TACC: Starting up job 4242141 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186450.68 Mb (on task= 54), Smallest = 186404.34 Mb (on task= 297), Average = 186429.86 Mb Total Mem: Largest = 191515.35 Mb (on task= 351), Smallest = 191515.33 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5110.99 Mb (on task= 297), Smallest = 5064.65 Mb (on task= 54), Average = 5085.47 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5110.99 Mb (on task= 297), Smallest = 5064.65 Mb (on task= 54), Average = 5085.47 Mb avail /dev/shm: Largest = 95321.54 Mb (on task= 351), Smallest = 95321.47 Mb (on task= 45), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c172-003.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.2876 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 65746222 (tot= 65746222) masstab= 0 READIC: Type 1: 68027576 (tot= 68027576) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 223504 (tot= 223504) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.70135 sec, total size 6384.71 MB, corresponds to effective I/O rate of 1358.06 MB/sec READIC: Total number of particles : 133997302 INIT: Testing ID uniqueness... INIT: success. took=0.0750594 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=19174, determination of top-level tree involved 5 iterations and took 0.637172 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11955|1.11973 DOMAIN: combining multiple-domains took 0.0137161 sec DOMAIN: exchange of 68251080 particles DOMAIN: particle exchange done. (took 0.344302 sec) DOMAIN: domain decomposition done. (took in total 1.00599 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0760584 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=173.911 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.154286 sec =65185.3 NTopnodes=21913 NTopleaves=19174 FOF: Start linking particles (presently allocated=192.569 MB) FOF: linking of small cells took 0.00192953 sec FOF: local links done (took 0.175669 sec, avg-work=0.155529, imbalance=1.12167). FOF: Marked=152616 out of the 68027576 primaries which are linked FOF: begin linking across processors (presently allocated=194.428 MB) FOF: have done 8524 cross links (processed 152616, took 0.00617347 sec) FOF: have done 2243 cross links (processed 74940, took 0.0052781 sec) FOF: have done 389 cross links (processed 10250, took 0.00479766 sec) FOF: have done 73 cross links (processed 1577, took 0.004581 sec) FOF: have done 12 cross links (processed 316, took 0.00450496 sec) FOF: have done 3 cross links (processed 66, took 0.0044469 sec) FOF: have done 0 cross links (processed 6, took 0.00447398 sec) FOF: Local groups found. FOF: primary group finding took = 0.222373 sec FOF: Start finding nearest dm-particle (presently allocated=192.569 MB) FOF: fof-nearest iteration 1: need to repeat for 63310874 particles. (took = 0.109695 sec) FOF: fof-nearest iteration 2: need to repeat for 51605557 particles. (took = 0.12746 sec) FOF: fof-nearest iteration 3: need to repeat for 27192254 particles. (took = 0.136724 sec) FOF: fof-nearest iteration 4: need to repeat for 7921059 particles. (took = 0.09072 sec) FOF: fof-nearest iteration 5: need to repeat for 981365 particles. (took = 0.0333857 sec) FOF: fof-nearest iteration 6: need to repeat for 27066 particles. (took = 0.00852966 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.514961 sec FOF: compiling local group data and catalogue took = 0.026242 sec FOF: Total number of FOF groups with at least 32 particles: 520535 FOF: Largest FOF group has 260 particles. FOF: Total number of particles in FOF groups: 133997302 FOF: group properties are now allocated.. (presently allocated=179.499 MB) FOF: computation of group properties took = 0.00847382 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.0911377 sec FOF: Finished computing FoF groups. Complete work took 1.0679 sec (presently allocated=174.371 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=179.682 