TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186498.15 Mb (on task= 108), Smallest = 186403.42 Mb (on task= 0), Average = 186447.28 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5111.92 Mb (on task= 0), Smallest = 5017.18 Mb (on task= 108), Average = 5068.05 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5111.92 Mb (on task= 0), Smallest = 5017.18 Mb (on task= 108), Average = 5068.05 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 297), Smallest = 95321.40 Mb (on task= 99), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.3014 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 63894727 (tot= 63894727) masstab= 0 READIC: Type 1: 70088223 (tot= 70088223) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 14547 (tot= 14547) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.14971 sec, total size 6377.66 MB, corresponds to effective I/O rate of 1536.89 MB/sec READIC: Total number of particles : 133997497 INIT: Testing ID uniqueness... INIT: success. took=0.0730753 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=19846, determination of top-level tree involved 5 iterations and took 0.62945 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=169 for nextra=78, reaching maximum imbalance of 1.10603|1.10688 DOMAIN: combining multiple-domains took 0.0137439 sec DOMAIN: exchange of 70102770 particles DOMAIN: particle exchange done. (took 0.38231 sec) DOMAIN: domain decomposition done. (took in total 1.03595 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0735007 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=172.532 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.15843 sec =80245.8 NTopnodes=22681 NTopleaves=19846 FOF: Start linking particles (presently allocated=192.798 MB) FOF: linking of small cells took 0.00221051 sec FOF: local links done (took 0.154185 sec, avg-work=0.138109, imbalance=1.11293). FOF: Marked=148629 out of the 70088223 primaries which are linked FOF: begin linking across processors (presently allocated=194.679 MB) FOF: have done 11277 cross links (processed 148629, took 0.00613993 sec) FOF: have done 2557 cross links (processed 71788, took 0.005359 sec) FOF: have done 420 cross links (processed 10414, took 0.00468938 sec) FOF: have done 80 cross links (processed 1569, took 0.00450431 sec) FOF: have done 13 cross links (processed 295, took 0.0043896 sec) FOF: have done 1 cross links (processed 56, took 0.00442302 sec) FOF: have done 0 cross links (processed 3, took 0.00445798 sec) FOF: Local groups found. FOF: primary group finding took = 0.200531 sec FOF: Start finding nearest dm-particle (presently allocated=192.798 MB) FOF: fof-nearest iteration 1: need to repeat for 62191084 particles. (took = 0.0960693 sec) FOF: fof-nearest iteration 2: need to repeat for 54205091 particles. (took = 0.107265 sec) FOF: fof-nearest iteration 3: need to repeat for 34589069 particles. (took = 0.115673 sec) FOF: fof-nearest iteration 4: need to repeat for 13009681 particles. (took = 0.0913339 sec) FOF: fof-nearest iteration 5: need to repeat for 1941312 particles. (took = 0.0435916 sec) FOF: fof-nearest iteration 6: need to repeat for 52999 particles. (took = 0.0107987 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.473144 sec FOF: compiling local group data and catalogue took = 0.0265855 sec FOF: Total number of FOF groups with at least 32 particles: 1252130 FOF: Largest FOF group has 108 particles. FOF: Total number of particles in FOF groups: 133997497 FOF: group properties are now allocated.. (presently allocated=178.666 MB) FOF: computation of group properties took = 0.0103017 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.0991595 sec FOF: Finished computing FoF groups. Complete work took 1.02705 sec (presently allocated=173.619 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=180.651 MB) GRAVTREE: Tree construction done. took 0.531081 sec =110149 NTopnodes=22681 NTopleaves=19846 tree-build-scalability=0.794565 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 131114912 particles. (took 0.840484 sec) SUBFIND: ngb iteration 2: need to repeat for 129237658 particles. (took 