TACC: Starting up job 4242141 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186456.08 Mb (on task= 351), Smallest = 186405.36 Mb (on task= 27), Average = 186428.85 Mb Total Mem: Largest = 191515.35 Mb (on task= 351), Smallest = 191515.33 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5109.97 Mb (on task= 27), Smallest = 5059.27 Mb (on task= 351), Average = 5086.48 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5109.97 Mb (on task= 27), Smallest = 5059.27 Mb (on task= 351), Average = 5086.48 Mb avail /dev/shm: Largest = 95321.54 Mb (on task= 351), Smallest = 95321.47 Mb (on task= 53), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c160-031.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.596 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 65795747 (tot= 65795747) masstab= 0 READIC: Type 1: 68014119 (tot= 68014119) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 187568 (tot= 187568) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.73771 sec, total size 6384.91 MB, corresponds to effective I/O rate of 1347.68 MB/sec READIC: Total number of particles : 133997434 INIT: Testing ID uniqueness... INIT: success. took=0.0735698 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=19377, determination of top-level tree involved 5 iterations and took 0.642712 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11906|1.11973 DOMAIN: combining multiple-domains took 0.0192118 sec DOMAIN: exchange of 68201687 particles DOMAIN: particle exchange done. (took 0.348577 sec) DOMAIN: domain decomposition done. (took in total 1.02142 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0751165 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=173.951 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.153966 sec =66346.6 NTopnodes=22145 NTopleaves=19377 FOF: Start linking particles (presently allocated=192.646 MB) FOF: linking of small cells took 0.00215913 sec FOF: local links done (took 0.173397 sec, avg-work=0.153166, imbalance=1.12723). FOF: Marked=146260 out of the 68014119 primaries which are linked FOF: begin linking across processors (presently allocated=194.494 MB) FOF: have done 8415 cross links (processed 146260, took 0.00617246 sec) FOF: have done 2156 cross links (processed 70468, took 0.00530255 sec) FOF: have done 352 cross links (processed 9753, took 0.00476009 sec) FOF: have done 64 cross links (processed 1405, took 0.00449352 sec) FOF: have done 11 cross links (processed 309, took 0.00451548 sec) FOF: have done 1 cross links (processed 52, took 0.00439888 sec) FOF: have done 0 cross links (processed 2, took 0.00437938 sec) FOF: Local groups found. FOF: primary group finding took = 0.219869 sec FOF: Start finding nearest dm-particle (presently allocated=192.646 MB) FOF: fof-nearest iteration 1: need to repeat for 63393354 particles. (took = 0.107965 sec) FOF: fof-nearest iteration 2: need to repeat for 51886580 particles. (took = 0.124857 sec) FOF: fof-nearest iteration 3: need to repeat for 27599992 particles. (took = 0.133313 sec) FOF: fof-nearest iteration 4: need to repeat for 8169411 particles. (took = 0.0900099 sec) FOF: fof-nearest iteration 5: need to repeat for 1025894 particles. (took = 0.0341522 sec) FOF: fof-nearest iteration 6: need to repeat for 28701 particles. (took = 0.00848789 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.507427 sec FOF: compiling local group data and catalogue took = 0.0259524 sec FOF: Total number of FOF groups with at least 32 particles: 565508 FOF: Largest FOF group has 473 particles. FOF: Total number of particles in FOF groups: 133997434 FOF: group properties are now allocated.. (presently allocated=179.531 MB) FOF: computation of group properties took = 0.00870712 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.100508 sec FOF: Finished computing FoF groups. Complete work took 1.07944 sec (presently allocated=174.446 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=179.875 