TACC: Starting up job 4245022 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186315.06 Mb (on task= 594), Smallest = 186201.23 Mb (on task= 0), Average = 186280.49 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5185.66 Mb (on task= 0), Smallest = 5071.83 Mb (on task= 594), Average = 5106.40 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5185.66 Mb (on task= 0), Smallest = 5071.83 Mb (on task= 594), Average = 5106.40 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 361), Average = 95257.25 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-006.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.3389 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65794260 (tot= 65794260) masstab= 0 READIC: Type 1: 67924187 (tot= 67924187) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 110569 (tot= 110569) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 6.42871 sec, total size 6377.19 MB, corresponds to effective I/O rate of 991.985 MB/sec READIC: Total number of particles : 133829016 INIT: Testing ID uniqueness... INIT: success. took=0.0632712 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=30143, determination of top-level tree involved 5 iterations and took 0.457933 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=168 for nextra=117, reaching maximum imbalance of 1.10671|1.10688 DOMAIN: combining multiple-domains took 0.0160949 sec DOMAIN: exchange of 68034756 particles DOMAIN: particle exchange done. (took 0.305631 sec) DOMAIN: domain decomposition done. (took in total 0.787075 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0466063 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=116.152 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.114854 sec =66989 NTopnodes=34449 NTopleaves=30143 FOF: Start linking particles (presently allocated=128.812 MB) FOF: linking of small cells took 0.00131606 sec FOF: local links done (took 0.106597 sec, avg-work=0.0952874, imbalance=1.11457). FOF: Marked=167422 out of the 67924187 primaries which are linked FOF: begin linking across processors (presently allocated=130.09 MB) FOF: have done 10550 cross links (processed 167422, took 0.00466453 sec) FOF: have done 2691 cross links (processed 84831, took 0.00380617 sec) FOF: have done 446 cross links (processed 12549, took 0.00339636 sec) FOF: have done 98 cross links (processed 2168, took 0.00310901 sec) FOF: have done 26 cross links (processed 501, took 0.00311357 sec) FOF: have done 9 cross links (processed 111, took 0.00307771 sec) FOF: have done 2 cross links (processed 32, took 0.00300664 sec) FOF: have done 0 cross links (processed 4, took 0.00315927 sec) FOF: Local groups found. FOF: primary group finding took = 0.141607 sec FOF: Start finding nearest dm-particle (presently allocated=128.812 MB) FOF: fof-nearest iteration 1: need to repeat for 63779116 particles. (took = 0.0694051 sec) FOF: fof-nearest iteration 2: need to repeat for 53671248 particles. (took = 0.078834 sec) FOF: fof-nearest iteration 3: need to repeat for 29623285 particles. (took = 0.085397 sec) FOF: fof-nearest iteration 4: need to repeat for 8987676 particles. (took = 0.0586236 sec) FOF: fof-nearest iteration 5: need to repeat for 1210017 particles. (took = 0.0230599 sec) FOF: fof-nearest iteration 6: need to repeat for 27721 particles. (took = 0.00579973 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.326769 sec FOF: compiling local group data and catalogue took = 0.0171583 sec FOF: Total number of FOF groups with at least 32 particles: 804704 FOF: Largest FOF group has 168 particles. FOF: Total number of particles in FOF groups: 133829016 FOF: group properties are now allocated.. (presently allocated=119.884 MB) FOF: computation of group properties took = 0.00618242 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.148449 