TACC: Starting up job 4242141 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 16 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 432 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186453.38 Mb (on task= 54), Smallest = 186413.43 Mb (on task= 0), Average = 186430.54 Mb Total Mem: Largest = 191515.35 Mb (on task= 351), Smallest = 191515.33 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5101.91 Mb (on task= 0), Smallest = 5061.95 Mb (on task= 54), Average = 5084.80 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5101.91 Mb (on task= 0), Smallest = 5061.95 Mb (on task= 54), Average = 5084.80 Mb avail /dev/shm: Largest = 95321.54 Mb (on task= 351), Smallest = 95321.47 Mb (on task= 40), Average = 95321.51 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c160-023.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.7522 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_208.hdf5' contains: READIC: Type 0 (gas): 65544736 (tot= 65544736) masstab= 0 READIC: Type 1: 68109521 (tot= 68109521) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 343315 (tot= 343315) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_208.hdf5' on task=0 and distribute it to 0 to 431. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.50365 sec, total size 6383.96 MB, corresponds to effective I/O rate of 1417.51 MB/sec READIC: Total number of particles : 133997572 INIT: Testing ID uniqueness... INIT: success. took=0.0734945 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=19188, determination of top-level tree involved 5 iterations and took 0.633691 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=432, nnodes=16 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=98, reaching maximum imbalance of 1.11905|1.11973 DOMAIN: combining multiple-domains took 0.0133978 sec DOMAIN: exchange of 68452836 particles DOMAIN: particle exchange done. (took 0.329661 sec) DOMAIN: domain decomposition done. (took in total 0.987769 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0745477 sec. INIT: Converting u -> entropy All.cf_a3inv=512 FOF: Begin to compute FoF group catalogue... (presently allocated=173.759 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.155916 sec =62824.2 NTopnodes=21929 NTopleaves=19188 FOF: Start linking particles (presently allocated=191.919 MB) FOF: linking of small cells took 0.00189282 sec FOF: local links done (took 0.184359 sec, avg-work=0.162758, imbalance=1.12187). FOF: Marked=148696 out of the 68109521 primaries which are linked FOF: begin linking across processors (presently allocated=193.74 MB) FOF: have done 7947 cross links (processed 148696, took 0.00614873 sec) FOF: have done 2135 cross links (processed 73801, took 0.00514871 sec) FOF: have done 386 cross links (processed 10729, took 0.00482456 sec) FOF: have done 66 cross links (processed 1679, took 0.00459496 sec) FOF: have done 19 cross links (processed 468, took 0.00451152 sec) FOF: have done 1 cross links (processed 72, took 0.0044242 sec) FOF: have done 0 cross links (processed 2, took 0.00440336 sec) FOF: Local groups found. FOF: primary group finding took = 0.230537 sec FOF: Start finding nearest dm-particle (presently allocated=191.919 MB) FOF: fof-nearest iteration 1: need to repeat for 63065166 particles. (took = 0.11048 sec) FOF: fof-nearest iteration 2: need to repeat for 50894998 particles. (took = 0.129198 sec) FOF: fof-nearest iteration 3: need to repeat for 26303041 particles. (took = 0.137494 sec) FOF: fof-nearest iteration 4: need to repeat for 7357888 particles. (took = 0.0906124 sec) FOF: fof-nearest iteration 5: need to repeat for 877323 particles. (took = 0.0320075 sec) FOF: fof-nearest iteration 6: need to repeat for 23653 particles. (took = 0.00723245 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.515352 sec FOF: compiling local group data and catalogue took = 0.0258972 sec FOF: Total number of FOF groups with at least 32 particles: 409116 FOF: Largest FOF group has 330 particles. FOF: Total number of particles in FOF groups: 133997572 FOF: group properties are now allocated.. (presently allocated=179.156 MB) FOF: computation of group properties took = 0.00798879 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.0848953 sec FOF: Finished computing FoF groups. Complete work took 1.07288 sec (presently allocated=174.114 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=179.115 MB) GRAVTREE: Tree construction done. took 0.668696 sec =90738.1 NTopnodes=21929 NTopleaves=19188 tree-build-scalability=0.758886 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133997568 particles. (took 1.22037 sec) SUBFIND: ngb iteration 2: need to repeat for 133997565 particles. (took 1.08287 sec) SUBFIND: ngb iteration 3: need to repeat for 133997549 particles. (took 1.01709 sec) SUBFIND: ngb iteration 4: need to repeat for 133997516 particles. (took 0.996356 sec) SUBFIND: ngb iteration 5: need to repeat for 133997415 particles. (took 1.00175 sec) SUBFIND: ngb iteration 6: need to repeat for 133997151 particles. (took 1.02266 sec) SUBFIND: ngb iteration 7: need to repeat for 133996612 particles. (took 1.0548 sec) SUBFIND: ngb iteration 8: need to repeat for 133995229 particles. (took 1.10794 sec) SUBFIND: ngb