TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186495.12 Mb (on task= 108), Smallest = 186392.98 Mb (on task= 0), Average = 186446.24 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5122.35 Mb (on task= 0), Smallest = 5020.21 Mb (on task= 108), Average = 5069.09 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5122.35 Mb (on task= 0), Smallest = 5020.21 Mb (on task= 108), Average = 5069.09 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 297), Smallest = 95321.40 Mb (on task= 92), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.8465 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 62828973 (tot= 62828973) masstab= 0 READIC: Type 1: 71162382 (tot= 71162382) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 6145 (tot= 6145) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.09517 sec, total size 6373.59 MB, corresponds to effective I/O rate of 1556.37 MB/sec READIC: Total number of particles : 133997500 INIT: Testing ID uniqueness... INIT: success. took=0.0752617 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=16871, determination of top-level tree involved 5 iterations and took 0.634403 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11967|1.11973 DOMAIN: combining multiple-domains took 0.0133591 sec DOMAIN: exchange of 71168527 particles DOMAIN: particle exchange done. (took 0.379564 sec) DOMAIN: domain decomposition done. (took in total 1.03786 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.073406 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=171.683 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.089471 sec =81174.4 NTopnodes=19281 NTopleaves=16871 FOF: Start linking particles (presently allocated=195.529 MB) FOF: linking of small cells took 0.00201111 sec FOF: local links done (took 0.155911 sec, avg-work=0.136811, imbalance=1.13633). FOF: Marked=149246 out of the 71162382 primaries which are linked FOF: begin linking across processors (presently allocated=197.416 MB) FOF: have done 12087 cross links (processed 149246, took 0.00628799 sec) FOF: have done 2542 cross links (processed 71213, took 0.00534638 sec) FOF: have done 441 cross links (processed 9754, took 0.00473594 sec) FOF: have done 79 cross links (processed 1780, took 0.00449925 sec) FOF: have done 17 cross links (processed 324, took 0.00443124 sec) FOF: have done 3 cross links (processed 52, took 0.00437384 sec) FOF: have done 0 cross links (processed 5, took 0.00439701 sec) FOF: Local groups found. FOF: primary group finding took = 0.202499 sec FOF: Start finding nearest dm-particle (presently allocated=195.529 MB) FOF: fof-nearest iteration 1: need to repeat for 61390134 particles. (took = 0.0940496 sec) FOF: fof-nearest iteration 2: need to repeat for 54587849 particles. (took = 0.104013 sec) FOF: fof-nearest iteration 3: need to repeat for 36803411 particles. (took = 0.112286 sec) FOF: fof-nearest iteration 4: need to repeat for 14852674 particles. (took = 0.093127 sec) FOF: fof-nearest iteration 5: need to repeat for 2331461 particles. (took = 0.0477806 sec) FOF: fof-nearest iteration 6: need to repeat for 63344 particles. (took = 0.0123262 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.472017 sec FOF: compiling local group data and catalogue took = 0.0267659 sec FOF: Total number of FOF groups with at least 32 particles: 1492682 FOF: Largest FOF group has 179 particles. FOF: Total number of particles in FOF groups: 133997500 FOF: group properties are now allocated.. (presently allocated=178.021 MB) FOF: computation of group properties took = 0.0110382 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.101497 sec FOF: Finished computing FoF groups. Complete work took 0.963238 sec (presently allocated=172.969 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=183.315 MB) GRAVTREE: Tree construction done. took 0.163841 sec =111136 NTopnodes=19281 NTopleaves=16871 tree-build-scalability=0.826911 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133875389 particles. (took 0.841213 sec) SUBFIND: ngb iteration 2: need to repeat for 133660113 particles. (took 