TACC: Starting up job 4242141
TACC: Starting parallel tasks...
Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks.
We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node).
___ __ ____ ___ ____ ____ __
/ __) /__\ ( _ \ / __)( ___)(_ _)___ /. |
( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _)
\___/(__)(__)(____/ \___/(____) (__) (_)
This is Gadget, version 4.0.
Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200
Code was compiled with the following compiler and flags:
mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc
Code was compiled with the following settings:
DOUBLEPRECISION=1
FOF
FOF_GROUP_MIN_LEN=32
FOF_LINKLENGTH=0.2
FOF_PRIMARY_LINK_TYPES=2
FOF_SECONDARY_LINK_TYPES=1+16+32
GADGET2_HEADER
IDS_64BIT
NTYPES=6
PERIODIC
PMGRID=128
SELFGRAVITY
SUBFIND
Running on 432 MPI tasks.
BEGRUN: Size of particle structure 136 [bytes]
BEGRUN: Size of sph particle structure 192 [bytes]
BEGRUN: Size of gravity tree node 104 [bytes]
BEGRUN: Size of neighbour tree node 192 [bytes]
BEGRUN: Size of subfind auxiliary data 104 [bytes]
-------------------------------------------------------------------------------------------------------------------------
AvailMem: Largest = 186453.38 Mb (on task= 54), Smallest = 186413.43 Mb (on task= 0), Average = 186430.54 Mb
Total Mem: Largest = 191515.35 Mb (on task= 351), Smallest = 191515.33 Mb (on task= 0), Average = 191515.33 Mb
Committed_AS: Largest = 5101.91 Mb (on task= 0), Smallest = 5061.95 Mb (on task= 54), Average = 5084.80 Mb
SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb
SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb
AllocMem: Largest = 5101.91 Mb (on task= 0), Smallest = 5061.95 Mb (on task= 54), Average = 5084.80 Mb
avail /dev/shm: Largest = 95321.54 Mb (on task= 351), Smallest = 95321.47 Mb (on task= 40), Average = 95321.51 Mb
-------------------------------------------------------------------------------------------------------------------------
Task=0 has the maximum commited memory and is host: c160-023.frontera.tacc.utexas.edu
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Obtaining parameters from file 'param.txt':
InitCondFile lcdm_gas_littleendian.dat
OutputDir output
SnapshotFileBase snap
OutputListFilename outputs_lcdm_gas.txt
ICFormat 3
SnapFormat 3
TimeLimitCPU 180000
CpuTimeBetRestartFile 7200
MaxMemSize 3000
TimeBegin 0.0909091
TimeMax 1
ComovingIntegrationOn 1
Omega0 0.2814
OmegaLambda 0.7186
OmegaBaryon 0.0464
HubbleParam 0.697
Hubble 0.1
BoxSize 400000
OutputListOn 0
TimeBetSnapshot 1.83842
TimeOfFirstSnapshot 0.047619
TimeBetStatistics 0.05
NumFilesPerSnapshot 1
MaxFilesWithConcurrentIO 1
ErrTolIntAccuracy 0.012
CourantFac 0.15
MaxSizeTimestep 0.025
MinSizeTimestep 0
TypeOfOpeningCriterion 1
ErrTolTheta 0.9
ErrTolThetaMax 1
ErrTolForceAcc 0.0025
TopNodeFactor 2.5
ActivePartFracForNewDomainDecomp 0.01
DesNumNgb 64
MaxNumNgbDeviation 3
UnitLength_in_cm 3.08568e+21
UnitMass_in_g 1.989e+43
UnitVelocity_in_cm_per_s 100000
GravityConstantInternal 0
DesLinkNgb 20
SofteningComovingClass0 1.5
SofteningComovingClass1 1.5
SofteningComovingClass2 1.5
SofteningComovingClass3 1.5
SofteningComovingClass4 1.5
SofteningComovingClass5 1.5
SofteningMaxPhysClass0 1.5
SofteningMaxPhysClass1 1.5
SofteningMaxPhysClass2 1.5
SofteningMaxPhysClass3 1.5
SofteningMaxPhysClass4 1.5
SofteningMaxPhysClass5 1.5
SofteningClassOfPartType0 0
SofteningClassOfPartType1 0
SofteningClassOfPartType2 0
SofteningClassOfPartType3 0
SofteningClassOfPartType4 0
SofteningClassOfPartType5 0
ArtBulkViscConst 1
MinEgySpec 0
InitGasTemp 1000
MALLOC: Allocation of shared memory took 16.7522 sec
BEGRUN: Hubble (internal units) = 0.1
BEGRUN: h = 0.697
BEGRUN: G (internal units) = 43018.7
BEGRUN: UnitMass_in_g = 1.989e+43
BEGRUN: UnitLenth_in_cm = 3.08568e+21
BEGRUN: UnitTime_in_s = 3.08568e+16
BEGRUN: UnitVelocity_in_cm_per_s = 100000
BEGRUN: UnitDensity_in_cgs = 6.76991e-22
BEGRUN: UnitEnergy_in_cgs = 1.989e+53
READIC: filenr=0, 'output/snap_208.hdf5' contains:
READIC: Type 0 (gas): 65544736 (tot= 65544736) masstab= 0
READIC: Type 1: 68109521 (tot= 68109521) masstab= 0
READIC: Type 2: 0 (tot= 0) masstab= 0
READIC: Type 3: 0 (tot= 0) masstab= 0
READIC: Type 4: 343315 (tot= 343315) masstab= 0
READIC: Type 5: 0 (tot= 0) masstab= 0
READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431.