iteration 9: need to repeat for 133928419 particles. (took 1.17517 sec) SUBFIND: ngb iteration 10: need to repeat for 132438690 particles. (took 1.25532 sec) SUBFIND: ngb iteration 11: need to repeat for 127125220 particles. (took 1.3239 sec) SUBFIND: ngb iteration 12: need to repeat for 119360644 particles. (took 1.34258 sec) SUBFIND: ngb iteration 13: need to repeat for 109336143 particles. (took 1.32701 sec) SUBFIND: ngb iteration 14: need to repeat for 98836933 particles. (took 1.28242 sec) SUBFIND: ngb iteration 15: need to repeat for 89560690 particles. (took 1.21805 sec) SUBFIND: ngb iteration 16: need to repeat for 81407513 particles. (took 1.14825 sec) SUBFIND: ngb iteration 17: need to repeat for 73831390 particles. (took 1.0702 sec) SUBFIND: ngb iteration 18: need to repeat for 66274152 particles. (took 0.983224 sec) SUBFIND: ngb iteration 19: need to repeat for 58200200 particles. (took 0.893086 sec) SUBFIND: ngb iteration 20: need to repeat for 48957789 particles. (took 0.789748 sec) SUBFIND: ngb iteration 21: need to repeat for 38085982 particles. (took 0.671963 sec) SUBFIND: ngb iteration 22: need to repeat for 26370375 particles. (took 0.536896 sec) SUBFIND: ngb iteration 23: need to repeat for 15453063 particles. (took 0.389112 sec) SUBFIND: ngb iteration 24: need to repeat for 7285767 particles. (took 0.246526 sec) SUBFIND: ngb iteration 25: need to repeat for 2664072 particles. (took 0.13833 sec) SUBFIND: ngb iteration 26: need to repeat for 702230 particles. (took 0.063012 sec) SUBFIND: ngb iteration 27: need to repeat for 120858 particles. (took 0.0216555 sec) SUBFIND: ngb iteration 28: need to repeat for 12943 particles. (took 0.00514964 sec) SUBFIND: ngb iteration 29: need to repeat for 1366 particles. (took 0.00137378 sec) SUBFIND: ngb iteration 30: need to repeat for 573 particles. (took 0.00121616 sec) SUBFIND: ngb iteration 31: need to repeat for 549 particles. (took 0.0012332 sec) SUBFIND: ngb iteration 32: need to repeat for 549 particles. (took 0.00222727 sec) SUBFIND: ngb iteration 33: need to repeat for 549 particles. (took 0.00221509 sec) SUBFIND: ngb iteration 34: need to repeat for 549 particles. (took 0.00223099 sec) SUBFIND: ngb iteration 35: need to repeat for 516 particles. (took 0.00552805 sec) SUBFIND: ngb iteration 36: need to repeat for 490 particles. (took 0.0054404 sec) SUBFIND: ngb iteration 37: need to repeat for 392 particles. (took 0.00262366 sec) SUBFIND: ngb iteration 38: need to repeat for 277 particles. (took 0.00150166 sec) SUBFIND: ngb iteration 39: need to repeat for 271 particles. (took 0.0015782 sec) SUBFIND: ngb iteration 40: need to repeat for 247 particles. (took 0.00187178 sec) SUBFIND: ngb iteration 41: need to repeat for 238 particles. (took 0.00168422 sec) SUBFIND: ngb iteration 42: need to repeat for 206 particles. (took 0.00155331 sec) SUBFIND: ngb iteration 43: need to repeat for 125 particles. (took 0.00131977 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 24.4282 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133997572 particles, for threshold size factor 0.6) SUBFIND: The other 409116 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00218708 sec SUBFIND: particle balance=1.11824 SUBFIND: subfind_exchange() took 0.456484 sec SUBFIND: particle balance for processing=1.00103 SUBFIND: subdomain decomposition took 0.104629 sec SUBFIND: serial subfind subdomain decomposition took 0.103348 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=948 took 27.0798 sec SUBFIND: root-task=0: Serial processing of halo 0 took 27.3355 SUBFIND: Processing overall took (total time=28.1179 sec) SUBFIND: 0 out of 92406 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 516966 ALLOCATE: Changing to MaxPartSph = 252873 SUBFIND: subfind_exchange() (for return to original CPU) took 0.52712 sec TREE: Full tree construction for all particles. (presently allocated=161.543 MB) GRAVTREE: Tree construction done. took 1.48578 sec =90738.1 NTopnodes=21929 NTopleaves=19188 tree-build-scalability=0.758886 SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.0164678 sec) SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0163445 sec) SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0143815 sec) SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0182706 sec) SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0138771 sec) SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0137429 sec) SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0137247 sec) SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.0137032 sec) SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.015751 sec) SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.0137182 sec) SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0136471 sec) SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0136541 sec) SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.014105 sec) SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.0138707 sec) SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0142306 sec) SUBFIND: SO iteration 16: need to repeat for 3422 halo centers. (took 0.0135535 sec) SUBFIND: SO iteration 17: need to repeat for 24 halo centers. (took 0.000662958 