MB) GRAVTREE: Tree construction done. took 0.527737 sec =93596.4 NTopnodes=21913 NTopleaves=19174 tree-build-scalability=0.76642 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133997234 particles. (took 1.08126 sec) SUBFIND: ngb iteration 2: need to repeat for 133997234 particles. (took 0.962509 sec) SUBFIND: ngb iteration 3: need to repeat for 133997168 particles. (took 0.892248 sec) SUBFIND: ngb iteration 4: need to repeat for 133997039 particles. (took 0.851352 sec) SUBFIND: ngb iteration 5: need to repeat for 133997015 particles. (took 0.841415 sec) SUBFIND: ngb iteration 6: need to repeat for 133997005 particles. (took 0.853986 sec) SUBFIND: ngb iteration 7: need to repeat for 133996908 particles. (took 0.880844 sec) SUBFIND: ngb iteration 8: need to repeat for 133996799 particles. (took 0.918905 sec) SUBFIND: ngb iteration 9: need to repeat for 133988612 particles. (took 0.971621 sec) SUBFIND: ngb iteration 10: need to repeat for 133528170 particles. (took 1.02976 sec) SUBFIND: ngb iteration 11: need to repeat for 129337105 particles. (took 1.09233 sec) SUBFIND: ngb iteration 12: need to repeat for 121764599 particles. (took 1.1167 sec) SUBFIND: ngb iteration 13: need to repeat for 111474450 particles. (took 1.10153 sec) SUBFIND: ngb iteration 14: need to repeat for 100324698 particles. (took 1.06179 sec) SUBFIND: ngb iteration 15: need to repeat for 90455972 particles. (took 1.00169 sec) SUBFIND: ngb iteration 16: need to repeat for 82036134 particles. (took 0.94033 sec) SUBFIND: ngb iteration 17: need to repeat for 74319658 particles. (took 0.882989 sec) SUBFIND: ngb iteration 18: need to repeat for 66535215 particles. (took 0.8194 sec) SUBFIND: ngb iteration 19: need to repeat for 57899320 particles. (took 0.747531 sec) SUBFIND: ngb iteration 20: need to repeat for 47461812 particles. (took 0.66487 sec) SUBFIND: ngb iteration 21: need to repeat for 35184399 particles. (took 0.561329 sec) SUBFIND: ngb iteration 22: need to repeat for 22572685 particles. (took 0.433815 sec) SUBFIND: ngb iteration 23: need to repeat for 11832008 particles. (took 0.301083 sec) SUBFIND: ngb iteration 24: need to repeat for 4844465 particles. (took 0.183984 sec) SUBFIND: ngb iteration 25: need to repeat for 1426844 particles. (took 0.0932584 sec) SUBFIND: ngb iteration 26: need to repeat for 277292 particles. (took 0.0350779 sec) SUBFIND: ngb iteration 27: need to repeat for 34003 particles. (took 0.00904165 sec) SUBFIND: ngb iteration 28: need to repeat for 2912 particles. (took 0.001612 sec) SUBFIND: ngb iteration 29: need to repeat for 646 particles. (took 0.000995988 sec) SUBFIND: ngb iteration 30: need to repeat for 513 particles. (took 0.000805056 sec) SUBFIND: ngb iteration 31: need to repeat for 413 particles. (took 0.000830662 sec) SUBFIND: ngb iteration 32: need to repeat for 400 particles. (took 0.00156935 sec) SUBFIND: ngb iteration 33: need to repeat for 400 particles. (took 0.00144594 sec) SUBFIND: ngb iteration 34: need to repeat for 395 particles. (took 0.00148291 sec) SUBFIND: ngb iteration 35: need to repeat for 390 particles. (took 0.001467 sec) SUBFIND: ngb iteration 36: need to repeat for 305 particles. (took 0.00107047 sec) SUBFIND: ngb iteration 37: need to repeat for 277 particles. (took 0.00104255 sec) SUBFIND: ngb iteration 38: need to repeat for 192 particles. (took 0.00101055 sec) SUBFIND: ngb iteration 39: need to repeat for 108 particles. (took 0.000817075 sec) SUBFIND: ngb iteration 40: need to repeat for 22 particles. (took 0.000586515 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 20.3538 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997302 particles, for threshold size factor 0.6) SUBFIND: The other 520535 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00226515 sec SUBFIND: particle balance=1.11931 SUBFIND: subfind_exchange() took 0.449434 sec SUBFIND: particle balance for processing=1.00006 