TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186510.36 Mb (on task= 81), Smallest = 186416.21 Mb (on task= 0), Average = 186449.11 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5099.12 Mb (on task= 0), Smallest = 5004.84 Mb (on task= 81), Average = 5066.21 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5099.12 Mb (on task= 0), Smallest = 5004.84 Mb (on task= 81), Average = 5066.21 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 297), Smallest = 95321.41 Mb (on task= 103), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.3112 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 62948891 (tot= 62948891) masstab= 0 READIC: Type 1: 71041966 (tot= 71041966) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 6602 (tot= 6602) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.01435 sec, total size 6374.05 MB, corresponds to effective I/O rate of 1587.82 MB/sec READIC: Total number of particles : 133997459 INIT: Testing ID uniqueness... INIT: success. took=0.0737829 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=17172, determination of top-level tree involved 5 iterations and took 0.632388 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11958|1.11973 DOMAIN: combining multiple-domains took 0.0134184 sec DOMAIN: exchange of 71048568 particles DOMAIN: particle exchange done. (took 0.388703 sec) DOMAIN: domain decomposition done. (took in total 1.04516 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0731883 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=171.779 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0883262 sec =81051.5 NTopnodes=19625 NTopleaves=17172 FOF: Start linking particles (presently allocated=195.681 MB) FOF: linking of small cells took 0.00210717 sec FOF: local links done (took 0.155161 sec, avg-work=0.136932, imbalance=1.129). FOF: Marked=149336 out of the 71041966 primaries which are linked FOF: begin linking across processors (presently allocated=197.575 MB) FOF: have done 12024 cross links (processed 149336, took 0.006334 sec) FOF: have done 2525 cross links (processed 70424, took 0.00533941 sec) FOF: have done 404 cross links (processed 9997, took 0.00489986 sec) FOF: have done 53 cross links (processed 1410, took 0.00448652 sec) FOF: have done 7 cross links (processed 137, took 0.00441846 sec) FOF: have done 3 cross links (processed 24, took 0.004382 sec) FOF: have done 1 cross links (processed 8, took 0.00440725 sec) FOF: have done 0 cross links (processed 2, took 0.00441393 sec) FOF: Local groups found. FOF: primary group finding took = 0.206443 sec FOF: Start finding nearest dm-particle (presently allocated=195.681 MB) FOF: fof-nearest iteration 1: need to repeat for 61482416 particles. (took = 0.0938723 sec) FOF: fof-nearest iteration 2: need to repeat for 54568430 particles. (took = 0.103756 sec) FOF: fof-nearest iteration 3: need to repeat for 36604113 particles. (took = 0.11209 sec) FOF: fof-nearest iteration 4: need to repeat for 14660122 particles. (took = 0.0927094 sec) FOF: fof-nearest iteration 5: need to repeat for 2287098 particles. (took = 0.0472661 sec) FOF: fof-nearest iteration 6: need to repeat for 61781 particles. (took = 0.0121828 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.470283 sec FOF: compiling local group data and catalogue took = 0.0269853 sec FOF: Total number of FOF groups with at least 32 particles: 1466917 FOF: Largest FOF group has 92 particles. FOF: Total number of particles in FOF groups: 133997459 FOF: group properties are now allocated.. (presently allocated=178.132 MB) FOF: computation of group properties took = 0.0110446 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.104211 sec FOF: Finished computing FoF groups. Complete work took 0.970001 sec (presently allocated=173.053 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=183.397 MB) GRAVTREE: Tree construction done. took 0.163874 sec =111012 NTopnodes=19625 NTopleaves=17172 tree-build-scalability=0.823626 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133871237 particles. (took 0.83028 sec) SUBFIND: ngb iteration 2: need to repeat for 133649162 particles. (took 0.730446 