= 87), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.5277 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 62527832 (tot= 62527832) masstab= 0 READIC: Type 1: 71464764 (tot= 71464764) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 4917 (tot= 4917) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.13303 sec, total size 6372.44 MB, corresponds to effective I/O rate of 1541.83 MB/sec READIC: Total number of particles : 133997513 INIT: Testing ID uniqueness... INIT: success. took=0.071928 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=16024, determination of top-level tree involved 5 iterations and took 0.624414 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11958|1.11973 DOMAIN: combining multiple-domains took 0.013371 sec DOMAIN: exchange of 71469681 particles DOMAIN: particle exchange done. (took 0.390453 sec) DOMAIN: domain decomposition done. (took in total 1.03868 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0723541 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=171.444 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0891954 sec =81476.1 NTopnodes=18313 NTopleaves=16024 FOF: Start linking particles (presently allocated=195.145 MB) FOF: linking of small cells took 0.00185888 sec FOF: local links done (took 0.154579 sec, avg-work=0.1365, imbalance=1.12601). FOF: Marked=148522 out of the 71464764 primaries which are linked FOF: begin linking across processors (presently allocated=197.008 MB) FOF: have done 12269 cross links (processed 148522, took 0.00630279 sec) FOF: have done 2594 cross links (processed 70853, took 0.00535941 sec) FOF: have done 451 cross links (processed 10356, took 0.00476957 sec) FOF: have done 77 cross links (processed 1768, took 0.00457848 sec) FOF: have done 13 cross links (processed 303, took 0.00447306 sec) FOF: have done 4 cross links (processed 39, took 0.00444838 sec) FOF: have done 2 cross links (processed 19, took 0.00439243 sec) FOF: have done 0 cross links (processed 12, took 0.00449841 sec) FOF: Local groups found. FOF: primary group finding took = 0.205748 sec FOF: Start finding nearest dm-particle (presently allocated=195.145 MB) FOF: fof-nearest iteration 1: need to repeat for 61158526 particles. (took = 0.0925809 sec) FOF: fof-nearest iteration 2: need to repeat for 54655400 particles. (took = 0.102259 sec) FOF: fof-nearest iteration 3: need to repeat for 37362925 particles. (took = 0.111314 sec) FOF: fof-nearest iteration 4: need to repeat for 15366099 particles. (took = 0.0936476 sec) FOF: fof-nearest iteration 5: need to repeat for 2445653 particles. (took = 0.048918 sec) FOF: fof-nearest iteration 6: need to repeat for 65749 particles. (took = 0.0125703 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.469681 sec FOF: compiling local group data and catalogue took = 0.0268723 sec FOF: Total number of FOF groups with at least 32 particles: 1565489 FOF: Largest FOF group has 171 particles. FOF: Total number of particles in FOF groups: 133997513 FOF: group properties are now allocated.. (presently allocated=177.761 MB) FOF: computation of group properties took = 0.0111509 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.10908 sec FOF: Finished computing FoF groups. Complete work took 0.973965 sec (presently allocated=172.777 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=183.122 MB) GRAVTREE: Tree construction done. took 0.305894 sec =111457 NTopnodes=18313 NTopleaves=16024 tree-build-scalability=0.836075 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133882740 particles. (took 0.812052 sec) SUBFIND: ngb iteration 2: need to repeat for 133675936 particles. (took 0.710731 sec) SUBFIND: ngb iteration 3: need to repeat for 133291681 particles. (took 0.671733 sec) SUBFIND: ngb iteration 4: need to repeat for 132554206 particles. (took 0.639162 sec) SUBFIND: ngb iteration 5: need to repeat for 131111614 particles. (took 0.631563 sec) SUBFIND: ngb iteration 6: need to repeat for 128233145 particles. (took 0.631613 sec) SUBFIND: ngb iteration 7: need to repeat for 122571006 particles. (took 0.637898 sec) SUBFIND: ngb iteration 8: need to repeat for 112277970 particles. (took 0.624221 sec) SUBFIND: ngb iteration 9: need to repeat for 97357637 particles. (took 0.576047 sec) SUBFIND: ngb iteration 10: need to repeat for 82894349 particles. (took 0.496674 sec) SUBFIND: ngb iteration 11: need to repeat for 73186807 particles. (took 0.411968 sec) SUBFIND: ngb iteration 12: need to repeat for 67898143 particles. (took 0.357882 sec) SUBFIND: ngb iteration 13: need to repeat for 65274765 particles. (took 0.33141 sec) SUBFIND: ngb iteration 14: need to repeat for 63992060 particles. (took 0.321004 sec) SUBFIND: ngb iteration 15: need to repeat for 63315696 particles. (took 0.309721 sec) SUBFIND: ngb iteration 16: need to repeat for 62921439 particles. (took 0.292554 sec) SUBFIND: ngb iteration 17: need to repeat for 62666516 particles. (took 0.271548 sec) SUBFIND: ngb iteration 18: need to repeat for 62488410 particles. (took 0.249535 sec) SUBFIND: ngb iteration 19: need to repeat for 62350896 particles. (took 0.231265 sec) SUBFIND: ngb iteration 20: need to repeat for 62230189 particles. (took 0.219851 sec) SUBFIND: ngb iteration 21: need to repeat for 62105736 particles. (took 0.215449 sec) SUBFIND: ngb iteration 22: need to repeat for 61956263 particles. (took 0.215726 sec) SUBFIND: ngb iteration 23: need to repeat for 61760983 particles. (took 0.218184 sec) SUBFIND: ngb iteration 24: need to repeat for 61498469 particles. (took 0.221628 sec) SUBFIND: ngb iteration 25: need to repeat for 61143450 particles. (took 0.227516 sec) SUBFIND: ngb iteration 26: need to repeat for 60663488 particles. (took 0.23517 sec) SUBFIND: ngb iteration 27: need to repeat for 60010553 particles. (took 0.24809 sec) SUBFIND: ngb iteration 28: need to repeat for 59124447 particles. (took 0.266382 sec) SUBFIND: ngb iteration 29: need to repeat for 57931435 particles. (took 0.287105 sec) SUBFIND: ngb iteration 30: need to repeat for 56328925 particles. (took 0.31577 sec) SUBFIND: ngb iteration 31: need to repeat for 54221970 particles. (took 0.342042 sec) SUBFIND: ngb iteration 32: need to repeat for 51473020 particles. (took 0.364283 sec) SUBFIND: ngb iteration 33: need to repeat for 47978495 particles. (took 0.383633 sec) SUBFIND: ngb iteration 34: need to repeat for 43662921 particles. (took 0.382626 sec) SUBFIND: ngb iteration 35: need to repeat for 38516284 particles. (took 0.368183 sec) SUBFIND: ngb iteration 36: need to repeat for 32619335 particles. (took 0.336378 sec) SUBFIND: ngb iteration 37: need to repeat for 26232763 particles. (took 0.296314 sec) SUBFIND: ngb iteration 38: need to repeat for 19746697 particles. (took 0.252728 sec) SUBFIND: ngb iteration 39: need to repeat for 13702831 particles. (took 0.203806 sec) SUBFIND: ngb iteration 40: need to repeat for 8591244 particles. (took 0.152238 sec) SUBFIND: ngb iteration 41: need to repeat for 4759047 particles. (took 0.106737 sec) SUBFIND: ngb iteration 42: need to repeat for 2259351 particles. (took 0.0670031 sec) SUBFIND: ngb iteration 43: need to repeat for 898457 particles. (took 0.0367509 sec) SUBFIND: ngb iteration 44: need to repeat for 285958 particles. (took 0.017945 sec) SUBFIND: ngb iteration 45: need to repeat for 69662 particles. (took 0.00750893 sec) SUBFIND: ngb iteration 46: need to repeat for 12268 particles. (took 0.00270316 sec) SUBFIND: ngb iteration 47: need to repeat for 1489 particles. (took 0.000981009 sec) SUBFIND: ngb iteration 48: need to repeat for 165 particles. (took 0.000344062 sec) SUBFIND: ngb iteration 49: need to repeat for 8 particles. (took 0.000218604 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 15.2103 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997513 particles, for threshold size factor 0.6) SUBFIND: The other 1565489 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00450861 sec SUBFIND: particle balance=1.11956 SUBFIND: subfind_exchange() took 0.458191 