SUBFIND: subdomain decomposition took 0.104848 sec SUBFIND: serial subfind subdomain decomposition took 0.103646 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1205 took 31.0982 sec SUBFIND: root-task=0: Serial processing of halo 0 took 31.3539 SUBFIND: Processing overall took (total time=32.1507 sec) SUBFIND: 0 out of 63151 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516968 ALLOCATE: Changing to MaxPartSph = 253651 SUBFIND: subfind_exchange() (for return to original CPU) took 0.512882 sec TREE: Full tree construction for all particles. (presently allocated=162.324 MB) GRAVTREE: Tree construction done. took 1.45188 sec =93596.4 NTopnodes=21913 NTopleaves=19174 tree-build-scalability=0.76642 SUBFIND: SO iteration 1: need to repeat for 520535 halo centers. (took 0.0178705 sec) SUBFIND: SO iteration 2: need to repeat for 520535 halo centers. (took 0.0158496 sec) SUBFIND: SO iteration 3: need to repeat for 520535 halo centers. (took 0.0161715 sec) SUBFIND: SO iteration 4: need to repeat for 520535 halo centers. (took 0.0149649 sec) SUBFIND: SO iteration 5: need to repeat for 520535 halo centers. (took 0.0148651 sec) SUBFIND: SO iteration 6: need to repeat for 520535 halo centers. (took 0.0163972 sec) SUBFIND: SO iteration 7: need to repeat for 520535 halo centers. (took 0.01475 sec) SUBFIND: SO iteration 8: need to repeat for 520535 halo centers. (took 0.0149433 sec) SUBFIND: SO iteration 9: need to repeat for 520535 halo centers. (took 0.0153201 sec) SUBFIND: SO iteration 10: need to repeat for 520535 halo centers. (took 0.0147014 sec) SUBFIND: SO iteration 11: need to repeat for 520535 halo centers. (took 0.0146824 sec) SUBFIND: SO iteration 12: need to repeat for 520535 halo centers. (took 0.0148854 sec) SUBFIND: SO iteration 13: need to repeat for 520535 halo centers. (took 0.0146602 sec) SUBFIND: SO iteration 14: need to repeat for 520535 halo centers. (took 0.0148474 sec) SUBFIND: SO iteration 15: need to repeat for 520535 halo centers. (took 0.0147149 sec) SUBFIND: SO iteration 16: need to repeat for 5875 halo centers. (took 0.0155042 sec) SUBFIND: SO iteration 17: need to repeat for 52 halo centers. (took 0.000983452 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000158394 sec) SUBFIND: SO iteration 1: need to repeat for 520535 halo centers. (took 0.0146705 sec) SUBFIND: SO iteration 2: need to repeat for 520535 halo centers. (took 0.0141701 sec) SUBFIND: SO iteration 3: need to repeat for 520535 halo centers. (took 0.0147024 sec) SUBFIND: SO iteration 4: need to repeat for 520535 halo centers. (took 0.0145506 sec) SUBFIND: SO iteration 5: need to repeat for 520535 halo centers. (took 0.0145966 sec) SUBFIND: SO iteration 6: need to repeat for 520535 halo centers. (took 0.0146179 sec) SUBFIND: SO iteration 7: need to repeat for 520535 halo centers. (took 0.0145745 sec) SUBFIND: SO iteration 8: need to repeat for 520535 halo centers. (took 0.0147185 sec) SUBFIND: SO iteration 9: need to repeat for 520535 halo centers. (took 0.0145477 sec) SUBFIND: SO iteration 10: need to repeat for 520535 halo centers. (took 0.0145582 sec) SUBFIND: SO iteration 11: need to repeat for 520535 halo centers. (took 0.0146182 sec) SUBFIND: SO iteration 12: need to repeat for 520535 halo centers. (took 0.014559 sec) SUBFIND: SO iteration 13: need to repeat for 520535 halo centers. (took 0.0145938 sec) SUBFIND: SO iteration 14: need to repeat for 520535 halo centers. (took 0.0146077 sec) SUBFIND: SO iteration 15: need to repeat for 520535 halo centers. (took 0.0145674 sec) SUBFIND: SO iteration 16: need to repeat for 2905 halo centers. (took 0.014439 sec) SUBFIND: SO iteration 17: need to repeat for 18 halo centers. (took 0.000632854 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000141593 sec) SUBFIND: SO iteration 1: need to repeat for 520535 halo centers. (took 0.0146931 sec) SUBFIND: SO iteration 2: need to repeat for 520535 halo