sec) SUBFIND: ngb iteration 3: need to repeat for 133248926 particles. (took 0.701556 sec) SUBFIND: ngb iteration 4: need to repeat for 132465122 particles. (took 0.675327 sec) SUBFIND: ngb iteration 5: need to repeat for 130930885 particles. (took 0.662982 sec) SUBFIND: ngb iteration 6: need to repeat for 127877276 particles. (took 0.663069 sec) SUBFIND: ngb iteration 7: need to repeat for 121875790 particles. (took 0.664953 sec) SUBFIND: ngb iteration 8: need to repeat for 111080146 particles. (took 0.645019 sec) SUBFIND: ngb iteration 9: need to repeat for 96034850 particles. (took 0.587732 sec) SUBFIND: ngb iteration 10: need to repeat for 82058103 particles. (took 0.499709 sec) SUBFIND: ngb iteration 11: need to repeat for 72892072 particles. (took 0.417076 sec) SUBFIND: ngb iteration 12: need to repeat for 67954581 particles. (took 0.372265 sec) SUBFIND: ngb iteration 13: need to repeat for 65529218 particles. (took 0.352445 sec) SUBFIND: ngb iteration 14: need to repeat for 64336841 particles. (took 0.342441 sec) SUBFIND: ngb iteration 15: need to repeat for 63704685 particles. (took 0.332071 sec) SUBFIND: ngb iteration 16: need to repeat for 63327725 particles. (took 0.315351 sec) SUBFIND: ngb iteration 17: need to repeat for 63075734 particles. (took 0.293126 sec) SUBFIND: ngb iteration 18: need to repeat for 62893345 particles. (took 0.269563 sec) SUBFIND: ngb iteration 19: need to repeat for 62752482 particles. (took 0.249124 sec) SUBFIND: ngb iteration 20: need to repeat for 62628037 particles. (took 0.236346 sec) SUBFIND: ngb iteration 21: need to repeat for 62500804 particles. (took 0.231281 sec) SUBFIND: ngb iteration 22: need to repeat for 62350965 particles. (took 0.23108 sec) SUBFIND: ngb iteration 23: need to repeat for 62157594 particles. (took 0.233371 sec) SUBFIND: ngb iteration 24: need to repeat for 61902834 particles. (took 0.236206 sec) SUBFIND: ngb iteration 25: need to repeat for 61559026 particles. (took 0.240767 sec) SUBFIND: ngb iteration 26: need to repeat for 61094731 particles. (took 0.250207 sec) SUBFIND: ngb iteration 27: need to repeat for 60463460 particles. (took 0.261576 sec) SUBFIND: ngb iteration 28: need to repeat for 59596606 particles. (took 0.277866 sec) SUBFIND: ngb iteration 29: need to repeat for 58432974 particles. (took 0.30243 sec) SUBFIND: ngb iteration 30: need to repeat for 56870915 particles. (took 0.330451 sec) SUBFIND: ngb iteration 31: need to repeat for 54792752 particles. (took 0.358806 sec) SUBFIND: ngb iteration 32: need to repeat for 52089852 particles. (took 0.378905 sec) SUBFIND: ngb iteration 33: need to repeat for 48641408 particles. (took 0.392452 sec) SUBFIND: ngb iteration 34: need to repeat for 44353883 particles. (took 0.396515 sec) SUBFIND: ngb iteration 35: need to repeat for 39190906 particles. (took 0.384844 sec) SUBFIND: ngb iteration 36: need to repeat for 33244566 particles. (took 0.354267 sec) SUBFIND: ngb iteration 37: need to repeat for 26768149 particles. (took 0.315907 sec) SUBFIND: ngb iteration 38: need to repeat for 20179072 particles. (took 0.271443 sec) SUBFIND: ngb iteration 39: need to repeat for 14029128 particles. (took 0.222966 sec) SUBFIND: ngb iteration 40: need to repeat for 8832399 particles. (took 0.170759 sec) SUBFIND: ngb iteration 41: need to repeat for 4915334 particles. (took 0.120333 sec) SUBFIND: ngb iteration 42: need to repeat for 2350374 particles. (took 0.0765536 sec) SUBFIND: ngb iteration 43: need to repeat for 941724 particles. (took 0.043867 sec) SUBFIND: ngb iteration 44: need to repeat for 305040 particles. (took 0.0215231 sec) SUBFIND: ngb iteration 45: need to repeat for 74250 particles. (took 0.00898337 sec) SUBFIND: ngb iteration 46: need to repeat for 13650 particles. (took 0.00371509 sec) SUBFIND: ngb iteration 47: need to repeat for 1468 particles. (took 0.00109626 sec) SUBFIND: ngb iteration 48: need to repeat for 141 particles. (took 0.000390613 sec) SUBFIND: ngb iteration 49: need to repeat for 1 particles. (took 0.000218226 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 15.9677 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997459 