MB) GRAVTREE: Tree construction done. took 0.522124 sec =94955.2 NTopnodes=22145 NTopleaves=19377 tree-build-scalability=0.767325 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133997068 particles. (took 1.04811 sec) SUBFIND: ngb iteration 2: need to repeat for 133996850 particles. (took 0.91252 sec) SUBFIND: ngb iteration 3: need to repeat for 133996716 particles. (took 0.850034 sec) SUBFIND: ngb iteration 4: need to repeat for 133996446 particles. (took 0.811561 sec) SUBFIND: ngb iteration 5: need to repeat for 133996326 particles. (took 0.797243 sec) SUBFIND: ngb iteration 6: need to repeat for 133996039 particles. (took 0.808103 sec) SUBFIND: ngb iteration 7: need to repeat for 133995971 particles. (took 0.830774 sec) SUBFIND: ngb iteration 8: need to repeat for 133995927 particles. (took 0.870016 sec) SUBFIND: ngb iteration 9: need to repeat for 133992785 particles. (took 0.918248 sec) SUBFIND: ngb iteration 10: need to repeat for 133735035 particles. (took 0.973177 sec) SUBFIND: ngb iteration 11: need to repeat for 130390786 particles. (took 1.03433 sec) SUBFIND: ngb iteration 12: need to repeat for 122760722 particles. (took 1.06832 sec) SUBFIND: ngb iteration 13: need to repeat for 112435759 particles. (took 1.05252 sec) SUBFIND: ngb iteration 14: need to repeat for 101046466 particles. (took 1.0101 sec) SUBFIND: ngb iteration 15: need to repeat for 90747842 particles. (took 0.94799 sec) SUBFIND: ngb iteration 16: need to repeat for 81970384 particles. (took 0.886855 sec) SUBFIND: ngb iteration 17: need to repeat for 73894068 particles. (took 0.82657 sec) SUBFIND: ngb iteration 18: need to repeat for 65636151 particles. (took 0.760735 sec) SUBFIND: ngb iteration 19: need to repeat for 56348756 particles. (took 0.692424 sec) SUBFIND: ngb iteration 20: need to repeat for 45141421 particles. (took 0.619075 sec) SUBFIND: ngb iteration 21: need to repeat for 32320271 particles. (took 0.517221 sec) SUBFIND: ngb iteration 22: need to repeat for 19733415 particles. (took 0.393747 sec) SUBFIND: ngb iteration 23: need to repeat for 9680679 particles. (took 0.260781 sec) SUBFIND: ngb iteration 24: need to repeat for 3650777 particles. (took 0.144669 sec) SUBFIND: ngb iteration 25: need to repeat for 976244 particles. (took 0.0641392 sec) SUBFIND: ngb iteration 26: need to repeat for 169864 particles. (took 0.0213802 sec) SUBFIND: ngb iteration 27: need to repeat for 18832 particles. (took 0.00556123 sec) SUBFIND: ngb iteration 28: need to repeat for 1812 particles. (took 0.0013261 sec) SUBFIND: ngb iteration 29: need to repeat for 637 particles. (took 0.000809697 sec) SUBFIND: ngb iteration 30: need to repeat for 545 particles. (took 0.000820195 sec) SUBFIND: ngb iteration 31: need to repeat for 496 particles. (took 0.000760956 sec) SUBFIND: ngb iteration 32: need to repeat for 403 particles. (took 0.00139668 sec) SUBFIND: ngb iteration 33: need to repeat for 396 particles. (took 0.00229467 sec) SUBFIND: ngb iteration 34: need to repeat for 396 particles. (took 0.00221921 sec) SUBFIND: ngb iteration 35: need to repeat for 376 particles. (took 0.002225 sec) SUBFIND: ngb iteration 36: need to repeat for 353 particles. (took 0.0018024 sec) SUBFIND: ngb iteration 37: need to repeat for 318 particles. (took 0.00163745 sec) SUBFIND: ngb iteration 38: need to repeat for 207 particles. (took 0.00131732 sec) SUBFIND: ngb iteration 39: need to repeat for 171 particles. (took 0.0012021 sec) SUBFIND: ngb iteration 40: need to repeat for 148 particles. (took 0.00105578 sec) SUBFIND: ngb iteration 41: need to repeat for 102 particles. (took 0.000911376 sec) SUBFIND: ngb iteration 42: need to repeat for 39 particles. (took 0.00064365 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 19.1554 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997434 particles, for threshold size factor 0.6) SUBFIND: The other 565508 