TACC: Starting up job 4245022 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186311.49 Mb (on task= 162), Smallest = 186208.98 Mb (on task= 0), Average = 186282.22 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5177.91 Mb (on task= 0), Smallest = 5075.40 Mb (on task= 162), Average = 5104.67 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5177.91 Mb (on task= 0), Smallest = 5075.40 Mb (on task= 162), Average = 5104.67 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 371), Average = 95257.24 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-006.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.9647 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65508472 (tot= 65508472) masstab= 0 READIC: Type 1: 68270279 (tot= 68270279) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 50189 (tot= 50189) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.23306 sec, total size 6376.1 MB, corresponds to effective I/O rate of 1218.43 MB/sec READIC: Total number of particles : 133828940 INIT: Testing ID uniqueness... INIT: success. took=0.0581766 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=29814, determination of top-level tree involved 5 iterations and took 0.459932 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=166 for nextra=75, reaching maximum imbalance of 1.10427|1.1043 DOMAIN: combining multiple-domains took 0.0164466 sec DOMAIN: exchange of 68320468 particles DOMAIN: particle exchange done. (took 0.324946 sec) DOMAIN: domain decomposition done. (took in total 0.808923 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0467657 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=116.004 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.108841 sec =69676.2 NTopnodes=34073 NTopleaves=29814 FOF: Start linking particles (presently allocated=129.038 MB) FOF: linking of small cells took 0.0013182 sec FOF: local links done (took 0.102927 sec, avg-work=0.0913844, imbalance=1.11505). FOF: Marked=162792 out of the 68270279 primaries which are linked FOF: begin linking across processors (presently allocated=130.333 MB) FOF: have done 11413 cross links (processed 162792, took 0.0045902 sec) FOF: have done 2769 cross links (processed 81368, took 0.00375466 sec) FOF: have done 432 cross links (processed 11801, took 0.0032321 sec) FOF: have done 66 cross links (processed 1992, took 0.00308966 sec) FOF: have done 11 cross links (processed 250, took 0.00296367 sec) FOF: have done 2 cross links (processed 56, took 0.00306291 sec) FOF: have done 0 cross links (processed 7, took 0.0029454 sec) FOF: Local groups found. FOF: primary group finding took = 0.134049 sec FOF: Start finding nearest dm-particle (presently allocated=129.038 MB) FOF: fof-nearest iteration 1: need to repeat for 63614898 particles. (took = 0.0661235 sec) FOF: fof-nearest iteration 2: need to repeat for 54296349 particles. (took = 0.0747589 sec) FOF: fof-nearest iteration 3: need to repeat for 31486360 particles. (took = 0.0803898 sec) FOF: fof-nearest iteration 4: need to repeat for 10284335 particles. (took = 0.0583357 sec) FOF: fof-nearest iteration 5: need to repeat for 1451230 particles. (took = 0.0248178 sec) FOF: fof-nearest iteration 6: need to repeat for 33850 particles. (took = 0.00629993 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.316425 sec FOF: compiling local group data and catalogue took = 0.0172423 sec FOF: Total number of FOF groups with at least 32 particles: 1054753 FOF: Largest FOF group has 128 particles. FOF: Total number of particles in FOF groups: 133828932 FOF: group properties are now allocated.. (presently allocated=119.896 MB) FOF: computation of group properties took = 0.0065717 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.167622 sec FOF: Finished computing FoF groups. Complete work took 0.837943 sec (presently allocated=116.6 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.909 MB) GRAVTREE: Tree construction done. took 0.354367 sec =90174 NTopnodes=34073 NTopleaves=29814 tree-build-scalability=0.622725 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 118809143 