TACC: Starting up job 4242144 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186494.20 Mb (on task= 189), Smallest = 186411.98 Mb (on task= 0), Average = 186450.75 Mb Total Mem: Largest = 191515.34 Mb (on task= 0), Smallest = 191515.20 Mb (on task= 81), Average = 191515.32 Mb Committed_AS: Largest = 5103.35 Mb (on task= 0), Smallest = 5021.13 Mb (on task= 189), Average = 5064.58 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5103.35 Mb (on task= 0), Smallest = 5021.13 Mb (on task= 189), Average = 5064.58 Mb avail /dev/shm: Largest = 95321.53 Mb (on task= 297), Smallest = 95321.41 Mb (on task= 107), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c101-083.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.4152 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 65433122 (tot= 65433122) masstab= 0 READIC: Type 1: 68497488 (tot= 68497488) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 66901 (tot= 66901) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.53767 sec, total size 6383.53 MB, corresponds to effective I/O rate of 1406.79 MB/sec READIC: Total number of particles : 133997511 INIT: Testing ID uniqueness... INIT: success. took=0.0729438 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=18719, determination of top-level tree involved 5 iterations and took 0.631811 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11865|1.11973 DOMAIN: combining multiple-domains took 0.0143886 sec DOMAIN: exchange of 68564389 particles DOMAIN: particle exchange done. (took 0.369461 sec) DOMAIN: domain decomposition done. (took in total 1.02643 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0747909 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=173.668 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.162763 sec =71195.1 NTopnodes=21393 NTopleaves=18719 FOF: Start linking particles (presently allocated=193.065 MB) FOF: linking of small cells took 0.00187369 sec FOF: local links done (took 0.16205 sec, avg-work=0.143589, imbalance=1.12309). FOF: Marked=149035 out of the 68497488 primaries which are linked FOF: begin linking across processors (presently allocated=194.933 MB) FOF: have done 9712 cross links (processed 149035, took 0.00606825 sec) FOF: have done 2281 cross links (processed 71335, took 0.00529585 sec) FOF: have done 374 cross links (processed 9901, took 0.00472135 sec) FOF: have done 54 cross links (processed 1465, took 0.00450735 sec) FOF: have done 11 cross links (processed 213, took 0.0044187 sec) FOF: have done 4 cross links (processed 59, took 0.00434686 sec) FOF: have done 1 cross links (processed 9, took 0.00438544 sec) FOF: have done 0 cross links (processed 2, took 0.00434263 sec) FOF: Local groups found. FOF: primary group finding took = 0.212645 sec FOF: Start finding nearest dm-particle (presently allocated=193.065 MB) FOF: fof-nearest iteration 1: need to repeat for 63251813 particles. (took = 0.10368 sec) FOF: fof-nearest iteration 2: need to repeat for 53019017 particles. (took = 0.11885 sec) FOF: fof-nearest iteration 3: need to repeat for 30169689 particles. (took = 0.127253 sec) FOF: fof-nearest iteration 4: need to repeat for 9895463 particles. (took = 0.0900832 sec) FOF: fof-nearest iteration 5: need to repeat for 1345307 particles. (took = 0.037815 sec) FOF: fof-nearest iteration 6: need to repeat for 37808 particles. (took = 0.0088269 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.495101 sec FOF: compiling local group data and catalogue took = 0.0262001 sec FOF: Total number of FOF groups with at least 32 particles: 843868 FOF: Largest FOF group has 160 particles. FOF: Total number of particles in FOF groups: 133997511 FOF: group properties are now allocated.. (presently allocated=179.505 MB) FOF: computation of group properties took = 0.00925619 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.0933231 sec FOF: Finished computing FoF groups. Complete work took 1.05374 sec (presently allocated=174.407 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=180.487 MB) GRAVTREE: Tree construction done. took 0.528953 sec =100642 NTopnodes=21393 NTopleaves=18719 tree-build-scalability=0.787927 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133752805 particles. (took 0.924677 sec) SUBFIND: ngb iteration 2: need to repeat for 133617052 particles. (took 0.766908 sec) SUBFIND: ngb iteration 3: need to repeat for 133499575 particles. (took 0.682066 sec) SUBFIND: ngb iteration 4: need to repeat for 133407273 particles. (took 0.642339 sec) SUBFIND: ngb iteration 5: need to repeat for 133335615 particles. (took 0.62368 sec) SUBFIND: ngb iteration 6: need to repeat for 133279443 particles. (took 0.621316 sec) SUBFIND: ngb iteration 7: need to repeat for 133226491 particles. (took 0.63342 sec) SUBFIND: ngb iteration 8: need to repeat for 133176585 particles. (took 0.660381 sec) SUBFIND: ngb iteration 9: need to repeat for 133133812 particles. (took 0.693029 sec) SUBFIND: ngb iteration 10: need to repeat for 133099535 particles. (took 0.729949 sec) SUBFIND: ngb iteration 11: need to repeat for 132838810 particles. (took 0.767785 sec) SUBFIND: ngb iteration 12: need to repeat for 129445976 particles. (took 0.803006 sec) SUBFIND: ngb iteration 13: need to repeat for 119534585 particles. (took 0.815208 sec) SUBFIND: ngb iteration 14: need to repeat for 106482397 particles. (took 0.783215 sec) SUBFIND: ngb iteration 15: need to repeat for 93163231 particles. (took 0.723953 sec) SUBFIND: ngb iteration 16: need to repeat for 80963090 particles. (took 0.655537 sec) SUBFIND: ngb iteration 17: need to repeat for 68947356 particles. (took 0.590311 sec) SUBFIND: ngb iteration 18: need to repeat for 55643511 particles. (took 0.527299 sec) SUBFIND: ngb iteration 19: need to repeat for 40615252 particles. (took 0.449956 sec) SUBFIND: ngb iteration 20: need to repeat for 25659666 particles. (took 0.363089 sec) SUBFIND: ngb iteration 21: need to repeat for 13485426 particles. (took 0.260406 sec) SUBFIND: ngb iteration 22: need to repeat for 5711018 particles. (took 0.173104 sec) SUBFIND: ngb iteration 23: need to repeat for 1934447 particles. (took 0.0960426 sec) SUBFIND: ngb iteration 24: need to repeat for 608426 particles. (took 0.0412433 sec) SUBFIND: ngb iteration 25: need to repeat for 304806 particles. (took 0.0130545 sec) SUBFIND: ngb iteration 26: need to repeat for 259170 particles. (took 0.00395864 sec) SUBFIND: ngb iteration 27: need to repeat for 251230 particles. (took 0.00373335 sec) SUBFIND: ngb iteration 28: need to repeat for 245525 particles. (took 0.0042611 sec) SUBFIND: ngb iteration 29: need to repeat for 238878 particles. (took 0.00471081 sec) SUBFIND: ngb iteration 30: need to repeat for 228727 particles. (took 0.00470501 sec) SUBFIND: ngb iteration 31: need to repeat for 216587 particles. (took 0.0045785 sec) SUBFIND: ngb iteration 32: need to repeat for 200806 particles. (took 0.00506472 sec) SUBFIND: ngb iteration 33: need to repeat for 180631 particles. (took 0.00575533 sec) SUBFIND: ngb iteration 34: need to repeat for 157454 particles. (took 0.00596198 sec) SUBFIND: ngb iteration 35: need to repeat for 131439 particles. (took 0.00591942 sec) SUBFIND: ngb iteration 36: need to repeat for 103167 particles. (took 0.00546729 sec) SUBFIND: ngb iteration 37: need to repeat for 76530 particles. (took 0.00458635 sec) SUBFIND: ngb iteration 38: need to repeat for 53241 particles. (took 0.00378511 sec) SUBFIND: ngb iteration 39: need to repeat for 33986 particles. (took 0.00233792 sec) SUBFIND: ngb iteration 40: need to repeat for 18792 particles. (took 0.00164128 sec) SUBFIND: ngb iteration 41: need to repeat for 8651 particles. (took 0.00134946 sec) SUBFIND: ngb iteration 42: need to repeat for 3279 particles. (took 0.000889888 sec) SUBFIND: ngb iteration 43: need to repeat for 1198 particles. (took 0.000727119 sec) SUBFIND: ngb iteration 44: need to repeat for 505 particles. (took 0.000614779 sec) SUBFIND: ngb iteration 45: need to repeat for 123 particles. (took 0.000490697 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 14.1199 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997511 particles, for