particles, for threshold size factor 0.6) SUBFIND: The other 1466917 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00425731 sec SUBFIND: particle balance=1.11958 SUBFIND: subfind_exchange() took 0.450562 sec SUBFIND: particle balance for processing=1.00011 SUBFIND: subdomain decomposition took 0.104022 sec SUBFIND: serial subfind subdomain decomposition took 0.103374 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3396 took 80.3435 sec SUBFIND: root-task=0: Serial processing of halo 0 took 80.5963 SUBFIND: Processing overall took (total time=81.4322 sec) SUBFIND: 0 out of 10508 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 242860 SUBFIND: subfind_exchange() (for return to original CPU) took 0.508801 sec TREE: Full tree construction for all particles. (presently allocated=160.456 MB) GRAVTREE: Tree construction done. took 1.52297 sec =111012 NTopnodes=19625 NTopleaves=17172 tree-build-scalability=0.823626 SUBFIND: SO iteration 1: need to repeat for 1466909 halo centers. (took 0.0266925 sec) SUBFIND: SO iteration 2: need to repeat for 1466909 halo centers. (took 0.0228238 sec) SUBFIND: SO iteration 3: need to repeat for 1466909 halo centers. (took 0.0228315 sec) SUBFIND: SO iteration 4: need to repeat for 1466909 halo centers. (took 0.0222444 sec) SUBFIND: SO iteration 5: need to repeat for 1466909 halo centers. (took 0.0221582 sec) SUBFIND: SO iteration 6: need to repeat for 1466909 halo centers. (took 0.0221504 sec) SUBFIND: SO iteration 7: need to repeat for 1466909 halo centers. (took 0.0221738 sec) SUBFIND: SO iteration 8: need to repeat for 1466909 halo centers. (took 0.0221289 sec) SUBFIND: SO iteration 9: need to repeat for 1466909 halo centers. (took 0.022128 sec) SUBFIND: SO iteration 10: need to repeat for 1466909 halo centers. (took 0.0228445 sec) SUBFIND: SO iteration 11: need to repeat for 1466909 halo centers. (took 0.0221324 sec) SUBFIND: SO iteration 12: need to repeat for 1466909 halo centers. (took 0.0224887 sec) SUBFIND: SO iteration 13: need to repeat for 1466909 halo centers. (took 0.0227291 sec) SUBFIND: SO iteration 14: need to repeat for 1466909 halo centers. (took 0.023045 sec) SUBFIND: SO iteration 15: need to repeat for 1466909 halo centers. (took 0.0230877 sec) SUBFIND: SO iteration 16: need to repeat for 76817 halo centers. (took 0.0226424 sec) SUBFIND: SO iteration 17: need to repeat for 1010 halo centers. (took 0.00568327 sec) SUBFIND: SO iteration 18: need to repeat for 9 halo centers. (took 0.000340208 sec) SUBFIND: SO iteration 1: need to repeat for 1466909 halo centers. (took 0.0221816 sec) SUBFIND: SO iteration 2: need to repeat for 1466909 halo centers. (took 0.0219478 sec) SUBFIND: SO iteration 3: need to repeat for 1466909 halo centers. (took 0.0228968 sec) SUBFIND: SO iteration 4: need to repeat for 1466909 halo centers. (took 0.0223992 sec) SUBFIND: SO iteration 5: need to repeat for 1466909 halo centers. (took 0.0233591 sec) SUBFIND: SO iteration 6: need to repeat for 1466909 halo centers. (took 0.0226503 sec) SUBFIND: SO iteration 7: need to repeat for 1466909 halo centers. (took 0.0220584 sec) SUBFIND: SO iteration 8: need to repeat for 1466909 halo centers. (took 0.0220603 sec) SUBFIND: SO iteration 9: need to repeat for 1466909 halo centers. (took 0.0219832 sec) SUBFIND: SO iteration 10: need to repeat for 1466909 halo centers. (took 0.0219884 sec) SUBFIND: SO iteration 11: need to repeat for 1466909 halo centers. (took 0.0224669 sec) SUBFIND: SO iteration 12: need to repeat for 1466909 halo centers. (took 0.0220475 sec) SUBFIND: SO iteration 13: need to repeat for 1466909 halo centers. (took 0.0220493 sec) SUBFIND: SO iteration 14: need to repeat for 1466909 halo centers. (took 0.0220408 sec) SUBFIND: SO iteration 15: need to repeat for 1466909 halo centers. (took 0.0220367 sec) SUBFIND: SO iteration 16: need to repeat for 43324 halo centers. (took 0.0214927 sec) SUBFIND: SO iteration 17: need to repeat for 438 halo centers. (took 0.00363826 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00021163 sec) SUBFIND: SO iteration 1: need to repeat for 1466909 halo centers. (took 0.022501 sec) SUBFIND: SO