TACC: Starting up job 4245022 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186316.26 Mb (on task= 540), Smallest = 186194.38 Mb (on task= 0), Average = 186281.16 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5192.51 Mb (on task= 0), Smallest = 5070.63 Mb (on task= 540), Average = 5105.73 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5192.51 Mb (on task= 0), Smallest = 5070.63 Mb (on task= 540), Average = 5105.73 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 365), Average = 95257.24 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-006.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.5916 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65416818 (tot= 65416818) masstab= 0 READIC: Type 1: 68368342 (tot= 68368342) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 43745 (tot= 43745) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 6.92883 sec, total size 6375.75 MB, corresponds to effective I/O rate of 920.177 MB/sec READIC: Total number of particles : 133828905 INIT: Testing ID uniqueness... INIT: success. took=0.0617641 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=29366, determination of top-level tree involved 5 iterations and took 0.464662 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=168 for nextra=117, reaching maximum imbalance of 1.10681|1.10688 DOMAIN: combining multiple-domains took 0.0160275 sec DOMAIN: exchange of 68412087 particles DOMAIN: particle exchange done. (took 0.326862 sec) DOMAIN: domain decomposition done. (took in total 0.815086 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0469508 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=115.95 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.108422 sec =69739.1 NTopnodes=33561 NTopleaves=29366 FOF: Start linking particles (presently allocated=129.095 MB) FOF: linking of small cells took 0.0012911 sec FOF: local links done (took 0.102218 sec, avg-work=0.0908597, imbalance=1.11427). FOF: Marked=164170 out of the 68368342 primaries which are linked FOF: begin linking across processors (presently allocated=130.391 MB) FOF: have done 11729 cross links (processed 164170, took 0.00467369 sec) FOF: have done 2823 cross links (processed 82834, took 0.00381629 sec) FOF: have done 488 cross links (processed 12683, took 0.00327841 sec) FOF: have done 108 cross links (processed 2145, took 0.00308785 sec) FOF: have done 22 cross links (processed 511, took 0.00305924 sec) FOF: have done 2 cross links (processed 74, took 0.00302609 sec) FOF: have done 0 cross links (processed 7, took 0.00299244 sec) FOF: Local groups found. FOF: primary group finding took = 0.13364 sec FOF: Start finding nearest dm-particle (presently allocated=129.095 MB) FOF: fof-nearest iteration 1: need to repeat for 63553156 particles. (took = 0.067052 sec) FOF: fof-nearest iteration 2: need to repeat for 54404529 particles. (took = 0.0758516 sec) FOF: fof-nearest iteration 3: need to repeat for 31878685 particles. (took = 0.0813205 sec) FOF: fof-nearest iteration 4: need to repeat for 10552762 particles. (took = 0.0592592 sec) FOF: fof-nearest iteration 5: need to repeat for 1503111 particles. (took = 0.0251628 sec) FOF: fof-nearest iteration 6: need to repeat for 35000 particles. (took = 0.00643265 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.320834 sec FOF: compiling local group data and catalogue took = 0.0174048 sec FOF: Total number of FOF groups with at least 32 particles: 1102582 FOF: Largest FOF group has 123 particles. FOF: Total number of particles in FOF groups: 133828892 FOF: group properties are now allocated.. (presently allocated=119.875 MB) FOF: computation of group properties took = 0.00697336 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.158239 sec FOF: Finished computing FoF groups. Complete work took 0.830755 sec (presently allocated=116.574 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.977 MB) GRAVTREE: Tree construction done. took 0.35214 sec =90298.7 NTopnodes=33561 NTopleaves=29366 tree-build-scalability=0.628907 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 119057562 