0.735533 sec) SUBFIND: ngb iteration 3: need to repeat for 133268335 particles. (took 0.696271 sec) SUBFIND: ngb iteration 4: need to repeat for 132510041 particles. (took 0.666191 sec) SUBFIND: ngb iteration 5: need to repeat for 131005262 particles. (took 0.645753 sec) SUBFIND: ngb iteration 6: need to repeat for 128026279 particles. (took 0.647141 sec) SUBFIND: ngb iteration 7: need to repeat for 122166945 particles. (took 0.647373 sec) SUBFIND: ngb iteration 8: need to repeat for 111580124 particles. (took 0.63095 sec) SUBFIND: ngb iteration 9: need to repeat for 96584750 particles. (took 0.585015 sec) SUBFIND: ngb iteration 10: need to repeat for 82421221 particles. (took 0.503349 sec) SUBFIND: ngb iteration 11: need to repeat for 73045830 particles. (took 0.419064 sec) SUBFIND: ngb iteration 12: need to repeat for 67972267 particles. (took 0.365995 sec) SUBFIND: ngb iteration 13: need to repeat for 65470601 particles. (took 0.34172 sec) SUBFIND: ngb iteration 14: need to repeat for 64244182 particles. (took 0.331236 sec) SUBFIND: ngb iteration 15: need to repeat for 63595579 particles. (took 0.320215 sec) SUBFIND: ngb iteration 16: need to repeat for 63213474 particles. (took 0.303803 sec) SUBFIND: ngb iteration 17: need to repeat for 62962463 particles. (took 0.283791 sec) SUBFIND: ngb iteration 18: need to repeat for 62783055 particles. (took 0.262025 sec) SUBFIND: ngb iteration 19: need to repeat for 62643769 particles. (took 0.244598 sec) SUBFIND: ngb iteration 20: need to repeat for 62522331 particles. (took 0.232874 sec) SUBFIND: ngb iteration 21: need to repeat for 62395424 particles. (took 0.228564 sec) SUBFIND: ngb iteration 22: need to repeat for 62246331 particles. (took 0.228677 sec) SUBFIND: ngb iteration 23: need to repeat for 62054674 particles. (took 0.230828 sec) SUBFIND: ngb iteration 24: need to repeat for 61799020 particles. (took 0.233908 sec) SUBFIND: ngb iteration 25: need to repeat for 61455952 particles. (took 0.238934 sec) SUBFIND: ngb iteration 26: need to repeat for 60991964 particles. (took 0.245739 sec) SUBFIND: ngb iteration 27: need to repeat for 60360866 particles. (took 0.2581 sec) SUBFIND: ngb iteration 28: need to repeat for 59501679 particles. (took 0.273282 sec) SUBFIND: ngb iteration 29: need to repeat for 58333281 particles. (took 0.29737 sec) SUBFIND: ngb iteration 30: need to repeat for 56767847 particles. (took 0.326553 sec) SUBFIND: ngb iteration 31: need to repeat for 54693583 particles. (took 0.350848 sec) SUBFIND: ngb iteration 32: need to repeat for 51992625 particles. (took 0.378765 sec) SUBFIND: ngb iteration 33: need to repeat for 48540876 particles. (took 0.386722 sec) SUBFIND: ngb iteration 34: need to repeat for 44243955 particles. (took 0.390274 sec) SUBFIND: ngb iteration 35: need to repeat for 39091400 particles. (took 0.379663 sec) SUBFIND: ngb iteration 36: need to repeat for 33171559 particles. (took 0.348788 sec) SUBFIND: ngb iteration 37: need to repeat for 26722141 particles. (took 0.303045 sec) SUBFIND: ngb iteration 38: need to repeat for 20159735 particles. (took 0.258633 sec) SUBFIND: ngb iteration 39: need to repeat for 14013002 particles. (took 0.209553 sec) SUBFIND: ngb iteration 40: need to repeat for 8809195 particles. (took 0.159811 sec) SUBFIND: ngb iteration 41: need to repeat for 4894804 particles. (took 0.112144 sec) SUBFIND: ngb iteration 42: need to repeat for 2341436 particles. (took 0.070573 sec) SUBFIND: ngb iteration 43: need to repeat for 934516 particles. (took 0.0405955 sec) SUBFIND: ngb iteration 44: need to repeat for 300096 particles. (took 0.0206723 sec) SUBFIND: ngb iteration 45: need to repeat for 72627 particles. (took 0.00893922 sec) SUBFIND: ngb iteration 46: need to repeat for 12590 particles. (took 0.00296794 sec) SUBFIND: ngb iteration 47: need to repeat for 1420 particles. (took 0.000799546 sec) SUBFIND: ngb iteration 48: need to repeat for 101 particles. (took 0.000328856 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 15.698 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997500 