TACC: Starting up job 4245022 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186315.15 Mb (on task= 540), Smallest = 186194.84 Mb (on task= 0), Average = 186281.59 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5192.04 Mb (on task= 0), Smallest = 5071.73 Mb (on task= 540), Average = 5105.30 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5192.04 Mb (on task= 0), Smallest = 5071.73 Mb (on task= 540), Average = 5105.30 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 365), Average = 95257.25 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-006.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.9489 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65761096 (tot= 65761096) masstab= 0 READIC: Type 1: 67975273 (tot= 67975273) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 92663 (tot= 92663) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.89965 sec, total size 6377.07 MB, corresponds to effective I/O rate of 1301.53 MB/sec READIC: Total number of particles : 133829032 INIT: Testing ID uniqueness... INIT: success. took=0.06363 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=30115, determination of top-level tree involved 6 iterations and took 0.461102 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=166 for nextra=75, reaching maximum imbalance of 1.10404|1.1043 DOMAIN: combining multiple-domains took 0.0147807 sec DOMAIN: exchange of 68067936 particles DOMAIN: particle exchange done. (took 0.30841 sec) DOMAIN: domain decomposition done. (took in total 0.791893 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0469936 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=116.135 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.10759 sec =67667.7 NTopnodes=34417 NTopleaves=30115 FOF: Start linking particles (presently allocated=128.894 MB) FOF: linking of small cells took 0.00128448 sec FOF: local links done (took 0.105458 sec, avg-work=0.0942098, imbalance=1.11219). FOF: Marked=167635 out of the 67975273 primaries which are linked FOF: begin linking across processors (presently allocated=130.183 MB) FOF: have done 10773 cross links (processed 167635, took 0.00455876 sec) FOF: have done 2761 cross links (processed 84946, took 0.00378827 sec) FOF: have done 446 cross links (processed 12223, took 0.00325904 sec) FOF: have done 76 cross links (processed 1939, took 0.00302098 sec) FOF: have done 9 cross links (processed 307, took 0.00298036 sec) FOF: have done 2 cross links (processed 57, took 0.00297468 sec) FOF: have done 0 cross links (processed 8, took 0.00294213 sec) FOF: Local groups found. FOF: primary group finding took = 0.136422 sec FOF: Start finding nearest dm-particle (presently allocated=128.894 MB) FOF: fof-nearest iteration 1: need to repeat for 63768445 particles. (took = 0.0691677 sec) FOF: fof-nearest iteration 2: need to repeat for 53833619 particles. (took = 0.0791781 sec) FOF: fof-nearest iteration 3: need to repeat for 30014319 particles. (took = 0.0852535 sec) FOF: fof-nearest iteration 4: need to repeat for 9260443 particles. (took = 0.0590871 sec) FOF: fof-nearest iteration 5: need to repeat for 1263893 particles. (took = 0.0234165 sec) FOF: fof-nearest iteration 6: need to repeat for 29241 particles. (took = 0.00598331 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.327913 sec FOF: compiling local group data and catalogue took = 0.0168338 sec FOF: Total number of FOF groups with at least 32 particles: 862040 FOF: Largest FOF group has 157 particles. FOF: Total number of particles in FOF groups: 133829031 FOF: group properties are now allocated.. (presently allocated=119.925 MB) FOF: computation of group properties took = 0.00619831 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.162227 sec FOF: Finished computing FoF groups. Complete work took 0.840632 sec (presently allocated=116.624 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.658 MB) GRAVTREE: Tree construction done. took 0.346366 sec =87832.3 NTopnodes=34417 NTopleaves=30115 tree-build-scalability=0.608755 