threshold size factor 0.6) SUBFIND: The other 843868 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00299659 sec SUBFIND: particle balance=1.11818 SUBFIND: subfind_exchange() took 0.455189 sec SUBFIND: particle balance for processing=1.00031 SUBFIND: subdomain decomposition took 0.10422 sec SUBFIND: serial subfind subdomain decomposition took 0.10305 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1954 took 46.2195 sec SUBFIND: root-task=0: Serial processing of halo 0 took 46.4733 SUBFIND: Processing overall took (total time=47.2431 sec) SUBFIND: 0 out of 10219 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516966 ALLOCATE: Changing to MaxPartSph = 252443 SUBFIND: subfind_exchange() (for return to original CPU) took 0.514917 sec TREE: Full tree construction for all particles. (presently allocated=162.085 MB) GRAVTREE: Tree construction done. took 1.51894 sec =100642 NTopnodes=21393 NTopleaves=18719 tree-build-scalability=0.787927 SUBFIND: SO iteration 1: need to repeat for 843868 halo centers. (took 0.0208846 sec) SUBFIND: SO iteration 2: need to repeat for 843868 halo centers. (took 0.0182577 sec) SUBFIND: SO iteration 3: need to repeat for 843868 halo centers. (took 0.0179493 sec) SUBFIND: SO iteration 4: need to repeat for 843868 halo centers. (took 0.0178029 sec) SUBFIND: SO iteration 5: need to repeat for 843868 halo centers. (took 0.0173577 sec) SUBFIND: SO iteration 6: need to repeat for 843868 halo centers. (took 0.0174776 sec) SUBFIND: SO iteration 7: need to repeat for 843868 halo centers. (took 0.0174752 sec) SUBFIND: SO iteration 8: need to repeat for 843868 halo centers. (took 0.0173236 sec) SUBFIND: SO iteration 9: need to repeat for 843868 halo centers. (took 0.01727 sec) SUBFIND: SO iteration 10: need to repeat for 843868 halo centers. (took 0.0173301 sec) SUBFIND: SO iteration 11: need to repeat for 843868 halo centers. (took 0.017336 sec) SUBFIND: SO iteration 12: need to repeat for 843868 halo centers. (took 0.0172355 sec) SUBFIND: SO iteration 13: need to repeat for 843868 halo centers. (took 0.017351 sec) SUBFIND: SO iteration 14: need to repeat for 843868 halo centers. (took 0.0173413 sec) SUBFIND: SO iteration 15: need to repeat for 843868 halo centers. (took 0.0172511 sec) SUBFIND: SO iteration 16: need to repeat for 18377 halo centers. (took 0.0169626 sec) SUBFIND: SO iteration 17: need to repeat for 228 halo centers. (took 0.00224196 sec) SUBFIND: SO iteration 18: need to repeat for 7 halo centers. (took 0.000192372 sec) SUBFIND: SO iteration 1: need to repeat for 843868 halo centers. (took 0.0174207 sec) SUBFIND: SO iteration 2: need to repeat for 843868 halo centers. (took 0.0167378 sec) SUBFIND: SO iteration 3: need to repeat for 843868 halo centers. (took 0.01717 sec) SUBFIND: SO iteration 4: need to repeat for 843868 halo centers. (took 0.0184691 sec) SUBFIND: SO iteration 5: need to repeat for 843868 halo centers. (took 0.0171298 sec) SUBFIND: SO iteration 6: need to repeat for 843868 halo centers. (took 0.0171906 sec) SUBFIND: SO iteration 7: need to repeat for 843868 halo centers. (took 0.0172305 sec) SUBFIND: SO iteration 8: need to repeat for 843868 halo centers. (took 0.0171984 sec) SUBFIND: SO iteration 9: need to repeat for 843868 halo centers. (took 0.0172236 sec) SUBFIND: SO iteration 10: need to repeat for 843868 halo centers. (took 0.0172446 sec) SUBFIND: SO iteration 11: need to repeat for 843868 halo centers. (took 0.0174297 sec) SUBFIND: SO iteration 12: need to repeat for 843868 halo centers. (took 0.0172169 sec) SUBFIND: SO iteration 13: need to repeat for 843868 halo centers. (took 0.0171974 sec) SUBFIND: SO iteration 14: need to repeat for 843868 halo centers. (took 0.0176929 sec) SUBFIND: SO iteration 15: need to repeat for 843868 halo centers. (took 0.0182234 sec) SUBFIND: SO iteration 16: need to repeat for 9608 halo centers. (took 0.0172546 sec) SUBFIND: SO iteration 17: need to repeat for 80 halo centers. (took 0.00151249 sec) SUBFIND: SO iteration 18: need to repeat for 5 halo centers. (took 0.000233246 sec) SUBFIND: SO