0.739161 sec) SUBFIND: ngb iteration 3: need to repeat for 127372825 particles. (took 0.708377 sec) SUBFIND: ngb iteration 4: need to repeat for 125371825 particles. (took 0.666429 sec) SUBFIND: ngb iteration 5: need to repeat for 122657864 particles. (took 0.641818 sec) SUBFIND: ngb iteration 6: need to repeat for 118138533 particles. (took 0.626207 sec) SUBFIND: ngb iteration 7: need to repeat for 110082970 particles. (took 0.608611 sec) SUBFIND: ngb iteration 8: need to repeat for 97884148 particles. (took 0.5727 sec) SUBFIND: ngb iteration 9: need to repeat for 84913530 particles. (took 0.510801 sec) SUBFIND: ngb iteration 10: need to repeat for 75340687 particles. (took 0.43819 sec) SUBFIND: ngb iteration 11: need to repeat for 69803034 particles. (took 0.387343 sec) SUBFIND: ngb iteration 12: need to repeat for 66973832 particles. (took 0.363659 sec) SUBFIND: ngb iteration 13: need to repeat for 65540152 particles. (took 0.36014 sec) SUBFIND: ngb iteration 14: need to repeat for 64471651 particles. (took 0.3597 sec) SUBFIND: ngb iteration 15: need to repeat for 63057078 particles. (took 0.35087 sec) SUBFIND: ngb iteration 16: need to repeat for 61128652 particles. (took 0.330691 sec) SUBFIND: ngb iteration 17: need to repeat for 59243182 particles. (took 0.301658 sec) SUBFIND: ngb iteration 18: need to repeat for 58044927 particles. (took 0.27202 sec) SUBFIND: ngb iteration 19: need to repeat for 57534106 particles. (took 0.249575 sec) SUBFIND: ngb iteration 20: need to repeat for 57336891 particles. (took 0.236343 sec) SUBFIND: ngb iteration 21: need to repeat for 57201630 particles. (took 0.231859 sec) SUBFIND: ngb iteration 22: need to repeat for 57057687 particles. (took 0.232066 sec) SUBFIND: ngb iteration 23: need to repeat for 56879950 particles. (took 0.23346 sec) SUBFIND: ngb iteration 24: need to repeat for 56644156 particles. (took 0.236496 sec) SUBFIND: ngb iteration 25: need to repeat for 56326741 particles. (took 0.240231 sec) SUBFIND: ngb iteration 26: need to repeat for 55893849 particles. (took 0.246375 sec) SUBFIND: ngb iteration 27: need to repeat for 55298804 particles. (took 0.254376 sec) SUBFIND: ngb iteration 28: need to repeat for 54483289 particles. (took 0.264188 sec) SUBFIND: ngb iteration 29: need to repeat for 53368952 particles. (took 0.281172 sec) SUBFIND: ngb iteration 30: need to repeat for 51863272 particles. (took 0.308892 sec) SUBFIND: ngb iteration 31: need to repeat for 49849172 particles. (took 0.332475 sec) SUBFIND: ngb iteration 32: need to repeat for 47223457 particles. (took 0.360396 sec) SUBFIND: ngb iteration 33: need to repeat for 43872013 particles. (took 0.378848 sec) SUBFIND: ngb iteration 34: need to repeat for 39714513 particles. (took 0.377302 sec) SUBFIND: ngb iteration 35: need to repeat for 34738380 particles. (took 0.371658 sec) SUBFIND: ngb iteration 36: need to repeat for 29075009 particles. (took 0.336808 sec) SUBFIND: ngb iteration 37: need to repeat for 22977640 particles. (took 0.290821 sec) SUBFIND: ngb iteration 38: need to repeat for 16894223 particles. (took 0.240274 sec) SUBFIND: ngb iteration 39: need to repeat for 11356465 particles. (took 0.191958 sec) SUBFIND: ngb iteration 40: need to repeat for 6838936 particles. (took 0.143484 sec) SUBFIND: ngb iteration 41: need to repeat for 3599682 particles. (took 0.0966275 sec) SUBFIND: ngb iteration 42: need to repeat for 1618177 particles. (took 0.0594329 sec) SUBFIND: ngb iteration 43: need to repeat for 605529 particles. (took 0.0319905 sec) SUBFIND: ngb iteration 44: need to repeat for 182414 particles. (took 0.0161427 sec) SUBFIND: ngb iteration 45: need to repeat for 42567 particles. (took 0.00703695 sec) SUBFIND: ngb iteration 46: need to repeat for 7642 particles. (took 0.00255297 sec) SUBFIND: ngb iteration 47: need to repeat for 882 particles. (took 0.0010184 sec) SUBFIND: ngb iteration 48: need to repeat for 30 particles. (took 0.000373079 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 15.3418 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997497 particles, for threshold size factor 0.6) SUBFIND: The other 1252130 