particles. (took 0.598885 sec) SUBFIND: ngb iteration 2: need to repeat for 111169172 particles. (took 0.445686 sec) SUBFIND: ngb iteration 3: need to repeat for 104401506 particles. (took 0.378171 sec) SUBFIND: ngb iteration 4: need to repeat for 99079435 particles. (took 0.330542 sec) SUBFIND: ngb iteration 5: need to repeat for 94839633 particles. (took 0.303104 sec) SUBFIND: ngb iteration 6: need to repeat for 90910423 particles. (took 0.28329 sec) SUBFIND: ngb iteration 7: need to repeat for 86423461 particles. (took 0.273201 sec) SUBFIND: ngb iteration 8: need to repeat for 81385577 particles. (took 0.264314 sec) SUBFIND: ngb iteration 9: need to repeat for 76985664 particles. (took 0.257763 sec) SUBFIND: ngb iteration 10: need to repeat for 73970144 particles. (took 0.254031 sec) SUBFIND: ngb iteration 11: need to repeat for 72171933 particles. (took 0.257065 sec) SUBFIND: ngb iteration 12: need to repeat for 71047198 particles. (took 0.266041 sec) SUBFIND: ngb iteration 13: need to repeat for 69051395 particles. (took 0.274196 sec) SUBFIND: ngb iteration 14: need to repeat for 63003028 particles. (took 0.272987 sec) SUBFIND: ngb iteration 15: need to repeat for 52495864 particles. (took 0.250261 sec) SUBFIND: ngb iteration 16: need to repeat for 40467290 particles. (took 0.206542 sec) SUBFIND: ngb iteration 17: need to repeat for 30731902 particles. (took 0.154894 sec) SUBFIND: ngb iteration 18: need to repeat for 25138229 particles. (took 0.114019 sec) SUBFIND: ngb iteration 19: need to repeat for 22795420 particles. (took 0.0886448 sec) SUBFIND: ngb iteration 20: need to repeat for 21910513 particles. (took 0.076515 sec) SUBFIND: ngb iteration 21: need to repeat for 21508076 particles. (took 0.0718871 sec) SUBFIND: ngb iteration 22: need to repeat for 21299172 particles. (took 0.0703567 sec) SUBFIND: ngb iteration 23: need to repeat for 21156491 particles. (took 0.0699644 sec) SUBFIND: ngb iteration 24: need to repeat for 21011012 particles. (took 0.0702531 sec) SUBFIND: ngb iteration 25: need to repeat for 20828244 particles. (took 0.071713 sec) SUBFIND: ngb iteration 26: need to repeat for 20587761 particles. (took 0.0738613 sec) SUBFIND: ngb iteration 27: need to repeat for 20269495 particles. (took 0.0765497 sec) SUBFIND: ngb iteration 28: need to repeat for 19845318 particles. (took 0.0807219 sec) SUBFIND: ngb iteration 29: need to repeat for 19285750 particles. (took 0.0852538 sec) SUBFIND: ngb iteration 30: need to repeat for 18562834 particles. (took 0.0916918 sec) SUBFIND: ngb iteration 31: need to repeat for 17636764 particles. (took 0.0975687 sec) SUBFIND: ngb iteration 32: need to repeat for 16477947 particles. (took 0.102143 sec) SUBFIND: ngb iteration 33: need to repeat for 15055151 particles. (took 0.105544 sec) SUBFIND: ngb iteration 34: need to repeat for 13362887 particles. (took 0.102749 sec) SUBFIND: ngb iteration 35: need to repeat for 11430078 particles. (took 0.0970707 sec) SUBFIND: ngb iteration 36: need to repeat for 9327682 particles. (took 0.0849217 sec) SUBFIND: ngb iteration 37: need to repeat for 7172955 particles. (took 0.0708001 sec) SUBFIND: ngb iteration 38: need to repeat for 5125589 particles. (took 0.0551378 sec) SUBFIND: ngb iteration 39: need to repeat for 3336902 particles. (took 0.0417869 sec) SUBFIND: ngb iteration 40: need to repeat for 1939959 particles. (took 0.0304584 sec) SUBFIND: ngb iteration 41: need to repeat for 976353 particles. (took 0.0206961 sec) SUBFIND: ngb iteration 42: need to repeat for 413399 particles. (took 0.0130179 sec) SUBFIND: ngb iteration 43: need to repeat for 141500 particles. (took 0.00725846 sec) SUBFIND: ngb iteration 44: need to repeat for 38456 particles. (took 0.00340489 sec) SUBFIND: ngb iteration 45: need to repeat for 7910 particles. (took 0.00141513 sec) SUBFIND: ngb iteration 46: need to repeat for 1066 particles. (took 0.000675575 sec) SUBFIND: ngb iteration 47: need to repeat for 75 particles. (took 0.000356145 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.95313 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828905 particles, for