READIC: reading block 0 (Coordinates)...
READIC: reading block 1 (Velocities)...
READIC: reading block 2 (ParticleIDs)...
READIC: reading block 3 (Masses)...
READIC: reading block 4 (InternalEnergy)...
READIC: reading block 5 (Density)...
Dataset Density not present for particle type 0, using zero.
READIC: reading block 6 (SmoothingLength)...
Dataset SmoothingLength not present for particle type 0, using zero.
READIC: reading done. Took 4.50365 sec, total size 6383.96 MB, corresponds to effective I/O rate of 1417.51 MB/sec
READIC: Total number of particles : 133997572
INIT: Testing ID uniqueness...
INIT: success. took=0.0734945 sec
DOMAIN: Begin domain decomposition (sync-point 0).
DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4
DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104
DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352
DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576
DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488
DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034
DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145
DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988
DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585
DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836
DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287
DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373
DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385
DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423
DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499
DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487
DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333
DOMAIN: NTopleaves=19188, determination of top-level tree involved 5 iterations and took 0.633691 sec
DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16
DOMAIN: total_cost=4 total_load=2
DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11905|1.11973
DOMAIN: combining multiple-domains took 0.0133978 sec
DOMAIN: exchange of 68452836 particles
DOMAIN: particle exchange done. (took 0.329661 sec)
DOMAIN: domain decomposition done. (took in total 0.987769 sec)
PEANO: Begin Peano-Hilbert order...
PEANO: done, took 0.0745477 sec.
INIT: Converting u -> entropy All.cf_a3inv=512
FOF: Begin to compute FoF group catalogue... (presently allocated=173.759 MB)
FOF: Comoving linking length: 11.3647
FOFTREE: Ngb-tree construction done. took 0.155916 sec <numnodes>=62824.2 NTopnodes=21929 NTopleaves=19188
FOF: Start linking particles (presently allocated=191.919 MB)
FOF: linking of small cells took 0.00189282 sec
FOF: local links done (took 0.184359 sec, avg-work=0.162758, imbalance=1.12187).
FOF: Marked=148696 out of the 68109521 primaries which are linked
FOF: begin linking across processors (presently allocated=193.74 MB)
FOF: have done 7947 cross links (processed 148696, took 0.00614873 sec)
FOF: have done 2135 cross links (processed 73801, took 0.00514871 sec)
FOF: have done 386 cross links (processed 10729, took 0.00482456 sec)
FOF: have done 66 cross links (processed 1679, took 0.00459496 sec)
FOF: have done 19 cross links (processed 468, took 0.00451152 sec)
FOF: have done 1 cross links (processed 72, took 0.0044242 sec)
FOF: have done 0 cross links (processed 2, took 0.00440336 sec)
FOF: Local groups found.