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00239809 sec SUBFIND: particle balance=1.11906 SUBFIND: subfind_exchange() took 0.45299 sec SUBFIND: particle balance for processing=1.00148 SUBFIND: subdomain decomposition took 0.104952 sec SUBFIND: serial subfind subdomain decomposition took 0.10405 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1310 took 32.7412 sec SUBFIND: root-task=0: Serial processing of halo 0 took 32.998 SUBFIND: Processing overall took (total time=33.9496 sec) SUBFIND: 0 out of 52378 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 253841 SUBFIND: subfind_exchange() (for return to original CPU) took 0.521475 sec TREE: Full tree construction for all particles. (presently allocated=162.114 MB) GRAVTREE: Tree construction done. took 1.43133 sec =94955.2 NTopnodes=22145 NTopleaves=19377 tree-build-scalability=0.767325 SUBFIND: SO iteration 1: need to repeat for 565508 halo centers. (took 0.018137 sec) SUBFIND: SO iteration 2: need to repeat for 565508 halo centers. (took 0.0161337 sec) SUBFIND: SO iteration 3: need to repeat for 565508 halo centers. (took 0.0157036 sec) SUBFIND: SO iteration 4: need to repeat for 565508 halo centers. (took 0.015191 sec) SUBFIND: SO iteration 5: need to repeat for 565508 halo centers. (took 0.0150969 sec) SUBFIND: SO iteration 6: need to repeat for 565508 halo centers. (took 0.0168877 sec) SUBFIND: SO iteration 7: need to repeat for 565508 halo centers. (took 0.0149967 sec) SUBFIND: SO iteration 8: need to repeat for 565508 halo centers. (took 0.0152403 sec) SUBFIND: SO iteration 9: need to repeat for 565508 halo centers. (took 0.0166676 sec) SUBFIND: SO iteration 10: need to repeat for 565508 halo centers. (took 0.0154451 sec) SUBFIND: SO iteration 11: need to repeat for 565508 halo centers. (took 0.0161955 sec) SUBFIND: SO iteration 12: need to repeat for 565508 halo centers. (took 0.0149417 sec) SUBFIND: SO iteration 13: need to repeat for 565508 halo centers. (took 0.0150185 sec) SUBFIND: SO iteration 14: need to repeat for 565508 halo centers. (took 0.0153932 sec) SUBFIND: SO iteration 15: need to repeat for 565508 halo centers. (took 0.0149442 sec) SUBFIND: SO iteration 16: need to repeat for 7179 halo centers. (took 0.0147378 sec) SUBFIND: SO iteration 17: need to repeat for 76 halo centers. (took 0.00106948 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000157364 sec) SUBFIND: SO iteration 1: need to repeat for 565508 halo centers. (took 0.0165334 sec) SUBFIND: SO iteration 2: need to repeat for 565508 halo centers. (took 0.0173927 sec) SUBFIND: SO iteration 3: need to repeat for 565508 halo centers. (took 0.0147898 sec) SUBFIND: SO iteration 4: need to repeat for 565508 halo centers. (took 0.0149965 sec) SUBFIND: SO iteration 5: need to repeat for 565508 halo centers. (took 0.0150526 sec) SUBFIND: SO iteration 6: need to repeat for 565508 halo centers. (took 0.0148841 sec) SUBFIND: SO iteration 7: need to repeat for 565508 halo centers. (took 0.0153146 sec) SUBFIND: SO iteration 8: need to repeat for 565508 halo centers. (took 0.0149825 sec) SUBFIND: SO iteration 9: need to repeat for 565508 halo centers. (took 0.014937 sec) SUBFIND: SO iteration 10: need to repeat for 565508 halo centers. (took 0.0149915 sec) SUBFIND: SO iteration 11: need to repeat for 565508 halo centers. (took 0.0149523 sec) SUBFIND: SO iteration 12: need to repeat for 565508 halo centers. (took 0.0150031 sec) SUBFIND: SO iteration 13: need to repeat for 565508 halo centers. (took 0.0150153 sec) SUBFIND: SO iteration 14: need to repeat for 565508 halo centers. (took 0.0150656 sec) SUBFIND: SO iteration 15: need to repeat for 565508 halo centers. (took 0.0148304 sec) SUBFIND: SO iteration 16: need to repeat for 3488 halo centers. (took 0.0146078 sec) SUBFIND: SO iteration 17: need to repeat for 21 halo centers. (took 0.000661612 sec) SUBFIND: SO iteration 1: need to repeat for 565508 halo centers. (took 