sec FOF: Finished computing FoF groups. Complete work took 0.836442 sec (presently allocated=116.606 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.585 MB) GRAVTREE: Tree construction done. took 0.351482 sec =87021.2 NTopnodes=34449 NTopleaves=30143 tree-build-scalability=0.604742 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133779961 particles. (took 0.649978 sec) SUBFIND: ngb iteration 2: need to repeat for 133755179 particles. (took 0.542908 sec) SUBFIND: ngb iteration 3: need to repeat for 133726574 particles. (took 0.482327 sec) SUBFIND: ngb iteration 4: need to repeat for 133707577 particles. (took 0.44651 sec) SUBFIND: ngb iteration 5: need to repeat for 133688721 particles. (took 0.43554 sec) SUBFIND: ngb iteration 6: need to repeat for 133675191 particles. (took 0.435084 sec) SUBFIND: ngb iteration 7: need to repeat for 133661269 particles. (took 0.440864 sec) SUBFIND: ngb iteration 8: need to repeat for 133649794 particles. (took 0.456852 sec) SUBFIND: ngb iteration 9: need to repeat for 133640452 particles. (took 0.478173 sec) SUBFIND: ngb iteration 10: need to repeat for 133625553 particles. (took 0.503486 sec) SUBFIND: ngb iteration 11: need to repeat for 133206494 particles. (took 0.532746 sec) SUBFIND: ngb iteration 12: need to repeat for 129103803 particles. (took 0.560168 sec) SUBFIND: ngb iteration 13: need to repeat for 119563853 particles. (took 0.570753 sec) SUBFIND: ngb iteration 14: need to repeat for 107022450 particles. (took 0.551517 sec) SUBFIND: ngb iteration 15: need to repeat for 94022031 particles. (took 0.51266 sec) SUBFIND: ngb iteration 16: need to repeat for 81786049 particles. (took 0.46576 sec) SUBFIND: ngb iteration 17: need to repeat for 69683916 particles. (took 0.411706 sec) SUBFIND: ngb iteration 18: need to repeat for 56633653 particles. (took 0.367099 sec) SUBFIND: ngb iteration 19: need to repeat for 42216603 particles. (took 0.315928 sec) SUBFIND: ngb iteration 20: need to repeat for 27647136 particles. (took 0.263709 sec) SUBFIND: ngb iteration 21: need to repeat for 15268433 particles. (took 0.193849 sec) SUBFIND: ngb iteration 22: need to repeat for 6794034 particles. (took 0.122627 sec) SUBFIND: ngb iteration 23: need to repeat for 2332402 particles. (took 0.0642756 sec) SUBFIND: ngb iteration 24: need to repeat for 586600 particles. (took 0.0271493 sec) SUBFIND: ngb iteration 25: need to repeat for 130095 particles. (took 0.00913544 sec) SUBFIND: ngb iteration 26: need to repeat for 55971 particles. (took 0.00257044 sec) SUBFIND: ngb iteration 27: need to repeat for 47572 particles. (took 0.00222598 sec) SUBFIND: ngb iteration 28: need to repeat for 45175 particles. (took 0.00229574 sec) SUBFIND: ngb iteration 29: need to repeat for 42813 particles. (took 0.00228951 sec) SUBFIND: ngb iteration 30: need to repeat for 39963 particles. (took 0.00206897 sec) SUBFIND: ngb iteration 31: need to repeat for 36552 particles. (took 0.0021522 sec) SUBFIND: ngb iteration 32: need to repeat for 32765 particles. (took 0.00202085 sec) SUBFIND: ngb iteration 33: need to repeat for 29142 particles. (took 0.00201139 sec) SUBFIND: ngb iteration 34: need to repeat for 25062 particles. (took 0.00238963 sec) SUBFIND: ngb iteration 35: need to repeat for 20449 particles. (took 0.00215917 sec) SUBFIND: ngb iteration 36: need to repeat for 15596 particles. (took 0.0018648 sec) SUBFIND: ngb iteration 37: need to repeat for 11463 particles. (took 0.00130223 sec) SUBFIND: ngb iteration 38: need to repeat for 7885 particles. (took 0.00112814 sec) SUBFIND: ngb iteration 39: need to repeat for 5095 particles. (took 0.00114786 sec) SUBFIND: ngb iteration 40: need to repeat for 2660 particles. (took 0.000926422 sec) SUBFIND: ngb iteration 41: need to repeat for 1188 particles. (took 