iteration 2: need to repeat for 1466909 halo centers. (took 0.022629 sec) SUBFIND: SO iteration 3: need to repeat for 1466909 halo centers. (took 0.0231336 sec) SUBFIND: SO iteration 4: need to repeat for 1466909 halo centers. (took 0.022084 sec) SUBFIND: SO iteration 5: need to repeat for 1466909 halo centers. (took 0.0220062 sec) SUBFIND: SO iteration 6: need to repeat for 1466909 halo centers. (took 0.0220353 sec) SUBFIND: SO iteration 7: need to repeat for 1466909 halo centers. (took 0.0220762 sec) SUBFIND: SO iteration 8: need to repeat for 1466909 halo centers. (took 0.0221319 sec) SUBFIND: SO iteration 9: need to repeat for 1466909 halo centers. (took 0.0220272 sec) SUBFIND: SO iteration 10: need to repeat for 1466909 halo centers. (took 0.0219907 sec) SUBFIND: SO iteration 11: need to repeat for 1466909 halo centers. (took 0.0220496 sec) SUBFIND: SO iteration 12: need to repeat for 1466909 halo centers. (took 0.022041 sec) SUBFIND: SO iteration 13: need to repeat for 1466909 halo centers. (took 0.022071 sec) SUBFIND: SO iteration 14: need to repeat for 1466909 halo centers. (took 0.0220675 sec) SUBFIND: SO iteration 15: need to repeat for 1466909 halo centers. (took 0.0221409 sec) SUBFIND: SO iteration 16: need to repeat for 78558 halo centers. (took 0.0214679 sec) SUBFIND: SO iteration 17: need to repeat for 1050 halo centers. (took 0.00550345 sec) SUBFIND: SO iteration 18: need to repeat for 12 halo centers. (took 0.000303159 sec) SUBFIND: SO iteration 1: need to repeat for 1466909 halo centers. (took 0.0221125 sec) SUBFIND: SO iteration 2: need to repeat for 1466909 halo centers. (took 0.0221013 sec) SUBFIND: SO iteration 3: need to repeat for 1466909 halo centers. (took 0.0214698 sec) SUBFIND: SO iteration 4: need to repeat for 1466909 halo centers. (took 0.0220066 sec) SUBFIND: SO iteration 5: need to repeat for 1466909 halo centers. (took 0.0218084 sec) SUBFIND: SO iteration 6: need to repeat for 1466909 halo centers. (took 0.0219719 sec) SUBFIND: SO iteration 7: need to repeat for 1466909 halo centers. (took 0.021885 sec) SUBFIND: SO iteration 8: need to repeat for 1466909 halo centers. (took 0.0219688 sec) SUBFIND: SO iteration 9: need to repeat for 1466909 halo centers. (took 0.0219127 sec) SUBFIND: SO iteration 10: need to repeat for 1466909 halo centers. (took 0.0220801 sec) SUBFIND: SO iteration 11: need to repeat for 1466909 halo centers. (took 0.0219011 sec) SUBFIND: SO iteration 12: need to repeat for 1466909 halo centers. (took 0.0219621 sec) SUBFIND: SO iteration 13: need to repeat for 1466909 halo centers. (took 0.0219776 sec) SUBFIND: SO iteration 14: need to repeat for 1466909 halo centers. (took 0.0219198 sec) SUBFIND: SO iteration 15: need to repeat for 1466909 halo centers. (took 0.0220498 sec) SUBFIND: SO iteration 16: need to repeat for 1099418 halo centers. (took 0.0217845 sec) SUBFIND: SO iteration 17: need to repeat for 75606 halo centers. (took 0.0176204 sec) SUBFIND: SO iteration 18: need to repeat for 5896 halo centers. (took 0.00476691 sec) SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.00110172 sec) SUBFIND: determining spherical overdensity masses took 1.46922 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0926499 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.50982 sec, total size 550.536 MB, corresponds to effective I/O rate of 364.638 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.51141 sec SUBFIND: Finished with SUBFIND. (total time=103.202 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1477322 SUBFIND: Largest subhalo has 92 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133996176 FOF: preparing output order of particles took 1.51612 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.3107 sec, total size 5320.83 MB, corresponds to effective I/O rate of 727.814 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 226 (rank 226 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 230 (rank 230 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 232 (rank 232 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 242 (rank 242 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.