iteration 1: need to repeat for 843868 halo centers. (took 0.0179378 sec) SUBFIND: SO iteration 2: need to repeat for 843868 halo centers. (took 0.0187276 sec) SUBFIND: SO iteration 3: need to repeat for 843868 halo centers. (took 0.018555 sec) SUBFIND: SO iteration 4: need to repeat for 843868 halo centers. (took 0.0179503 sec) SUBFIND: SO iteration 5: need to repeat for 843868 halo centers. (took 0.0176664 sec) SUBFIND: SO iteration 6: need to repeat for 843868 halo centers. (took 0.0176281 sec) SUBFIND: SO iteration 7: need to repeat for 843868 halo centers. (took 0.0177573 sec) SUBFIND: SO iteration 8: need to repeat for 843868 halo centers. (took 0.0176512 sec) SUBFIND: SO iteration 9: need to repeat for 843868 halo centers. (took 0.0176272 sec) SUBFIND: SO iteration 10: need to repeat for 843868 halo centers. (took 0.0175232 sec) SUBFIND: SO iteration 11: need to repeat for 843868 halo centers. (took 0.0181162 sec) SUBFIND: SO iteration 12: need to repeat for 843868 halo centers. (took 0.0174718 sec) SUBFIND: SO iteration 13: need to repeat for 843868 halo centers. (took 0.0172465 sec) SUBFIND: SO iteration 14: need to repeat for 843868 halo centers. (took 0.0173357 sec) SUBFIND: SO iteration 15: need to repeat for 843868 halo centers. (took 0.0174695 sec) SUBFIND: SO iteration 16: need to repeat for 18876 halo centers. (took 0.0168948 sec) SUBFIND: SO iteration 17: need to repeat for 238 halo centers. (took 0.00221836 sec) SUBFIND: SO iteration 18: need to repeat for 7 halo centers. (took 0.000188557 sec) SUBFIND: SO iteration 1: need to repeat for 843868 halo centers. (took 0.0173546 sec) SUBFIND: SO iteration 2: need to repeat for 843868 halo centers. (took 0.0181836 sec) SUBFIND: SO iteration 3: need to repeat for 843868 halo centers. (took 0.017341 sec) SUBFIND: SO iteration 4: need to repeat for 843868 halo centers. (took 0.0179143 sec) SUBFIND: SO iteration 5: need to repeat for 843868 halo centers. (took 0.0178178 sec) SUBFIND: SO iteration 6: need to repeat for 843868 halo centers. (took 0.017841 sec) SUBFIND: SO iteration 7: need to repeat for 843868 halo centers. (took 0.0179047 sec) SUBFIND: SO iteration 8: need to repeat for 843868 halo centers. (took 0.0178422 sec) SUBFIND: SO iteration 9: need to repeat for 843868 halo centers. (took 0.017896 sec) SUBFIND: SO iteration 10: need to repeat for 843868 halo centers. (took 0.0179181 sec) SUBFIND: SO iteration 11: need to repeat for 843868 halo centers. (took 0.0181203 sec) SUBFIND: SO iteration 12: need to repeat for 843868 halo centers. (took 0.0180393 sec) SUBFIND: SO iteration 13: need to repeat for 843868 halo centers. (took 0.0177959 sec) SUBFIND: SO iteration 14: need to repeat for 843868 halo centers. (took 0.0178199 sec) SUBFIND: SO iteration 15: need to repeat for 843868 halo centers. (took 0.0179047 sec) SUBFIND: SO iteration 16: need to repeat for 473487 halo centers. (took 0.0177607 sec) SUBFIND: SO iteration 17: need to repeat for 20105 halo centers. (took 0.0120052 sec) SUBFIND: SO iteration 18: need to repeat for 745 halo centers. (took 0.00218219 sec) SUBFIND: determining spherical overdensity masses took 1.15395 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0822583 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.46398 sec, total size 317.565 MB, corresponds to effective I/O rate of 216.92 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.46502 sec SUBFIND: Finished with SUBFIND. (total time=67.1589 sec) SUBFIND: Total number of subhalos with at least 20 particles: 854031 SUBFIND: Largest subhalo has 160 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133997511 FOF: preparing output order of particles took 1.45499 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.26113 sec, total size 5349.26 MB, corresponds to effective I/O rate of 647.522 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 183 (rank 183 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 185 (rank 185 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 227 (rank 227 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.