threshold size factor 0.6) SUBFIND: The other 1102582 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00291738 sec SUBFIND: particle balance=1.10681 SUBFIND: subfind_exchange() took 0.373458 sec SUBFIND: particle balance for processing=1.00029 SUBFIND: subdomain decomposition took 0.069462 sec SUBFIND: serial subfind subdomain decomposition took 0.0687484 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1702 took 25.2661 sec SUBFIND: root-task=0: Serial processing of halo 0 took 25.4349 SUBFIND: Processing overall took (total time=26.6167 sec) SUBFIND: 0 out of 13450 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344211 ALLOCATE: Changing to MaxPartSph = 168253 SUBFIND: subfind_exchange() (for return to original CPU) took 0.40775 sec TREE: Full tree construction for all particles. (presently allocated=107.727 MB) GRAVTREE: Tree construction done. took 0.975841 sec =90298.7 NTopnodes=33561 NTopleaves=29366 tree-build-scalability=0.628907 SUBFIND: SO iteration 1: need to repeat for 1102582 halo centers. (took 0.0190557 sec) SUBFIND: SO iteration 2: need to repeat for 1102582 halo centers. (took 0.0171313 sec) SUBFIND: SO iteration 3: need to repeat for 1102582 halo centers. (took 0.0170248 sec) SUBFIND: SO iteration 4: need to repeat for 1102582 halo centers. (took 0.0167999 sec) SUBFIND: SO iteration 5: need to repeat for 1102582 halo centers. (took 0.016687 sec) SUBFIND: SO iteration 6: need to repeat for 1102582 halo centers. (took 0.0166868 sec) SUBFIND: SO iteration 7: need to repeat for 1102582 halo centers. (took 0.0166309 sec) SUBFIND: SO iteration 8: need to repeat for 1102582 halo centers. (took 0.0166033 sec) SUBFIND: SO iteration 9: need to repeat for 1102582 halo centers. (took 0.0166581 sec) SUBFIND: SO iteration 10: need to repeat for 1102582 halo centers. (took 0.0166518 sec) SUBFIND: SO iteration 11: need to repeat for 1102582 halo centers. (took 0.0166415 sec) SUBFIND: SO iteration 12: need to repeat for 1102582 halo centers. (took 0.016596 sec) SUBFIND: SO iteration 13: need to repeat for 1102582 halo centers. (took 0.0166738 sec) SUBFIND: SO iteration 14: need to repeat for 1102582 halo centers. (took 0.0165786 sec) SUBFIND: SO iteration 15: need to repeat for 1102582 halo centers. (took 0.0166842 sec) SUBFIND: SO iteration 16: need to repeat for 34552 halo centers. (took 0.0162547 sec) SUBFIND: SO iteration 17: need to repeat for 207 halo centers. (took 0.00279059 sec) SUBFIND: SO iteration 18: need to repeat for 5 halo centers. (took 0.000213728 sec) SUBFIND: SO iteration 1: need to repeat for 1102582 halo centers. (took 0.0166464 sec) SUBFIND: SO iteration 2: need to repeat for 1102582 halo centers. (took 0.0162441 sec) SUBFIND: SO iteration 3: need to repeat for 1102582 halo centers. (took 0.0166062 sec) SUBFIND: SO iteration 4: need to repeat for 1102582 halo centers. (took 0.0165212 sec) SUBFIND: SO iteration 5: need to repeat for 1102582 halo centers. (took 0.0165784 sec) SUBFIND: SO iteration 6: need to repeat for 1102582 halo centers. (took 0.0165374 sec) SUBFIND: SO iteration 7: need to repeat for 1102582 halo centers. (took 0.0164888 sec) SUBFIND: SO iteration 8: need to repeat for 1102582 halo centers. (took 0.0165753 sec) SUBFIND: SO iteration 9: need to repeat for 1102582 halo centers. (took 0.0165549 sec) SUBFIND: SO iteration 10: need to repeat for 1102582 halo centers. (took 0.0166148 sec) SUBFIND: SO iteration 11: need to repeat for 1102582 halo centers. (took 0.0165605 sec) SUBFIND: SO iteration 12: need to repeat for 1102582 halo centers. (took 0.0165679 sec) SUBFIND: SO iteration 13: need to repeat for 1102582 halo centers. (took 0.0165238 sec) SUBFIND: SO iteration 14: need to repeat for 1102582 halo centers. (took 0.0165931 sec) SUBFIND: SO iteration 15: need to repeat for 1102582 halo centers. (took 0.0165058 sec) SUBFIND: SO iteration 16: need to repeat for 18142 halo centers. (took 0.0162426 sec) SUBFIND: SO iteration 17: need to repeat for 104 halo centers. (took 0.00171588 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000185965 sec) SUBFIND: SO iteration 1: need to repeat for 1102582 halo centers. (took 0.0166332 sec) SUBFIND: SO iteration 2: need to repeat for 1102582 halo centers. (took 0.0167708 sec) SUBFIND: SO iteration 3: need to repeat for 1102582 halo centers. (took 0.0169267 sec) SUBFIND: SO iteration 4: need to repeat for 1102582 halo centers. (took 0.016695 sec) SUBFIND: SO iteration 5: need to repeat for 1102582 halo centers. (took 0.0166661 sec) SUBFIND: SO iteration 6: need to repeat for 1102582 halo centers. (took 0.0169149 sec) SUBFIND: SO iteration 7: need to repeat for 1102582 halo centers. (took 0.0169383 sec) SUBFIND: SO iteration 8: need to repeat for 1102582 halo centers. (took 0.0168713 sec) SUBFIND: SO iteration 9: need to repeat for 1102582 halo centers. (took 0.0172281 sec) SUBFIND: SO iteration 10: need to repeat for 1102582 halo centers. (took 0.0165662 sec) SUBFIND: SO iteration 11: need to repeat for 1102582 halo centers. (took 0.0169625 sec) SUBFIND: SO iteration 12: need to repeat for 1102582 halo centers. (took 0.0170247 sec) SUBFIND: SO iteration 13: need to repeat for 1102582 halo centers. (took 0.0166526 sec) SUBFIND: SO iteration 14: need to repeat for 1102582 halo centers. (took 0.0172063 sec) SUBFIND: SO iteration 15: need to repeat for 1102582 halo centers. (took 0.0167465 sec) SUBFIND: SO iteration 16: need to repeat for 35198 halo centers. (took 0.0168967 sec) SUBFIND: SO iteration 17: need to repeat for 210 halo centers. (took 0.00279808 sec) SUBFIND: SO iteration 18: need to repeat for 5 halo centers. (took 0.000197859 sec) SUBFIND: SO iteration 1: need to repeat for 1102582 halo centers. (took 0.0166353 sec) SUBFIND: SO iteration 2: need to repeat for 1102582 halo centers. (took 0.0169675 sec) SUBFIND: SO iteration 3: need to repeat for 1102582 halo centers. (took 0.0165047 sec) SUBFIND: SO iteration 4: need to repeat for 1102582 halo centers. (took 0.0168452 sec) SUBFIND: SO iteration 5: need to repeat for 1102582 halo centers. (took 0.0167813 sec) SUBFIND: SO iteration 6: need to repeat for 1102582 halo centers. (took 0.016768 sec) SUBFIND: SO iteration 7: need to repeat for 1102582 halo centers. (took 0.0167943 sec) SUBFIND: SO iteration 8: need to repeat for 1102582 halo centers. (took 0.0167834 sec) SUBFIND: SO iteration 9: need to repeat for 1102582 halo centers. (took 0.0167637 sec) SUBFIND: SO iteration 10: need to repeat for 1102582 halo centers. (took 0.0167747 sec) SUBFIND: SO iteration 11: need to repeat for 1102582 halo centers. (took 0.0168115 sec) SUBFIND: SO iteration 12: need to repeat for 1102582 halo centers. (took 0.016794 sec) SUBFIND: SO iteration 13: need to repeat for 1102582 halo centers. (took 0.0168144 sec) SUBFIND: SO iteration 14: need to repeat for 1102582 halo centers. (took 0.0166959 sec) SUBFIND: SO iteration 15: need to repeat for 1102582 halo centers. (took 0.0167387 sec) SUBFIND: SO iteration 16: need to repeat for 690096 halo centers. (took 0.0166488 sec) SUBFIND: SO iteration 17: need to repeat for 35225 halo centers. (took 0.0129732 sec) SUBFIND: SO iteration 18: need to repeat for 1557 halo centers. (took 0.00275057 sec) SUBFIND: SO iteration 19: need to repeat for 2 halo centers. (took 0.000298584 sec) SUBFIND: determining spherical overdensity masses took 1.09903 sec SUBFIND: assembled and ordered groups and subhalos (took 0.170863 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.13957 sec, total size 414.902 MB, corresponds to effective I/O rate of 193.919 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.14066 sec SUBFIND: Finished with SUBFIND. (total time=39.1694 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1115747 SUBFIND: Largest subhalo has 123 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828892 FOF: preparing output order of particles took 1.30924 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.41782 sec, total size 5343.29 MB, corresponds to effective I/O rate of 634.759 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 215 (rank 215 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 143 (rank 143 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.