particles. (took 0.591595 sec) SUBFIND: ngb iteration 2: need to repeat for 111071844 particles. (took 0.438831 sec) SUBFIND: ngb iteration 3: need to repeat for 104486717 particles. (took 0.365817 sec) SUBFIND: ngb iteration 4: need to repeat for 99441710 particles. (took 0.311648 sec) SUBFIND: ngb iteration 5: need to repeat for 95721067 particles. (took 0.279939 sec) SUBFIND: ngb iteration 6: need to repeat for 92801189 particles. (took 0.267546 sec) SUBFIND: ngb iteration 7: need to repeat for 90151452 particles. (took 0.265904 sec) SUBFIND: ngb iteration 8: need to repeat for 87598959 particles. (took 0.266737 sec) SUBFIND: ngb iteration 9: need to repeat for 85499596 particles. (took 0.272153 sec) SUBFIND: ngb iteration 10: need to repeat for 84047585 particles. (took 0.28132 sec) SUBFIND: ngb iteration 11: need to repeat for 83137832 particles. (took 0.294682 sec) SUBFIND: ngb iteration 12: need to repeat for 82300653 particles. (took 0.308966 sec) SUBFIND: ngb iteration 13: need to repeat for 78960770 particles. (took 0.320748 sec) SUBFIND: ngb iteration 14: need to repeat for 69204719 particles. (took 0.317507 sec) SUBFIND: ngb iteration 15: need to repeat for 54622363 particles. (took 0.282315 sec) SUBFIND: ngb iteration 16: need to repeat for 39147446 particles. (took 0.224655 sec) SUBFIND: ngb iteration 17: need to repeat for 26398506 particles. (took 0.160572 sec) SUBFIND: ngb iteration 18: need to repeat for 17944850 particles. (took 0.110229 sec) SUBFIND: ngb iteration 19: need to repeat for 13135474 particles. (took 0.0760387 sec) SUBFIND: ngb iteration 20: need to repeat for 10626592 particles. (took 0.0540515 sec) SUBFIND: ngb iteration 21: need to repeat for 9464912 particles. (took 0.0419595 sec) SUBFIND: ngb iteration 22: need to repeat for 9016120 particles. (took 0.0355551 sec) SUBFIND: ngb iteration 23: need to repeat for 8845694 particles. (took 0.0326688 sec) SUBFIND: ngb iteration 24: need to repeat for 8755508 particles. (took 0.0323044 sec) SUBFIND: ngb iteration 25: need to repeat for 8667847 particles. (took 0.0330438 sec) SUBFIND: ngb iteration 26: need to repeat for 8553780 particles. (took 0.0344888 sec) SUBFIND: ngb iteration 27: need to repeat for 8405498 particles. (took 0.0348357 sec) SUBFIND: ngb iteration 28: need to repeat for 8206973 particles. (took 0.0357928 sec) SUBFIND: ngb iteration 29: need to repeat for 7950717 particles. (took 0.0387339 sec) SUBFIND: ngb iteration 30: need to repeat for 7624205 particles. (took 0.0421106 sec) SUBFIND: ngb iteration 31: need to repeat for 7212134 particles. (took 0.0446856 sec) SUBFIND: ngb iteration 32: need to repeat for 6696609 particles. (took 0.0458276 sec) SUBFIND: ngb iteration 33: need to repeat for 6076676 particles. (took 0.047039 sec) SUBFIND: ngb iteration 34: need to repeat for 5348918 particles. (took 0.045774 sec) SUBFIND: ngb iteration 35: need to repeat for 4534721 particles. (took 0.0444767 sec) SUBFIND: ngb iteration 36: need to repeat for 3664971 particles. (took 0.0384033 sec) SUBFIND: ngb iteration 37: need to repeat for 2789080 particles. (took 0.0317855 sec) SUBFIND: ngb iteration 38: need to repeat for 1962725 particles. (took 0.0248748 sec) SUBFIND: ngb iteration 39: need to repeat for 1264262 particles. (took 0.0192221 sec) SUBFIND: ngb iteration 40: need to repeat for 726358 particles. (took 0.0148443 sec) SUBFIND: ngb iteration 41: need to repeat for 359627 particles. (took 0.0101526 sec) SUBFIND: ngb iteration 42: need to repeat for 148114 particles. (took 0.00568603 sec) SUBFIND: ngb iteration 43: need to repeat for 50763 particles. (took 0.0033751 sec) SUBFIND: ngb iteration 44: need to repeat for 13719 particles. (took 0.0016888 sec) SUBFIND: ngb iteration 45: need to repeat for 2746 particles. (took 0.000817789 sec) SUBFIND: ngb iteration 46: need to repeat for 439 particles. (took 0.00060128 sec) SUBFIND: ngb iteration 47: need to repeat for 82 particles. (took 0.000448056 sec) SUBFIND: ngb iteration 48: need to repeat for 17 particles. (took 0.000367595 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.23827 