sec) SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.0138017 sec) SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0130472 sec) SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0136131 sec) SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0134834 sec) SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0136184 sec) SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0139225 sec) SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0140156 sec) SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.0135238 sec) SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.0135345 sec) SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.0137022 sec) SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0141104 sec) SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0138959 sec) SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.0135397 sec) SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.013772 sec) SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0135385 sec) SUBFIND: SO iteration 16: need to repeat for 1667 halo centers. (took 0.0133418 sec) SUBFIND: SO iteration 17: need to repeat for 9 halo centers. (took 0.00054994 sec) SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.0142486 sec) SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0153004 sec) SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0154725 sec) SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0138447 sec) SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0137585 sec) SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0136203 sec) SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0136497 sec) SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.0136606 sec) SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.0137305 sec) SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.01451 sec) SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0136673 sec) SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0137809 sec) SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.0152987 sec) SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.0136757 sec) SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0137928 sec) SUBFIND: SO iteration 16: need to repeat for 3539 halo centers. (took 0.0185745 sec) SUBFIND: SO iteration 17: need to repeat for 25 halo centers. (took 0.000675865 sec) SUBFIND: SO iteration 1: need to repeat for 409116 halo centers. (took 0.013578 sec) SUBFIND: SO iteration 2: need to repeat for 409116 halo centers. (took 0.0159317 sec) SUBFIND: SO iteration 3: need to repeat for 409116 halo centers. (took 0.0139472 sec) SUBFIND: SO iteration 4: need to repeat for 409116 halo centers. (took 0.0145037 sec) SUBFIND: SO iteration 5: need to repeat for 409116 halo centers. (took 0.0144209 sec) SUBFIND: SO iteration 6: need to repeat for 409116 halo centers. (took 0.0149884 sec) SUBFIND: SO iteration 7: need to repeat for 409116 halo centers. (took 0.0204258 sec) SUBFIND: SO iteration 8: need to repeat for 409116 halo centers. (took 0.014389 sec) SUBFIND: SO iteration 9: need to repeat for 409116 halo centers. (took 0.0145701 sec) SUBFIND: SO iteration 10: need to repeat for 409116 halo centers. (took 0.0144367 sec) SUBFIND: SO iteration 11: need to repeat for 409116 halo centers. (took 0.0147851 sec) SUBFIND: SO iteration 12: need to repeat for 409116 halo centers. (took 0.0144545 sec) SUBFIND: SO iteration 13: need to repeat for 409116 halo centers. (took 0.0144066 sec) SUBFIND: SO iteration 14: need to repeat for 409116 halo centers. (took 0.0144364 sec) SUBFIND: SO iteration 15: need to repeat for 409116 halo centers. (took 0.0145291 sec) SUBFIND: SO iteration 16: need to repeat for 213271 halo centers. (took 0.0145384 sec) SUBFIND: SO iteration 17: need to repeat for 3132 halo centers. (took 0.00971695 sec) SUBFIND: SO iteration 18: need to repeat for 111 halo centers. (took 0.000642998 sec) SUBFIND: SO iteration 19: need to repeat for 10 halo centers. (took 0.00015725 sec) SUBFIND: determining spherical overdensity masses took 0.935415 sec SUBFIND: assembled and ordered groups and subhalos (took 0.0747817 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_208' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 1.43223 sec, total size 171.939 MB, corresponds to effective I/O rate of 120.05 MB/sec SUBFIND: Subgroup catalogues saved. took = 1.43316 sec SUBFIND: Finished with SUBFIND. (total time=58.2016 sec) SUBFIND: Total number of subhalos with at least 20 particles: 501329 SUBFIND: Largest subhalo has 330 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133997572 FOF: preparing output order of particles took 1.37556 sec SNAPSHOT: writing snapshot file #208 @ time 0.125 ... SNAPSHOT: writing snapshot file: 'output/snap_208' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_208.hdf5' to 'output/bak-snap_208.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.47414 sec, total size 5350.54 MB, corresponds to effective I/O rate of 715.874 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 89 (rank 89 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 101 (rank 101 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 86 (rank 86 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.