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00384781 sec SUBFIND: particle balance=1.10603 SUBFIND: subfind_exchange() took 0.450617 sec SUBFIND: particle balance for processing=1.00019 SUBFIND: subdomain decomposition took 0.105131 sec SUBFIND: serial subfind subdomain decomposition took 0.103544 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2899 took 68.8657 sec SUBFIND: root-task=0: Serial processing of halo 0 took 69.1209 SUBFIND: Processing overall took (total time=69.6134 sec) SUBFIND: 0 out of 13625 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 246508 SUBFIND: subfind_exchange() (for return to original CPU) took 0.508548 sec TREE: Full tree construction for all particles. (presently allocated=160.858 MB) GRAVTREE: Tree construction done. took 1.39875 sec =110149 NTopnodes=22681 NTopleaves=19846 tree-build-scalability=0.794565 SUBFIND: SO iteration 1: need to repeat for 1252126 halo centers. (took 0.0248356 sec) SUBFIND: SO iteration 2: need to repeat for 1252126 halo centers. (took 0.0221504 sec) SUBFIND: SO iteration 3: need to repeat for 1252126 halo centers. (took 0.0212048 sec) SUBFIND: SO iteration 4: need to repeat for 1252126 halo centers. (took 0.0208164 sec) SUBFIND: SO iteration 5: need to repeat for 1252126 halo centers. (took 0.0205459 sec) SUBFIND: SO iteration 6: need to repeat for 1252126 halo centers. (took 0.0205616 sec) SUBFIND: SO iteration 7: need to repeat for 1252126 halo centers. (took 0.0220891 sec) SUBFIND: SO iteration 8: need to repeat for 1252126 halo centers. (took 0.0204098 sec) SUBFIND: SO iteration 9: need to repeat for 1252126 halo centers. (took 0.0205675 sec) SUBFIND: SO iteration 10: need to repeat for 1252126 halo centers. (took 0.0205247 sec) SUBFIND: SO iteration 11: need to repeat for 1252126 halo centers. (took 0.0204463 sec) SUBFIND: SO iteration 12: need to repeat for 1252126 halo centers. (took 0.0212819 sec) SUBFIND: SO iteration 13: need to repeat for 1252126 halo centers. (took 0.0206183 sec) SUBFIND: SO iteration 14: need to repeat for 1252126 halo centers. (took 0.0204317 sec) SUBFIND: SO iteration 15: need to repeat for 1252126 halo centers. (took 0.0205278 sec) SUBFIND: SO iteration 16: need to repeat for 51188 halo centers. (took 0.0207432 sec) SUBFIND: SO iteration 17: need to repeat for 520 halo centers. (took 0.00407008 sec) SUBFIND: SO iteration 18: need to repeat for 22 halo centers. (took 0.000220006 sec) SUBFIND: SO iteration 1: need to repeat for 1252126 halo centers. (took 0.0205798 sec) SUBFIND: SO iteration 2: need to repeat for 1252126 halo centers. (took 0.019901 sec) SUBFIND: SO iteration 3: need to repeat for 1252126 halo centers. (took 0.0203738 sec) SUBFIND: SO iteration 4: need to repeat for 1252126 halo centers. (took 0.0209504 sec) SUBFIND: SO iteration 5: need to repeat for 1252126 halo centers. (took 0.0205149 sec) SUBFIND: SO iteration 6: need to repeat for 1252126 halo centers. (took 0.0205161 sec) SUBFIND: SO iteration 7: need to repeat for 1252126 halo centers. (took 0.0206341 sec) SUBFIND: SO iteration 8: need to repeat for 1252126 halo centers. (took 0.0206169 sec) SUBFIND: SO iteration 9: need to repeat for 1252126 halo centers. (took 0.0204956 sec) SUBFIND: SO iteration 10: need to repeat for 1252126 halo centers. (took 0.0204842 sec) SUBFIND: SO iteration 11: need to repeat for 1252126 halo centers. (took 0.020535 sec) SUBFIND: SO iteration 12: need to repeat for 1252126 halo centers. (took 0.0204138 sec) SUBFIND: SO iteration 13: need to repeat for 1252126 halo centers. (took 0.0204763 sec) SUBFIND: SO iteration 14: need to repeat for 1252126 halo centers. (took 0.0215548 sec) SUBFIND: SO iteration 15: need to repeat for 1252126 halo centers. (took 0.0209051 sec) SUBFIND: SO iteration 16: need to repeat for 28164 halo centers. (took 0.0199805 sec) SUBFIND: SO iteration 17: need to repeat for 260 halo centers. (took 0.00283845 sec) SUBFIND: SO iteration 18: need to repeat for 7 halo centers. (took 0.000192411 sec) SUBFIND: SO iteration 1: need to repeat for 1252126 halo centers. (took 0.0204947 sec) SUBFIND: SO iteration 2: need to repeat for 1252126 