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828940 particles, for threshold size factor 0.6) SUBFIND: The other 1054753 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00316196 sec SUBFIND: particle balance=1.10427 SUBFIND: subfind_exchange() took 0.376208 sec SUBFIND: particle balance for processing=1.00018 SUBFIND: subdomain decomposition took 0.0691261 sec SUBFIND: serial subfind subdomain decomposition took 0.0685954 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1628 took 23.9573 sec SUBFIND: root-task=0: Serial processing of halo 0 took 24.1259 SUBFIND: Processing overall took (total time=25.5662 sec) SUBFIND: 0 out of 9882 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344213 ALLOCATE: Changing to MaxPartSph = 168490 SUBFIND: subfind_exchange() (for return to original CPU) took 0.407868 sec TREE: Full tree construction for all particles. (presently allocated=107.728 MB) GRAVTREE: Tree construction done. took 0.981743 sec =90174 NTopnodes=34073 NTopleaves=29814 tree-build-scalability=0.622725 SUBFIND: SO iteration 1: need to repeat for 1054753 halo centers. (took 0.0184047 sec) SUBFIND: SO iteration 2: need to repeat for 1054753 halo centers. (took 0.0167532 sec) SUBFIND: SO iteration 3: need to repeat for 1054753 halo centers. (took 0.0166199 sec) SUBFIND: SO iteration 4: need to repeat for 1054753 halo centers. (took 0.0164869 sec) SUBFIND: SO iteration 5: need to repeat for 1054753 halo centers. (took 0.0163157 sec) SUBFIND: SO iteration 6: need to repeat for 1054753 halo centers. (took 0.0163331 sec) SUBFIND: SO iteration 7: need to repeat for 1054753 halo centers. (took 0.0162512 sec) SUBFIND: SO iteration 8: need to repeat for 1054753 halo centers. (took 0.0163265 sec) SUBFIND: SO iteration 9: need to repeat for 1054753 halo centers. (took 0.0162417 sec) SUBFIND: SO iteration 10: need to repeat for 1054753 halo centers. (took 0.0162895 sec) SUBFIND: SO iteration 11: need to repeat for 1054753 halo centers. (took 0.0162794 sec) SUBFIND: SO iteration 12: need to repeat for 1054753 halo centers. (took 0.0162422 sec) SUBFIND: SO iteration 13: need to repeat for 1054753 halo centers. (took 0.0162963 sec) SUBFIND: SO iteration 14: need to repeat for 1054753 halo centers. (took 0.0162896 sec) SUBFIND: SO iteration 15: need to repeat for 1054753 halo centers. (took 0.0162755 sec) SUBFIND: SO iteration 16: need to repeat for 30498 halo centers. (took 0.0159115 sec) SUBFIND: SO iteration 17: need to repeat for 145 halo centers. (took 0.00253381 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000190897 sec) SUBFIND: SO iteration 1: need to repeat for 1054753 halo centers. (took 0.0163008 sec) SUBFIND: SO iteration 2: need to repeat for 1054753 halo centers. (took 0.0159001 sec) SUBFIND: SO iteration 3: need to repeat for 1054753 halo centers. (took 0.0161883 sec) SUBFIND: SO iteration 4: need to repeat for 1054753 halo centers. (took 0.0161465 sec) SUBFIND: SO iteration 5: need to repeat for 1054753 halo centers. (took 0.0161857 sec) SUBFIND: SO iteration 6: need to repeat for 1054753 halo centers. (took 0.0161925 sec) SUBFIND: SO iteration 7: need to repeat for 1054753 halo centers. (took 0.0162216 sec) SUBFIND: SO iteration 8: need to repeat for 1054753 halo centers. (took 0.0162273 sec) SUBFIND: SO iteration 9: need to repeat for 1054753 halo centers. (took 0.0161842 sec) SUBFIND: SO iteration 10: need to repeat for 1054753 halo centers. (took 0.0162576 sec) SUBFIND: SO iteration 11: need to repeat for 1054753 halo centers. (took 0.0161712 sec) SUBFIND: SO iteration 12: need to repeat for 1054753 halo centers. (took 0.0161898 sec) SUBFIND: SO iteration 13: need to repeat for 1054753 halo centers. (took 0.0162418 sec) SUBFIND: SO iteration 14: need to repeat for 1054753 halo centers. (took 0.0162071 sec) SUBFIND: SO iteration 15: need to repeat for 1054753 halo centers. (took 0.0161768 sec) SUBFIND: SO iteration 16: need to repeat for 15820 halo centers. (took 0.0158943 sec) SUBFIND: SO iteration 17: need to repeat for 74 halo centers. (took 0.00153947 