sec SUBFIND: particle balance for processing=1.00032 SUBFIND: subdomain decomposition took 0.104638 sec SUBFIND: serial subfind subdomain decomposition took 0.103508 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3624 took 85.1666 sec SUBFIND: root-task=0: Serial processing of halo 0 took 85.4212 SUBFIND: Processing overall took (total time=86.8484 sec) SUBFIND: 0 out of 9274 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 241235 SUBFIND: subfind_exchange() (for return to original CPU) took 0.509682 sec TREE: Full tree construction for all particles. (presently allocated=159.544 MB) GRAVTREE: Tree construction done. took 1.49786 sec =111457 NTopnodes=18313 NTopleaves=16024 tree-build-scalability=0.836075 SUBFIND: SO iteration 1: need to repeat for 1565465 halo centers. (took 0.0274228 sec) SUBFIND: SO iteration 2: need to repeat for 1565465 halo centers. (took 0.0228037 sec) SUBFIND: SO iteration 3: need to repeat for 1565465 halo centers. (took 0.0233783 sec) SUBFIND: SO iteration 4: need to repeat for 1565465 halo centers. (took 0.0229512 sec) SUBFIND: SO iteration 5: need to repeat for 1565465 halo centers. (took 0.0230863 sec) SUBFIND: SO iteration 6: need to repeat for 1565465 halo centers. (took 0.0231025 sec) SUBFIND: SO iteration 7: need to repeat for 1565465 halo centers. (took 0.0230157 sec) SUBFIND: SO iteration 8: need to repeat for 1565465 halo centers. (took 0.0259913 sec) SUBFIND: SO iteration 9: need to repeat for 1565465 halo centers. (took 0.023283 sec) SUBFIND: SO iteration 10: need to repeat for 1565465 halo centers. (took 0.0230096 sec) SUBFIND: SO iteration 11: need to repeat for 1565465 halo centers. (took 0.0230236 sec) SUBFIND: SO iteration 12: need to repeat for 1565465 halo centers. (took 0.0230954 sec) SUBFIND: SO iteration 13: need to repeat for 1565465 halo centers. (took 0.0227013 sec) SUBFIND: SO iteration 14: need to repeat for 1565465 halo centers. (took 0.0226356 sec) SUBFIND: SO iteration 15: need to repeat for 1565465 halo centers. (took 0.0228428 sec) SUBFIND: SO iteration 16: need to repeat for 90895 halo centers. (took 0.0220709 sec) SUBFIND: SO iteration 17: need to repeat for 1125 halo centers. (took 0.00513138 sec) SUBFIND: SO iteration 18: need to repeat for 8 halo centers. (took 0.000305174 sec) SUBFIND: SO iteration 1: need to repeat for 1565465 halo centers. (took 0.0227951 sec) SUBFIND: SO iteration 2: need to repeat for 1565465 halo centers. (took 0.0222332 sec) SUBFIND: SO iteration 3: need to repeat for 1565465 halo centers. (took 0.0225816 sec) SUBFIND: SO iteration 4: need to repeat for 1565465 halo centers. (took 0.0226102 sec) SUBFIND: SO iteration 5: need to repeat for 1565465 halo centers. (took 0.0226666 sec) SUBFIND: SO iteration 6: need to repeat for 1565465 halo centers. (took 0.0225173 sec) SUBFIND: SO iteration 7: need to repeat for 1565465 halo centers. (took 0.0226646 sec) SUBFIND: SO iteration 8: need to repeat for 1565465 halo centers. (took 0.022634 sec) SUBFIND: SO iteration 9: need to repeat for 1565465 halo centers. (took 0.0225889 sec) SUBFIND: SO iteration 10: need to repeat for 1565465 halo centers. (took 0.0226682 sec) SUBFIND: SO iteration 11: need to repeat for 1565465 halo centers. (took 0.0225406 sec) SUBFIND: SO iteration 12: need to repeat for 1565465 halo centers. (took 0.0225931 sec) SUBFIND: SO iteration 13: need to repeat for 1565465 halo centers. (took 0.0225543 sec) SUBFIND: SO iteration 14: need to repeat for 1565465 halo centers. (took 0.0225655 sec) SUBFIND: SO iteration 15: need to repeat for 1565465 halo centers. (took 0.0225771 sec) SUBFIND: SO iteration 16: need to repeat for 51515 halo centers. (took 0.0220149 sec) SUBFIND: SO iteration 17: need to repeat for 442 halo centers. (took 0.00402622 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.00021187 sec) SUBFIND: SO iteration 1: need to repeat for 1565465 halo centers. (took 0.0227783 sec) SUBFIND: SO iteration 2: need to repeat for 1565465 halo centers. (took 0.0224847 