centers. (took 0.0158831 sec) SUBFIND: SO iteration 3: need to repeat for 520535 halo centers. (took 0.0152008 sec) SUBFIND: SO iteration 4: need to repeat for 520535 halo centers. (took 0.0148662 sec) SUBFIND: SO iteration 5: need to repeat for 520535 halo centers. (took 0.0146967 sec) SUBFIND: SO iteration 6: need to repeat for 520535 halo centers. (took 0.0146458 sec) SUBFIND: SO iteration 7: need to repeat for 520535 halo centers. (took 0.0154533 sec) SUBFIND: SO iteration 8: need to repeat for 520535 halo centers. (took 0.0147731 sec) SUBFIND: SO iteration 9: need to repeat for 520535 halo centers. (took 0.0149486 sec) SUBFIND: SO iteration 10: need to repeat for 520535 halo centers. (took 0.0151407 sec) SUBFIND: SO iteration 11: need to repeat for 520535 halo centers. (took 0.014629 sec) SUBFIND: SO iteration 12: need to repeat for 520535 halo centers. (took 0.0151097 sec) SUBFIND: SO iteration 13: need to repeat for 520535 halo centers. (took 0.0161125 sec) SUBFIND: SO iteration 14: need to repeat for 520535 halo centers. (took 0.0149309 sec) SUBFIND: SO iteration 15: need to repeat for 520535 halo centers. (took 0.0150043 sec) SUBFIND: SO iteration 16: need to repeat for 6061 halo centers. (took 0.0144971 sec) SUBFIND: SO iteration 17: need to repeat for 53 halo centers. (took 0.000993904 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000165865 sec) SUBFIND: SO iteration 1: need to repeat for 520535 halo centers. (took 0.0146921 sec) SUBFIND: SO iteration 2: need to repeat for 520535 halo centers. (took 0.0157847 sec) SUBFIND: SO iteration 3: need to repeat for 520535 halo centers. (took 0.0150578 sec) SUBFIND: SO iteration 4: need to repeat for 520535 halo centers. (took 0.0158033 sec) SUBFIND: SO iteration 5: need to repeat for 520535 halo centers. (took 0.0153885 sec) SUBFIND: SO iteration 6: need to repeat for 520535 halo centers. (took 0.0154287 sec) SUBFIND: SO iteration 7: need to repeat for 520535 halo centers. (took 0.015494 sec) SUBFIND: SO iteration 8: need to repeat for 520535 halo centers. (took 0.0154742 sec) SUBFIND: SO iteration 9: need to repeat for 520535 halo centers. (took 0.0154737 sec) SUBFIND: SO iteration 10: need to repeat for 520535 halo centers. (took 0.0154549 sec) SUBFIND: SO iteration 11: need to repeat for 520535 halo centers. (took 0.0157519 sec) SUBFIND: SO iteration 12: need to repeat for 520535 halo centers. (took 0.0154646 sec) SUBFIND: SO iteration 13: need to repeat for 520535 halo centers. (took 0.0159424 sec) SUBFIND: SO iteration 14: need to repeat for 520535 halo centers. (took 0.0153927 sec) SUBFIND: SO iteration 15: need to repeat for 520535 halo centers. (took 0.0158807 sec) SUBFIND: SO iteration 16: need to repeat for 268351 halo centers. (took 0.0156515 sec) SUBFIND: SO iteration 17: need to repeat for 5879 halo centers. (took 0.0100898 sec) SUBFIND: SO iteration 18: need to repeat for 180 halo centers. (took 0.000891488 sec) SUBFIND: determining spherical overdensity masses took 0.983705 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0760174 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.47194 sec, total size 207.581 MB, corresponds to effective I/O rate of 141.025 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.47324 sec SUBFIND: Finished with SUBFIND. (total time=58.0531 sec) SUBFIND: Total number of subhalos with at least 20 particles: 583564 SUBFIND: Largest subhalo has 260 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133997302 FOF: preparing output order of particles took 1.39616 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.10453 sec, total size 5352.84 MB, corresponds to effective I/O rate of 660.474 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 420 (rank 420 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 441 (rank 441 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 432 (rank 432 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.