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000186956 sec) SUBFIND: SO iteration 1: need to repeat for 1054753 halo centers. (took 0.0162651 sec) SUBFIND: SO iteration 2: need to repeat for 1054753 halo centers. (took 0.0164873 sec) SUBFIND: SO iteration 3: need to repeat for 1054753 halo centers. (took 0.0165516 sec) SUBFIND: SO iteration 4: need to repeat for 1054753 halo centers. (took 0.0164996 sec) SUBFIND: SO iteration 5: need to repeat for 1054753 halo centers. (took 0.0171426 sec) SUBFIND: SO iteration 6: need to repeat for 1054753 halo centers. (took 0.0170497 sec) SUBFIND: SO iteration 7: need to repeat for 1054753 halo centers. (took 0.0178025 sec) SUBFIND: SO iteration 8: need to repeat for 1054753 halo centers. (took 0.0176755 sec) SUBFIND: SO iteration 9: need to repeat for 1054753 halo centers. (took 0.0180684 sec) SUBFIND: SO iteration 10: need to repeat for 1054753 halo centers. (took 0.0176188 sec) SUBFIND: SO iteration 11: need to repeat for 1054753 halo centers. (took 0.0182507 sec) SUBFIND: SO iteration 12: need to repeat for 1054753 halo centers. (took 0.0171925 sec) SUBFIND: SO iteration 13: need to repeat for 1054753 halo centers. (took 0.0175817 sec) SUBFIND: SO iteration 14: need to repeat for 1054753 halo centers. (took 0.0166122 sec) SUBFIND: SO iteration 15: need to repeat for 1054753 halo centers. (took 0.0170402 sec) SUBFIND: SO iteration 16: need to repeat for 31053 halo centers. (took 0.0164368 sec) SUBFIND: SO iteration 17: need to repeat for 153 halo centers. (took 0.00254919 sec) SUBFIND: SO iteration 18: need to repeat for 3 halo centers. (took 0.000205273 sec) SUBFIND: SO iteration 1: need to repeat for 1054753 halo centers. (took 0.0165821 sec) SUBFIND: SO iteration 2: need to repeat for 1054753 halo centers. (took 0.0166385 sec) SUBFIND: SO iteration 3: need to repeat for 1054753 halo centers. (took 0.0162309 sec) SUBFIND: SO iteration 4: need to repeat for 1054753 halo centers. (took 0.0165504 sec) SUBFIND: SO iteration 5: need to repeat for 1054753 halo centers. (took 0.0166444 sec) SUBFIND: SO iteration 6: need to repeat for 1054753 halo centers. (took 0.0164212 sec) SUBFIND: SO iteration 7: need to repeat for 1054753 halo centers. (took 0.016453 sec) SUBFIND: SO iteration 8: need to repeat for 1054753 halo centers. (took 0.016459 sec) SUBFIND: SO iteration 9: need to repeat for 1054753 halo centers. (took 0.0164597 sec) SUBFIND: SO iteration 10: need to repeat for 1054753 halo centers. (took 0.0164536 sec) SUBFIND: SO iteration 11: need to repeat for 1054753 halo centers. (took 0.0164884 sec) SUBFIND: SO iteration 12: need to repeat for 1054753 halo centers. (took 0.0164467 sec) SUBFIND: SO iteration 13: need to repeat for 1054753 halo centers. (took 0.0164811 sec) SUBFIND: SO iteration 14: need to repeat for 1054753 halo centers. (took 0.0163984 sec) SUBFIND: SO iteration 15: need to repeat for 1054753 halo centers. (took 0.0165612 sec) SUBFIND: SO iteration 16: need to repeat for 648148 halo centers. (took 0.0162877 sec) SUBFIND: SO iteration 17: need to repeat for 31272 halo centers. (took 0.0125736 sec) SUBFIND: SO iteration 18: need to repeat for 1076 halo centers. (took 0.00258176 sec) SUBFIND: determining spherical overdensity masses took 1.08589 sec SUBFIND: assembled and ordered groups and subhalos (took 0.174464 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.12577 sec, total size 396.31 MB, corresponds to effective I/O rate of 186.431 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.12685 sec SUBFIND: Finished with SUBFIND. (total time=37.3861 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1064467 SUBFIND: Largest subhalo has 128 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828932 FOF: preparing output order of particles took 1.30268 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.01207 sec, total size 5344.34 MB, corresponds to effective I/O rate of 593.02 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 167 (rank 167 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 334 (rank 334 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.