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133597062 particles. (took 0.628238 sec) SUBFIND: ngb iteration 2: need to repeat for 133467862 particles. (took 0.520547 sec) SUBFIND: ngb iteration 3: need to repeat for 133347390 particles. (took 0.462071 sec) SUBFIND: ngb iteration 4: need to repeat for 133249563 particles. (took 0.430475 sec) SUBFIND: ngb iteration 5: need to repeat for 133169268 particles. (took 0.415223 sec) SUBFIND: ngb iteration 6: need to repeat for 133105566 particles. (took 0.412094 sec) SUBFIND: ngb iteration 7: need to repeat for 133053499 particles. (took 0.417791 sec) SUBFIND: ngb iteration 8: need to repeat for 133007873 particles. (took 0.432341 sec) SUBFIND: ngb iteration 9: need to repeat for 132970099 particles. (took 0.451841 sec) SUBFIND: ngb iteration 10: need to repeat for 132940320 particles. (took 0.473822 sec) SUBFIND: ngb iteration 11: need to repeat for 132714799 particles. (took 0.498056 sec) SUBFIND: ngb iteration 12: need to repeat for 129813260 particles. (took 0.521543 sec) SUBFIND: ngb iteration 13: need to repeat for 120618082 particles. (took 0.530648 sec) SUBFIND: ngb iteration 14: need to repeat for 107687119 particles. (took 0.513335 sec) SUBFIND: ngb iteration 15: need to repeat for 93717133 particles. (took 0.474551 sec) SUBFIND: ngb iteration 16: need to repeat for 80140441 particles. (took 0.426522 sec) SUBFIND: ngb iteration 17: need to repeat for 66445185 particles. (took 0.377637 sec) SUBFIND: ngb iteration 18: need to repeat for 51705881 particles. (took 0.332477 sec) SUBFIND: ngb iteration 19: need to repeat for 36128643 particles. (took 0.281965 sec) SUBFIND: ngb iteration 20: need to repeat for 21750370 particles. (took 0.219353 sec) SUBFIND: ngb iteration 21: need to repeat for 10882069 particles. (took 0.152112 sec) SUBFIND: ngb iteration 22: need to repeat for 4397663 particles. (took 0.0880726 sec) SUBFIND: ngb iteration 23: need to repeat for 1423518 particles. (took 0.0428477 sec) SUBFIND: ngb iteration 24: need to repeat for 422629 particles. (took 0.0171889 sec) SUBFIND: ngb iteration 25: need to repeat for 198747 particles. (took 0.0062822 sec) SUBFIND: ngb iteration 26: need to repeat for 165339 particles. (took 0.00232632 sec) SUBFIND: ngb iteration 27: need to repeat for 158924 particles. (took 0.00223593 sec) SUBFIND: ngb iteration 28: need to repeat for 153952 particles. (took 0.0025594 sec) SUBFIND: ngb iteration 29: need to repeat for 147900 particles. (took 0.0028815 sec) SUBFIND: ngb iteration 30: need to repeat for 140029 particles. (took 0.0031389 sec) SUBFIND: ngb iteration 31: need to repeat for 130537 particles. (took 0.00317016 sec) SUBFIND: ngb iteration 32: need to repeat for 119157 particles. (took 0.0036735 sec) SUBFIND: ngb iteration 33: need to repeat for 106135 particles. (took 0.00399437 sec) SUBFIND: ngb iteration 34: need to repeat for 91049 particles. (took 0.00339378 sec) SUBFIND: ngb iteration 35: need to repeat for 74941 particles. (took 0.00334915 sec) SUBFIND: ngb iteration 36: need to repeat for 58602 particles. (took 0.00299171 sec) SUBFIND: ngb iteration 37: need to repeat for 42771 particles. (took 0.00284842 sec) SUBFIND: ngb iteration 38: need to repeat for 28624 particles. (took 0.0021813 sec) SUBFIND: ngb iteration 39: need to repeat for 17718 particles. (took 0.00163262 sec) SUBFIND: ngb iteration 40: need to repeat for 9386 particles. (took 0.00132663 sec) SUBFIND: ngb iteration 41: need to repeat for 4387 particles. (took 0.000994427 sec) SUBFIND: ngb iteration 42: need to repeat for 1693 particles. (took 0.000835601 sec) SUBFIND: ngb iteration 43: need to repeat for 629 particles. (took 0.000629652 sec) SUBFIND: ngb iteration 44: need to repeat for 222 particles. (took 0.000585783 sec) SUBFIND: ngb iteration 45: need to repeat for 55 particles. (took 0.000430182 sec) SUBFIND: ngb iteration 46: need to repeat for 3 particles. (took 0.000314997 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 9.17737 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133829032 