0.0150032 sec) SUBFIND: SO iteration 2: need to repeat for 565508 halo centers. (took 0.0157602 sec) SUBFIND: SO iteration 3: need to repeat for 565508 halo centers. (took 0.0155178 sec) SUBFIND: SO iteration 4: need to repeat for 565508 halo centers. (took 0.0150589 sec) SUBFIND: SO iteration 5: need to repeat for 565508 halo centers. (took 0.014984 sec) SUBFIND: SO iteration 6: need to repeat for 565508 halo centers. (took 0.0148956 sec) SUBFIND: SO iteration 7: need to repeat for 565508 halo centers. (took 0.0150063 sec) SUBFIND: SO iteration 8: need to repeat for 565508 halo centers. (took 0.014948 sec) SUBFIND: SO iteration 9: need to repeat for 565508 halo centers. (took 0.0148845 sec) SUBFIND: SO iteration 10: need to repeat for 565508 halo centers. (took 0.0149315 sec) SUBFIND: SO iteration 11: need to repeat for 565508 halo centers. (took 0.0149441 sec) SUBFIND: SO iteration 12: need to repeat for 565508 halo centers. (took 0.0149062 sec) SUBFIND: SO iteration 13: need to repeat for 565508 halo centers. (took 0.0151475 sec) SUBFIND: SO iteration 14: need to repeat for 565508 halo centers. (took 0.0153929 sec) SUBFIND: SO iteration 15: need to repeat for 565508 halo centers. (took 0.0153169 sec) SUBFIND: SO iteration 16: need to repeat for 7400 halo centers. (took 0.0156109 sec) SUBFIND: SO iteration 17: need to repeat for 79 halo centers. (took 0.00109345 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000154626 sec) SUBFIND: SO iteration 1: need to repeat for 565508 halo centers. (took 0.0149023 sec) SUBFIND: SO iteration 2: need to repeat for 565508 halo centers. (took 0.0160367 sec) SUBFIND: SO iteration 3: need to repeat for 565508 halo centers. (took 0.0156128 sec) SUBFIND: SO iteration 4: need to repeat for 565508 halo centers. (took 0.0167719 sec) SUBFIND: SO iteration 5: need to repeat for 565508 halo centers. (took 0.0156904 sec) SUBFIND: SO iteration 6: need to repeat for 565508 halo centers. (took 0.0157029 sec) SUBFIND: SO iteration 7: need to repeat for 565508 halo centers. (took 0.0156641 sec) SUBFIND: SO iteration 8: need to repeat for 565508 halo centers. (took 0.0162514 sec) SUBFIND: SO iteration 9: need to repeat for 565508 halo centers. (took 0.0156542 sec) SUBFIND: SO iteration 10: need to repeat for 565508 halo centers. (took 0.016316 sec) SUBFIND: SO iteration 11: need to repeat for 565508 halo centers. (took 0.0157771 sec) SUBFIND: SO iteration 12: need to repeat for 565508 halo centers. (took 0.0156833 sec) SUBFIND: SO iteration 13: need to repeat for 565508 halo centers. (took 0.0165521 sec) SUBFIND: SO iteration 14: need to repeat for 565508 halo centers. (took 0.0190827 sec) SUBFIND: SO iteration 15: need to repeat for 565508 halo centers. (took 0.017517 sec) SUBFIND: SO iteration 16: need to repeat for 292697 halo centers. (took 0.0156162 sec) SUBFIND: SO iteration 17: need to repeat for 7373 halo centers. (took 0.0103552 sec) SUBFIND: SO iteration 18: need to repeat for 188 halo centers. (took 0.00108011 sec) SUBFIND: determining spherical overdensity masses took 1.01256 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0742381 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.48792 sec, total size 222.175 MB, corresponds to effective I/O rate of 149.319 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.48889 sec SUBFIND: Finished with SUBFIND. (total time=58.6834 sec) SUBFIND: Total number of subhalos with at least 20 particles: 617766 SUBFIND: Largest subhalo has 473 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133997434 FOF: preparing output order of particles took 1.40459 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.57765 sec, total size 5353.41 MB, corresponds to effective I/O rate of 706.473 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 147 (rank 147 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 165 (rank 165 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.