0.000692077 sec) SUBFIND: ngb iteration 42: need to repeat for 511 particles. (took 0.000609082 sec) SUBFIND: ngb iteration 43: need to repeat for 120 particles. (took 0.000524617 sec) SUBFIND: ngb iteration 44: need to repeat for 43 particles. (took 0.000422468 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 9.87707 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133829016 particles, for threshold size factor 0.6) SUBFIND: The other 804704 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00293905 sec SUBFIND: particle balance=1.10671 SUBFIND: subfind_exchange() took 0.376722 sec SUBFIND: particle balance for processing=1.00014 SUBFIND: subdomain decomposition took 0.0695215 sec SUBFIND: serial subfind subdomain decomposition took 0.0686122 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1242 took 19.1567 sec SUBFIND: root-task=0: Serial processing of halo 0 took 19.3258 SUBFIND: Processing overall took (total time=19.8078 sec) SUBFIND: 0 out of 14511 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344213 ALLOCATE: Changing to MaxPartSph = 169225 SUBFIND: subfind_exchange() (for return to original CPU) took 0.407625 sec TREE: Full tree construction for all particles. (presently allocated=107.656 MB) GRAVTREE: Tree construction done. took 1.01497 sec =87021.2 NTopnodes=34449 NTopleaves=30143 tree-build-scalability=0.604742 SUBFIND: SO iteration 1: need to repeat for 804704 halo centers. (took 0.0170903 sec) SUBFIND: SO iteration 2: need to repeat for 804704 halo centers. (took 0.0156357 sec) SUBFIND: SO iteration 3: need to repeat for 804704 halo centers. (took 0.015464 sec) SUBFIND: SO iteration 4: need to repeat for 804704 halo centers. (took 0.0152218 sec) SUBFIND: SO iteration 5: need to repeat for 804704 halo centers. (took 0.0150169 sec) SUBFIND: SO iteration 6: need to repeat for 804704 halo centers. (took 0.0150175 sec) SUBFIND: SO iteration 7: need to repeat for 804704 halo centers. (took 0.014948 sec) SUBFIND: SO iteration 8: need to repeat for 804704 halo centers. (took 0.0149419 sec) SUBFIND: SO iteration 9: need to repeat for 804704 halo centers. (took 0.0150621 sec) SUBFIND: SO iteration 10: need to repeat for 804704 halo centers. (took 0.0149895 sec) SUBFIND: SO iteration 11: need to repeat for 804704 halo centers. (took 0.0150133 sec) SUBFIND: SO iteration 12: need to repeat for 804704 halo centers. (took 0.0149854 sec) SUBFIND: SO iteration 13: need to repeat for 804704 halo centers. (took 0.0150369 sec) SUBFIND: SO iteration 14: need to repeat for 804704 halo centers. (took 0.0150072 sec) SUBFIND: SO iteration 15: need to repeat for 804704 halo centers. (took 0.0150011 sec) SUBFIND: SO iteration 16: need to repeat for 15980 halo centers. (took 0.0147442 sec) SUBFIND: SO iteration 17: need to repeat for 118 halo centers. (took 0.00158758 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000191515 sec) SUBFIND: SO iteration 1: need to repeat for 804704 halo centers. (took 0.0150186 sec) SUBFIND: SO iteration 2: need to repeat for 804704 halo centers. (took 0.0146831 sec) SUBFIND: SO iteration 3: need to repeat for 804704 halo centers. (took 0.0149098 sec) SUBFIND: SO iteration 4: need to repeat for 804704 halo centers. (took 0.0149225 sec) SUBFIND: SO iteration 5: need to repeat for 804704 halo centers. (took 0.0148829 sec) SUBFIND: SO iteration 6: need to repeat for 804704 halo centers. (took 0.0149344 sec) SUBFIND: SO iteration 7: need to repeat for 804704 halo centers. (took 0.0149081 sec) SUBFIND: SO iteration 8: need to repeat for 804704 halo centers. (took 0.014894 sec) SUBFIND: SO iteration 9: need to repeat for 804704 halo centers. (took 0.014852 sec) SUBFIND: SO iteration 10: need to repeat for 804704 halo centers. (took 0.0148781 sec) SUBFIND: SO iteration 11: need to