FOF: primary group finding took = 0.230537 sec
FOF: Start finding nearest dm-particle (presently allocated=191.919 MB)
FOF: fof-nearest iteration 1: need to repeat for 63065166 particles. (took = 0.11048 sec)
FOF: fof-nearest iteration 2: need to repeat for 50894998 particles. (took = 0.129198 sec)
FOF: fof-nearest iteration 3: need to repeat for 26303041 particles. (took = 0.137494 sec)
FOF: fof-nearest iteration 4: need to repeat for 7357888 particles. (took = 0.0906124 sec)
FOF: fof-nearest iteration 5: need to repeat for 877323 particles. (took = 0.0320075 sec)
FOF: fof-nearest iteration 6: need to repeat for 23653 particles. (took = 0.00723245 sec)
FOF: done finding nearest dm-particle
FOF: attaching gas and star particles to nearest dm particles took = 0.515352 sec
FOF: compiling local group data and catalogue took = 0.0258972 sec
FOF: Total number of FOF groups with at least 32 particles: 409116
FOF: Largest FOF group has 330 particles.
FOF: Total number of particles in FOF groups: 133997572
FOF: group properties are now allocated.. (presently allocated=179.156 MB)
FOF: computation of group properties took = 0.00798879 sec
FOF: start assigning group numbers
FOF: Assigning of group numbers took = 0.0848953 sec
FOF: Finished computing FoF groups. Complete work took 1.07288 sec (presently allocated=174.114 MB)
SUBFIND: We now execute a parallel version of SUBFIND.
TREE: Full tree construction for all particles. (presently allocated=179.115 MB)
GRAVTREE: Tree construction done. took 0.668696 sec <numnodes>=90738.1 NTopnodes=21929 NTopleaves=19188 tree-build-scalability=0.758886
SUBFIND: finding total densities around all particles
SUBFIND: ngb iteration 1: need to repeat for 133997568 particles. (took 1.22037 sec)
SUBFIND: ngb iteration 2: need to repeat for 133997565 particles. (took 1.08287 sec)
SUBFIND: ngb iteration 3: need to repeat for 133997549 particles. (took 1.01709 sec)
SUBFIND: ngb iteration 4: need to repeat for 133997516 particles. (took 0.996356 sec)
SUBFIND: ngb iteration 5: need to repeat for 133997415 particles. (took 1.00175 sec)
SUBFIND: ngb iteration 6: need to repeat for 133997151 particles. (took 1.02266 sec)
SUBFIND: ngb iteration 7: need to repeat for 133996612 particles. (took 1.0548 sec)
SUBFIND: ngb iteration 8: need to repeat for 133995229 particles. (took 1.10794 sec)
SUBFIND: ngb iteration 9: need to repeat for 133928419 particles. (took 1.17517 sec)
SUBFIND: ngb iteration 10: need to repeat for 132438690 particles. (took 1.25532 sec)
SUBFIND: ngb iteration 11: need to repeat for 127125220 particles. (took 1.3239 sec)
SUBFIND: ngb iteration 12: need to repeat for 119360644 particles. (took 1.34258 sec)
SUBFIND: ngb iteration 13: need to repeat for 109336143 particles. (took 1.32701 sec)
SUBFIND: ngb iteration 14: need to repeat for 98836933 particles. (took 1.28242 sec)
SUBFIND: ngb iteration 15: need to repeat for 89560690 particles. (took 1.21805 sec)
SUBFIND: ngb iteration 16: need to repeat for 81407513 particles. (took 1.14825 sec)
SUBFIND: ngb iteration 17: need to repeat for 73831390 particles. (took 1.0702 sec)
SUBFIND: ngb iteration 18: need to repeat for 66274152 particles. (took 0.983224 sec)
SUBFIND: ngb iteration 19: need to repeat for 58200200 particles. (took 0.893086 sec)
SUBFIND: ngb iteration 20: need to repeat for 48957789 particles. (took 0.789748 sec)
SUBFIND: ngb iteration 21: need to repeat for 38085982 particles. (took 0.671963 sec)
SUBFIND: ngb iteration 22: need to repeat for 26370375 particles. (took 0.536896 sec)
SUBFIND: ngb iteration 23: need to repeat for 15453063 particles. (took 0.389112 sec)
SUBFIND: ngb iteration 24: need to repeat for 7285767 particles. (took 0.246526 sec)
SUBFIND: ngb iteration 25: need to repeat for 2664072 particles. (took 0.13833 sec)
SUBFIND: ngb iteration 26: need to repeat for 702230 particles. (took 0.063012 sec)
SUBFIND: ngb iteration 27: need to repeat for 120858 particles. (took 0.0216555 sec)
SUBFIND: ngb iteration 28: need to repeat for 12943 particles. (took 0.00514964 sec)
SUBFIND: ngb iteration 29: need to repeat for 1366 particles. (took 0.00137378 sec)
SUBFIND: ngb iteration 30: need to repeat for 573 particles. (took 0.00121616 sec)
SUBFIND: ngb iteration 31: need to repeat for 549 particles. (took 0.0012332 sec)
SUBFIND: ngb iteration 32: need to repeat for 549 particles. (took 0.00222727 sec)
SUBFIND: ngb iteration 33: need to repeat for 549 particles. (took 0.00221509 sec)
SUBFIND: ngb iteration 34: need to repeat for 549 particles. (took 0.00223099 sec)
SUBFIND: ngb iteration 35: need to repeat for 516 particles. (took 0.00552805 sec)
SUBFIND: ngb iteration 36: need to repeat for 490 particles. (took 0.0054404 sec)
SUBFIND: ngb iteration 37: need to repeat for 392 particles. (took 0.00262366 sec)
SUBFIND: ngb iteration 38: need to repeat for 277 particles. (took 0.00150166 sec)
SUBFIND: ngb iteration 39: need to repeat for 271 particles. (took 0.0015782 sec)
SUBFIND: ngb iteration 40: need to repeat for 247 particles. (took 0.00187178 sec)
SUBFIND: ngb iteration 41: need to repeat for 238 particles. (took 0.00168422 sec)
SUBFIND: ngb iteration 42: need to repeat for 206 particles. (took 0.00155331 sec)
SUBFIND: ngb iteration 43: need to repeat for 125 particles. (took 0.00131977 sec)