sec) SUBFIND: SO iteration 3: need to repeat for 1565465 halo centers. (took 0.0229385 sec) SUBFIND: SO iteration 4: need to repeat for 1565465 halo centers. (took 0.0226415 sec) SUBFIND: SO iteration 5: need to repeat for 1565465 halo centers. (took 0.0229312 sec) SUBFIND: SO iteration 6: need to repeat for 1565465 halo centers. (took 0.0225714 sec) SUBFIND: SO iteration 7: need to repeat for 1565465 halo centers. (took 0.0227196 sec) SUBFIND: SO iteration 8: need to repeat for 1565465 halo centers. (took 0.0225269 sec) SUBFIND: SO iteration 9: need to repeat for 1565465 halo centers. (took 0.0225844 sec) SUBFIND: SO iteration 10: need to repeat for 1565465 halo centers. (took 0.0226088 sec) SUBFIND: SO iteration 11: need to repeat for 1565465 halo centers. (took 0.0226087 sec) SUBFIND: SO iteration 12: need to repeat for 1565465 halo centers. (took 0.0237144 sec) SUBFIND: SO iteration 13: need to repeat for 1565465 halo centers. (took 0.0226323 sec) SUBFIND: SO iteration 14: need to repeat for 1565465 halo centers. (took 0.0225809 sec) SUBFIND: SO iteration 15: need to repeat for 1565465 halo centers. (took 0.0231556 sec) SUBFIND: SO iteration 16: need to repeat for 92932 halo centers. (took 0.0220903 sec) SUBFIND: SO iteration 17: need to repeat for 1192 halo centers. (took 0.00520588 sec) SUBFIND: SO iteration 18: need to repeat for 8 halo centers. (took 0.000318877 sec) SUBFIND: SO iteration 1: need to repeat for 1565465 halo centers. (took 0.0227319 sec) SUBFIND: SO iteration 2: need to repeat for 1565465 halo centers. (took 0.0226482 sec) SUBFIND: SO iteration 3: need to repeat for 1565465 halo centers. (took 0.0220201 sec) SUBFIND: SO iteration 4: need to repeat for 1565465 halo centers. (took 0.0224215 sec) SUBFIND: SO iteration 5: need to repeat for 1565465 halo centers. (took 0.0223746 sec) SUBFIND: SO iteration 6: need to repeat for 1565465 halo centers. (took 0.0223617 sec) SUBFIND: SO iteration 7: need to repeat for 1565465 halo centers. (took 0.0222918 sec) SUBFIND: SO iteration 8: need to repeat for 1565465 halo centers. (took 0.0223054 sec) SUBFIND: SO iteration 9: need to repeat for 1565465 halo centers. (took 0.0223095 sec) SUBFIND: SO iteration 10: need to repeat for 1565465 halo centers. (took 0.0243553 sec) SUBFIND: SO iteration 11: need to repeat for 1565465 halo centers. (took 0.0223205 sec) SUBFIND: SO iteration 12: need to repeat for 1565465 halo centers. (took 0.0223927 sec) SUBFIND: SO iteration 13: need to repeat for 1565465 halo centers. (took 0.0223079 sec) SUBFIND: SO iteration 14: need to repeat for 1565465 halo centers. (took 0.0233532 sec) SUBFIND: SO iteration 15: need to repeat for 1565465 halo centers. (took 0.0226583 sec) SUBFIND: SO iteration 16: need to repeat for 1212674 halo centers. (took 0.0222312 sec) SUBFIND: SO iteration 17: need to repeat for 89582 halo centers. (took 0.017934 sec) SUBFIND: SO iteration 18: need to repeat for 7645 halo centers. (took 0.00581473 sec) SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.00128186 sec) SUBFIND: determining spherical overdensity masses took 1.505 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0964525 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.58857 sec, total size 587.135 MB, corresponds to effective I/O rate of 369.601 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.5899 sec SUBFIND: Finished with SUBFIND. (total time=108.104 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1574676 SUBFIND: Largest subhalo has 118 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133994628 FOF: preparing output order of particles took 1.47772 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.43946 sec, total size 5316.01 MB, corresponds to effective I/O rate of 714.57 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 186 (rank 186 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 42 (rank 42 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 48 (rank 48 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.