particles, for threshold size factor 0.6) SUBFIND: The other 1492682 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00432383 sec SUBFIND: particle balance=1.11967 SUBFIND: subfind_exchange() took 0.453484 sec SUBFIND: particle balance for processing=1.00049 SUBFIND: subdomain decomposition took 0.104537 sec SUBFIND: serial subfind subdomain decomposition took 0.103159 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3456 took 81.4357 sec SUBFIND: root-task=0: Serial processing of halo 0 took 81.6897 SUBFIND: Processing overall took (total time=82.8768 sec) SUBFIND: 0 out of 10275 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 242396 SUBFIND: subfind_exchange() (for return to original CPU) took 0.510637 sec TREE: Full tree construction for all particles. (presently allocated=160.191 MB) GRAVTREE: Tree construction done. took 1.51437 sec =111136 NTopnodes=19281 NTopleaves=16871 tree-build-scalability=0.826911 SUBFIND: SO iteration 1: need to repeat for 1492663 halo centers. (took 0.026934 sec) SUBFIND: SO iteration 2: need to repeat for 1492663 halo centers. (took 0.0223367 sec) SUBFIND: SO iteration 3: need to repeat for 1492663 halo centers. (took 0.0227455 sec) SUBFIND: SO iteration 4: need to repeat for 1492663 halo centers. (took 0.0224177 sec) SUBFIND: SO iteration 5: need to repeat for 1492663 halo centers. (took 0.0222688 sec) SUBFIND: SO iteration 6: need to repeat for 1492663 halo centers. (took 0.0221959 sec) SUBFIND: SO iteration 7: need to repeat for 1492663 halo centers. (took 0.0221256 sec) SUBFIND: SO iteration 8: need to repeat for 1492663 halo centers. (took 0.0220857 sec) SUBFIND: SO iteration 9: need to repeat for 1492663 halo centers. (took 0.022085 sec) SUBFIND: SO iteration 10: need to repeat for 1492663 halo centers. (took 0.0224697 sec) SUBFIND: SO iteration 11: need to repeat for 1492663 halo centers. (took 0.0221366 sec) SUBFIND: SO iteration 12: need to repeat for 1492663 halo centers. (took 0.022096 sec) SUBFIND: SO iteration 13: need to repeat for 1492663 halo centers. (took 0.0223685 sec) SUBFIND: SO iteration 14: need to repeat for 1492663 halo centers. (took 0.0221053 sec) SUBFIND: SO iteration 15: need to repeat for 1492663 halo centers. (took 0.022143 sec) SUBFIND: SO iteration 16: need to repeat for 80602 halo centers. (took 0.0216147 sec) SUBFIND: SO iteration 17: need to repeat for 1080 halo centers. (took 0.00487894 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000301387 sec) SUBFIND: SO iteration 1: need to repeat for 1492663 halo centers. (took 0.0223112 sec) SUBFIND: SO iteration 2: need to repeat for 1492663 halo centers. (took 0.0215409 sec) SUBFIND: SO iteration 3: need to repeat for 1492663 halo centers. (took 0.0221695 sec) SUBFIND: SO iteration 4: need to repeat for 1492663 halo centers. (took 0.0220796 sec) SUBFIND: SO iteration 5: need to repeat for 1492663 halo centers. (took 0.0220118 sec) SUBFIND: SO iteration 6: need to repeat for 1492663 halo centers. (took 0.0226022 sec) SUBFIND: SO iteration 7: need to repeat for 1492663 halo centers. (took 0.0223747 sec) SUBFIND: SO iteration 8: need to repeat for 1492663 halo centers. (took 0.0245907 sec) SUBFIND: SO iteration 9: need to repeat for 1492663 halo centers. (took 0.0252558 sec) SUBFIND: SO iteration 10: need to repeat for 1492663 halo centers. (took 0.0241383 sec) SUBFIND: SO iteration 11: need to repeat for 1492663 halo centers. (took 0.0285024 sec) SUBFIND: SO iteration 12: need to repeat for 1492663 halo centers. (took 0.0253045 sec) SUBFIND: SO iteration 13: need to repeat for 1492663 halo centers. (took 0.0224794 sec) SUBFIND: SO iteration 14: need to repeat for 1492663 halo centers. (took 0.0220931 sec) SUBFIND: SO iteration 15: need to repeat for 1492663 halo centers. (took 0.0265614 sec) SUBFIND: SO iteration 16: need to repeat for 45525 halo centers. (took 0.0214796 sec) SUBFIND: SO iteration 17: need to repeat for 400 halo centers. (took 0.00364937 sec) SUBFIND: SO iteration 1: need to repeat for 1492663 halo centers. (took 0.0222805 sec) SUBFIND: SO