particles, for threshold size factor 0.6) SUBFIND: The other 862040 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00265777 sec SUBFIND: particle balance=1.10395 SUBFIND: subfind_exchange() took 0.375203 sec SUBFIND: particle balance for processing=1.00053 SUBFIND: subdomain decomposition took 0.0692093 sec SUBFIND: serial subfind subdomain decomposition took 0.068599 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1331 took 19.8635 sec SUBFIND: root-task=0: Serial processing of halo 0 took 20.0323 SUBFIND: Processing overall took (total time=21.4038 sec) SUBFIND: 0 out of 9798 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344213 ALLOCATE: Changing to MaxPartSph = 169140 SUBFIND: subfind_exchange() (for return to original CPU) took 0.410166 sec TREE: Full tree construction for all particles. (presently allocated=107.817 MB) GRAVTREE: Tree construction done. took 0.994806 sec =87832.3 NTopnodes=34417 NTopleaves=30115 tree-build-scalability=0.608755 SUBFIND: SO iteration 1: need to repeat for 862040 halo centers. (took 0.0173081 sec) SUBFIND: SO iteration 2: need to repeat for 862040 halo centers. (took 0.0157657 sec) SUBFIND: SO iteration 3: need to repeat for 862040 halo centers. (took 0.0156031 sec) SUBFIND: SO iteration 4: need to repeat for 862040 halo centers. (took 0.0153689 sec) SUBFIND: SO iteration 5: need to repeat for 862040 halo centers. (took 0.0152082 sec) SUBFIND: SO iteration 6: need to repeat for 862040 halo centers. (took 0.0152382 sec) SUBFIND: SO iteration 7: need to repeat for 862040 halo centers. (took 0.0152108 sec) SUBFIND: SO iteration 8: need to repeat for 862040 halo centers. (took 0.0151761 sec) SUBFIND: SO iteration 9: need to repeat for 862040 halo centers. (took 0.0152059 sec) SUBFIND: SO iteration 10: need to repeat for 862040 halo centers. (took 0.0152289 sec) SUBFIND: SO iteration 11: need to repeat for 862040 halo centers. (took 0.0152603 sec) SUBFIND: SO iteration 12: need to repeat for 862040 halo centers. (took 0.0152791 sec) SUBFIND: SO iteration 13: need to repeat for 862040 halo centers. (took 0.0152221 sec) SUBFIND: SO iteration 14: need to repeat for 862040 halo centers. (took 0.01518 sec) SUBFIND: SO iteration 15: need to repeat for 862040 halo centers. (took 0.0152207 sec) SUBFIND: SO iteration 16: need to repeat for 18780 halo centers. (took 0.0149862 sec) SUBFIND: SO iteration 17: need to repeat for 150 halo centers. (took 0.00183598 sec) SUBFIND: SO iteration 1: need to repeat for 862040 halo centers. (took 0.0155673 sec) SUBFIND: SO iteration 2: need to repeat for 862040 halo centers. (took 0.0151519 sec) SUBFIND: SO iteration 3: need to repeat for 862040 halo centers. (took 0.0154345 sec) SUBFIND: SO iteration 4: need to repeat for 862040 halo centers. (took 0.0153098 sec) SUBFIND: SO iteration 5: need to repeat for 862040 halo centers. (took 0.0156079 sec) SUBFIND: SO iteration 6: need to repeat for 862040 halo centers. (took 0.0151904 sec) SUBFIND: SO iteration 7: need to repeat for 862040 halo centers. (took 0.0152655 sec) SUBFIND: SO iteration 8: need to repeat for 862040 halo centers. (took 0.0160527 sec) SUBFIND: SO iteration 9: need to repeat for 862040 halo centers. (took 0.0155872 sec) SUBFIND: SO iteration 10: need to repeat for 862040 halo centers. (took 0.0151583 sec) SUBFIND: SO iteration 11: need to repeat for 862040 halo centers. (took 0.0151814 sec) SUBFIND: SO iteration 12: need to repeat for 862040 halo centers. (took 0.0152956 sec) SUBFIND: SO iteration 13: need to repeat for 862040 halo centers. (took 0.0153645 sec) SUBFIND: SO iteration 14: need to repeat for 862040 halo centers. (took 0.0150831 sec) SUBFIND: SO iteration 15: need to repeat for 862040 halo centers. (took 0.0153181 sec) SUBFIND: SO iteration 16: need to repeat for 9304 halo centers. (took 0.0149383 sec) SUBFIND: SO iteration 17: need to repeat for 52 halo centers. (took 0.00105582 sec) SUBFIND: SO iteration 1: need to repeat for 862040 halo centers. (took 0.0152374 sec) SUBFIND: SO iteration 2: need to repeat for 862040 halo centers. (took 0.0156658 sec) SUBFIND: SO iteration 3: need to repeat for 862040 halo centers. (took 0.0155605 sec) SUBFIND: SO iteration 4: need to repeat for 862040 halo centers. (took 0.0152445 sec) SUBFIND: SO iteration 5: need to repeat for 862040 halo centers. (took 0.0152229 sec) SUBFIND: SO iteration 6: need to repeat for 862040 halo centers. (took 0.0152043 sec) SUBFIND: SO iteration 7: need to repeat for 862040 halo centers. (took 0.0152047 sec) SUBFIND: SO iteration 8: need to repeat for 862040 halo centers. (took 0.0151754 sec) SUBFIND: SO iteration 9: need to repeat for 862040 halo centers. (took 0.0151522 sec) SUBFIND: SO iteration 10: need to repeat for 862040 halo centers. (took 0.0152023 sec) SUBFIND: SO iteration 11: need to repeat for 862040 halo centers. (took 0.0151806 sec) SUBFIND: SO iteration 12: need to repeat for 862040 halo centers. (took 0.0152453 sec) SUBFIND: SO iteration 13: need to repeat for 862040 halo centers. (took 0.0150861 sec) SUBFIND: SO iteration 14: need to repeat for 862040 halo centers. (took 0.0152456 sec) SUBFIND: SO iteration 15: need to repeat for 862040 halo centers. (took 0.0151869 sec) SUBFIND: SO iteration 16: need to repeat for 19133 halo centers. (took 0.0149476 sec) SUBFIND: SO iteration 17: need to repeat for 152 halo centers. (took 0.001792 sec) SUBFIND: SO iteration 1: need to repeat for 862040 halo centers. (took 0.0151424 sec) SUBFIND: SO iteration 2: need to repeat for 862040 halo centers. (took 0.0157029 sec) SUBFIND: SO iteration 3: need to repeat for 862040 halo centers. (took 0.0152451 sec) SUBFIND: SO iteration 4: need to repeat for 862040 halo centers. (took 0.0155377 sec) SUBFIND: SO iteration 5: need to repeat for 862040 halo centers. (took 0.0155109 sec) SUBFIND: SO iteration 6: need to repeat for 862040 halo centers. (took 0.0154689 sec) SUBFIND: SO iteration 7: need to repeat for 862040 halo centers. (took 0.0155211 sec) SUBFIND: SO iteration 8: need to repeat for 862040 halo centers. (took 0.0154809 sec) SUBFIND: SO iteration 9: need to repeat for 862040 halo centers. (took 0.0155061 sec) SUBFIND: SO iteration 10: need to repeat for 862040 halo centers. (took 0.015482 sec) SUBFIND: SO iteration 11: need to repeat for 862040 halo centers. (took 0.0154805 sec) SUBFIND: SO iteration 12: need to repeat for 862040 halo centers. (took 0.015519 sec) SUBFIND: SO iteration 13: need to repeat for 862040 halo centers. (took 0.0154814 sec) SUBFIND: SO iteration 14: need to repeat for 862040 halo centers. (took 0.0155759 sec) SUBFIND: SO iteration 15: need to repeat for 862040 halo centers. (took 0.0155228 sec) SUBFIND: SO iteration 16: need to repeat for 496430 halo centers. (took 0.0154427 sec) SUBFIND: SO iteration 17: need to repeat for 19172 halo centers. (took 0.0114935 sec) SUBFIND: SO iteration 18: need to repeat for 523 halo centers. (took 0.00166706 sec) SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.000217911 sec) SUBFIND: determining spherical overdensity masses took 1.0047 sec SUBFIND: assembled and ordered groups and subhalos (took 0.163343 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.16262 sec, total size 324.28 MB, corresponds to effective I/O rate of 149.947 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.16396 sec SUBFIND: Finished with SUBFIND. (total time=36.1126 sec) SUBFIND: Total number of subhalos with at least 20 particles: 871820 SUBFIND: Largest subhalo has 157 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133829031 FOF: preparing output order of particles took 1.24726 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.24298 sec, total size 5347.23 MB, corresponds to effective I/O rate of 578.518 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 596 (rank 596 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 610 (rank 610 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 600 (rank 600 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 601 (rank 601 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.