halo centers. (took 0.0208078 sec) SUBFIND: SO iteration 3: need to repeat for 1252126 halo centers. (took 0.0208885 sec) SUBFIND: SO iteration 4: need to repeat for 1252126 halo centers. (took 0.0205796 sec) SUBFIND: SO iteration 5: need to repeat for 1252126 halo centers. (took 0.0204173 sec) SUBFIND: SO iteration 6: need to repeat for 1252126 halo centers. (took 0.0218921 sec) SUBFIND: SO iteration 7: need to repeat for 1252126 halo centers. (took 0.0205035 sec) SUBFIND: SO iteration 8: need to repeat for 1252126 halo centers. (took 0.0204822 sec) SUBFIND: SO iteration 9: need to repeat for 1252126 halo centers. (took 0.0203845 sec) SUBFIND: SO iteration 10: need to repeat for 1252126 halo centers. (took 0.0230418 sec) SUBFIND: SO iteration 11: need to repeat for 1252126 halo centers. (took 0.020521 sec) SUBFIND: SO iteration 12: need to repeat for 1252126 halo centers. (took 0.0205056 sec) SUBFIND: SO iteration 13: need to repeat for 1252126 halo centers. (took 0.020435 sec) SUBFIND: SO iteration 14: need to repeat for 1252126 halo centers. (took 0.0204931 sec) SUBFIND: SO iteration 15: need to repeat for 1252126 halo centers. (took 0.0204288 sec) SUBFIND: SO iteration 16: need to repeat for 52452 halo centers. (took 0.0200168 sec) SUBFIND: SO iteration 17: need to repeat for 541 halo centers. (took 0.00406823 sec) SUBFIND: SO iteration 18: need to repeat for 23 halo centers. (took 0.000222456 sec) SUBFIND: SO iteration 1: need to repeat for 1252126 halo centers. (took 0.0205379 sec) SUBFIND: SO iteration 2: need to repeat for 1252126 halo centers. (took 0.0207571 sec) SUBFIND: SO iteration 3: need to repeat for 1252126 halo centers. (took 0.0202245 sec) SUBFIND: SO iteration 4: need to repeat for 1252126 halo centers. (took 0.0205691 sec) SUBFIND: SO iteration 5: need to repeat for 1252126 halo centers. (took 0.0205297 sec) SUBFIND: SO iteration 6: need to repeat for 1252126 halo centers. (took 0.0204787 sec) SUBFIND: SO iteration 7: need to repeat for 1252126 halo centers. (took 0.0207637 sec) SUBFIND: SO iteration 8: need to repeat for 1252126 halo centers. (took 0.0208303 sec) SUBFIND: SO iteration 9: need to repeat for 1252126 halo centers. (took 0.0213669 sec) SUBFIND: SO iteration 10: need to repeat for 1252126 halo centers. (took 0.0205778 sec) SUBFIND: SO iteration 11: need to repeat for 1252126 halo centers. (took 0.0205823 sec) SUBFIND: SO iteration 12: need to repeat for 1252126 halo centers. (took 0.0205955 sec) SUBFIND: SO iteration 13: need to repeat for 1252126 halo centers. (took 0.0205972 sec) SUBFIND: SO iteration 14: need to repeat for 1252126 halo centers. (took 0.0206036 sec) SUBFIND: SO iteration 15: need to repeat for 1252126 halo centers. (took 0.0205809 sec) SUBFIND: SO iteration 16: need to repeat for 859003 halo centers. (took 0.0205469 sec) SUBFIND: SO iteration 17: need to repeat for 55063 halo centers. (took 0.0153674 sec) SUBFIND: SO iteration 18: need to repeat for 4008 halo centers. (took 0.00422048 sec) SUBFIND: SO iteration 19: need to repeat for 2 halo centers. (took 0.000620065 sec) SUBFIND: determining spherical overdensity masses took 1.36491 sec SUBFIND: assembled and ordered groups and subhalos (took 0.102877 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.48853 sec, total size 470.833 MB, corresponds to effective I/O rate of 316.308 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.48998 sec SUBFIND: Finished with SUBFIND. (total time=90.8794 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1265412 SUBFIND: Largest subhalo has 108 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133996940 FOF: preparing output order of particles took 1.48209 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.34255 sec, total size 5331.66 MB, corresponds to effective I/O rate of 726.132 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 437 (rank 437 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 444 (rank 444 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 424 (rank 424 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 432 (rank 432 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.