iteration 2: need to repeat for 1492663 halo centers. (took 0.022088 sec) SUBFIND: SO iteration 3: need to repeat for 1492663 halo centers. (took 0.0225057 sec) SUBFIND: SO iteration 4: need to repeat for 1492663 halo centers. (took 0.0226256 sec) SUBFIND: SO iteration 5: need to repeat for 1492663 halo centers. (took 0.0221086 sec) SUBFIND: SO iteration 6: need to repeat for 1492663 halo centers. (took 0.0229911 sec) SUBFIND: SO iteration 7: need to repeat for 1492663 halo centers. (took 0.0221008 sec) SUBFIND: SO iteration 8: need to repeat for 1492663 halo centers. (took 0.0221226 sec) SUBFIND: SO iteration 9: need to repeat for 1492663 halo centers. (took 0.0221144 sec) SUBFIND: SO iteration 10: need to repeat for 1492663 halo centers. (took 0.0220356 sec) SUBFIND: SO iteration 11: need to repeat for 1492663 halo centers. (took 0.0224121 sec) SUBFIND: SO iteration 12: need to repeat for 1492663 halo centers. (took 0.0220993 sec) SUBFIND: SO iteration 13: need to repeat for 1492663 halo centers. (took 0.0220748 sec) SUBFIND: SO iteration 14: need to repeat for 1492663 halo centers. (took 0.0220857 sec) SUBFIND: SO iteration 15: need to repeat for 1492663 halo centers. (took 0.0220918 sec) SUBFIND: SO iteration 16: need to repeat for 82379 halo centers. (took 0.0271335 sec) SUBFIND: SO iteration 17: need to repeat for 1121 halo centers. (took 0.00936016 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000381034 sec) SUBFIND: SO iteration 1: need to repeat for 1492663 halo centers. (took 0.026134 sec) SUBFIND: SO iteration 2: need to repeat for 1492663 halo centers. (took 0.0276299 sec) SUBFIND: SO iteration 3: need to repeat for 1492663 halo centers. (took 0.0236752 sec) SUBFIND: SO iteration 4: need to repeat for 1492663 halo centers. (took 0.0219004 sec) SUBFIND: SO iteration 5: need to repeat for 1492663 halo centers. (took 0.0218914 sec) SUBFIND: SO iteration 6: need to repeat for 1492663 halo centers. (took 0.0218913 sec) SUBFIND: SO iteration 7: need to repeat for 1492663 halo centers. (took 0.0229762 sec) SUBFIND: SO iteration 8: need to repeat for 1492663 halo centers. (took 0.0232425 sec) SUBFIND: SO iteration 9: need to repeat for 1492663 halo centers. (took 0.0240096 sec) SUBFIND: SO iteration 10: need to repeat for 1492663 halo centers. (took 0.0227402 sec) SUBFIND: SO iteration 11: need to repeat for 1492663 halo centers. (took 0.0237572 sec) SUBFIND: SO iteration 12: need to repeat for 1492663 halo centers. (took 0.026134 sec) SUBFIND: SO iteration 13: need to repeat for 1492663 halo centers. (took 0.0276598 sec) SUBFIND: SO iteration 14: need to repeat for 1492663 halo centers. (took 0.0249533 sec) SUBFIND: SO iteration 15: need to repeat for 1492663 halo centers. (took 0.0247348 sec) SUBFIND: SO iteration 16: need to repeat for 1128129 halo centers. (took 0.0217933 sec) SUBFIND: SO iteration 17: need to repeat for 78206 halo centers. (took 0.0188044 sec) SUBFIND: SO iteration 18: need to repeat for 6235 halo centers. (took 0.00480092 sec) SUBFIND: SO iteration 19: need to repeat for 6 halo centers. (took 0.000825621 sec) SUBFIND: determining spherical overdensity masses took 1.52952 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0913834 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.51335 sec, total size 560.121 MB, corresponds to effective I/O rate of 370.119 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.51468 sec SUBFIND: Finished with SUBFIND. (total time=104.434 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1502856 SUBFIND: Largest subhalo has 179 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133995295 FOF: preparing output order of particles took 1.50522 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.32274 sec, total size 5319.46 MB, corresponds to effective I/O rate of 726.43 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 170 (rank 170 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 172 (rank 172 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 183 (rank 183 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.