SUBFIND: iteration to correct primary neighbor count and density estimate took 24.4282 sec
SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0
SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0
SUBFIND: (The adopted size-limit for the collective algorithm was 133997572 particles, for threshold size factor 0.6)
SUBFIND: The other 409116 FOF halos are treated in parallel with serial code
SUBFIND: subfind_distribute_groups() took 0.00218708 sec
SUBFIND: particle balance=1.11824
SUBFIND: subfind_exchange() took 0.456484 sec
SUBFIND: particle balance for processing=1.00103
SUBFIND: subdomain decomposition took 0.104629 sec
SUBFIND: serial subfind subdomain decomposition took 0.103348 sec
SUBFIND: subfind_hbt_single_group() processing for Ngroups=948 took 27.0798 sec
SUBFIND: root-task=0: Serial processing of halo 0 took 27.3355
SUBFIND: Processing overall took (total time=28.1179 sec)
SUBFIND: 0 out of 92406 decisions, fraction 0, where influenced by previous subhalo size
ALLOCATE: Changing to MaxPart = 516966
ALLOCATE: Changing to MaxPartSph = 252873
SUBFIND: subfind_exchange() (for return to original CPU) took 0.52712 sec
TREE: Full tree construction for all particles. (presently allocated=161.543 MB)
GRAVTREE: Tree construction done. took 1.48578 sec <numnodes>=90738.1 NTopnodes=21929 NTopleaves=19188 tree-build-scalability=0.758886
SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.0164678 sec)
SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0163445 sec)
SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0143815 sec)
SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0182706 sec)
SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0138771 sec)
SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0137429 sec)
SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0137247 sec)
SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.0137032 sec)
SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.015751 sec)
SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.0137182 sec)
SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0136471 sec)
SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0136541 sec)
SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.014105 sec)
SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.0138707 sec)
SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0142306 sec)
SUBFIND: SO iteration 16: need to repeat for 3422 halo centers. (took 0.0135535 sec)
SUBFIND: SO iteration 17: need to repeat for 24 halo centers. (took 0.000662958 sec)
SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.0138017 sec)
SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0130472 sec)
SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0136131 sec)
SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0134834 sec)
SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0136184 sec)
SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0139225 sec)
SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0140156 sec)
SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.0135238 sec)
SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.0135345 sec)
SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.0137022 sec)
SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0141104 sec)
SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0138959 sec)
SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.0135397 sec)
SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.013772 sec)
SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0135385 sec)
SUBFIND: SO iteration 16: need to repeat for 1667 halo centers. (took 0.0133418 sec)
SUBFIND: SO iteration 17: need to repeat for 9 halo centers. (took 0.00054994 sec)
SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.0142486 sec)
SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0153004 sec)
SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0154725 sec)
SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0138447 sec)
SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0137585 sec)
SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0136203 sec)
SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0136497 sec)
SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.0136606 sec)
SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.0137305 sec)
SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.01451 sec)
SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0136673 sec)
SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0137809 sec)
SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.0152987 sec)
SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.0136757 sec)
SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0137928 sec)
SUBFIND: SO iteration 16: need to repeat for 3539 halo centers. (took 0.0185745 sec)
SUBFIND: SO iteration 17: need to repeat for 25 halo centers. (took 0.000675865 sec)
SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.013578 sec)
SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0159317 sec)
SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0139472 sec)
SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0145037 sec)
SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0144209 sec)
SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0149884 sec)
SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0204258 sec)
SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.014389 sec)
SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.0145701 sec)
SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.0144367 sec)
SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0147851 sec)
SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0144545 sec)
SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.0144066 sec)
SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.0144364 sec)
SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0145291 sec)
SUBFIND: SO iteration 16: need to repeat for 213271 halo centers. (took 0.0145384 sec)
SUBFIND: SO iteration 17: need to repeat for 3132 halo centers. (took 0.00971695 sec)
SUBFIND: SO iteration 18: need to repeat for 111 halo centers. (took 0.000642998 sec)
SUBFIND: SO iteration 19: need to repeat for 10 halo centers. (took 0.00015725 sec)
SUBFIND: determining spherical overdensity masses took 0.935415 sec
SUBFIND: assembled and ordered groups and subhalos (took 0.0747817 sec)
FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1)
FOF/SUBFIND: writing group catalogue block 0 (GroupLen)...
FOF/SUBFIND: writing group catalogue block 1 (GroupMass)...
FOF/SUBFIND: writing group catalogue block 2 (GroupPos)...
FOF/SUBFIND: writing group catalogue block 3 (GroupVel)...
FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)...
FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)...
FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)...
FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)...
FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)...
FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)...
FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)...
FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)...
FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)...
FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)...
FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)...
FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)...
FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)...
FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)...
FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)...
FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)...
FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)...
FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)...
FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)...
FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)...
FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)...
FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)...
FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)...
FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)...
FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)...
FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)...
FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)...
FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)...
FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)...
FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)...
FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)...
FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)...
FOF/SUBFIND: Group catalogues saved. took = 1.43223 sec, total size 171.939 MB, corresponds to effective I/O rate of 120.05 MB/sec
SUBFIND: Subgroup catalogues saved. took = 1.43316 sec
SUBFIND: Finished with SUBFIND. (total time=58.2016 sec)
SUBFIND: Total number of subhalos with at least 20 particles: 501329
SUBFIND: Largest subhalo has 330 particles/cells.
SUBFIND: Total number of particles/cells in subhalos: 133997572
FOF: preparing output order of particles took 1.37556 sec
SNAPSHOT: writing snapshot file #208 @ time 0.125 ...
SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1)
SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5'
SNAPSHOT: writing snapshot block 0 (Coordinates)...
SNAPSHOT: writing snapshot block 1 (Velocities)...
SNAPSHOT: writing snapshot block 2 (ParticleIDs)...
SNAPSHOT: writing snapshot block 3 (Masses)...
SNAPSHOT: writing snapshot block 4 (InternalEnergy)...
SNAPSHOT: writing snapshot block 5 (Density)...
SNAPSHOT: writing snapshot block 6 (SmoothingLength)...
SNAPSHOT: done with writing snapshot. Took 7.47414 sec, total size 5350.54 MB, corresponds to effective I/O rate of 715.874 MB/sec
endrun called, calling MPI_Finalize()
bye!
Abort(806969615) on node 89 (rank 89 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack:
PMPI_Finalize(214)...............: MPI_Finalize failed
PMPI_Finalize(159)...............:
MPID_Finalize(1288)..............:
MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy)
Abort(806969615) on node 101 (rank 101 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack:
PMPI_Finalize(214)...............: MPI_Finalize failed
PMPI_Finalize(159)...............:
MPID_Finalize(1288)..............:
MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy)
Abort(806969615) on node 86 (rank 86 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack:
PMPI_Finalize(214)...............: MPI_Finalize failed
PMPI_Finalize(159)...............:
MPID_Finalize(1288)..............:
MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy)
TACC: MPI job exited with code: 15
TACC: Shutdown complete. Exiting.