repeat for 804704 halo centers. (took 0.0150534 sec) SUBFIND: SO iteration 12: need to repeat for 804704 halo centers. (took 0.0150758 sec) SUBFIND: SO iteration 13: need to repeat for 804704 halo centers. (took 0.0151202 sec) SUBFIND: SO iteration 14: need to repeat for 804704 halo centers. (took 0.0155652 sec) SUBFIND: SO iteration 15: need to repeat for 804703 halo centers. (took 0.0152366 sec) SUBFIND: SO iteration 16: need to repeat for 7933 halo centers. (took 0.0150052 sec) SUBFIND: SO iteration 17: need to repeat for 43 halo centers. (took 0.000956452 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000205901 sec) SUBFIND: SO iteration 1: need to repeat for 804704 halo centers. (took 0.0151112 sec) SUBFIND: SO iteration 2: need to repeat for 804704 halo centers. (took 0.015424 sec) SUBFIND: SO iteration 3: need to repeat for 804704 halo centers. (took 0.0154927 sec) SUBFIND: SO iteration 4: need to repeat for 804704 halo centers. (took 0.0154685 sec) SUBFIND: SO iteration 5: need to repeat for 804704 halo centers. (took 0.0150873 sec) SUBFIND: SO iteration 6: need to repeat for 804704 halo centers. (took 0.0150141 sec) SUBFIND: SO iteration 7: need to repeat for 804704 halo centers. (took 0.0149716 sec) SUBFIND: SO iteration 8: need to repeat for 804704 halo centers. (took 0.0149722 sec) SUBFIND: SO iteration 9: need to repeat for 804704 halo centers. (took 0.0152793 sec) SUBFIND: SO iteration 10: need to repeat for 804704 halo centers. (took 0.0150182 sec) SUBFIND: SO iteration 11: need to repeat for 804704 halo centers. (took 0.0149745 sec) SUBFIND: SO iteration 12: need to repeat for 804704 halo centers. (took 0.0149891 sec) SUBFIND: SO iteration 13: need to repeat for 804704 halo centers. (took 0.0151218 sec) SUBFIND: SO iteration 14: need to repeat for 804704 halo centers. (took 0.0149858 sec) SUBFIND: SO iteration 15: need to repeat for 804704 halo centers. (took 0.0149498 sec) SUBFIND: SO iteration 16: need to repeat for 16292 halo centers. (took 0.0147375 sec) SUBFIND: SO iteration 17: need to repeat for 123 halo centers. (took 0.00160866 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000188212 sec) SUBFIND: SO iteration 1: need to repeat for 804704 halo centers. (took 0.0149359 sec) SUBFIND: SO iteration 2: need to repeat for 804704 halo centers. (took 0.0155217 sec) SUBFIND: SO iteration 3: need to repeat for 804704 halo centers. (took 0.0150906 sec) SUBFIND: SO iteration 4: need to repeat for 804704 halo centers. (took 0.0153744 sec) SUBFIND: SO iteration 5: need to repeat for 804704 halo centers. (took 0.0153137 sec) SUBFIND: SO iteration 6: need to repeat for 804704 halo centers. (took 0.0153382 sec) SUBFIND: SO iteration 7: need to repeat for 804704 halo centers. (took 0.0153649 sec) SUBFIND: SO iteration 8: need to repeat for 804704 halo centers. (took 0.0153403 sec) SUBFIND: SO iteration 9: need to repeat for 804704 halo centers. (took 0.0153345 sec) SUBFIND: SO iteration 10: need to repeat for 804704 halo centers. (took 0.0153378 sec) SUBFIND: SO iteration 11: need to repeat for 804704 halo centers. (took 0.0153724 sec) SUBFIND: SO iteration 12: need to repeat for 804704 halo centers. (took 0.0153456 sec) SUBFIND: SO iteration 13: need to repeat for 804704 halo centers. (took 0.0153125 sec) SUBFIND: SO iteration 14: need to repeat for 804704 halo centers. (took 0.0153499 sec) SUBFIND: SO iteration 15: need to repeat for 804704 halo centers. (took 0.0153123 sec) SUBFIND: SO iteration 16: need to repeat for 456653 halo centers. (took 0.0152886 sec) SUBFIND: SO iteration 17: need to repeat for 16177 halo centers. (took 0.0113587 sec) SUBFIND: SO iteration 18: need to repeat for 406 halo centers. (took 0.00154668 sec) SUBFIND: SO iteration 19: need to repeat for 1 halo centers. (took 0.000203338 sec) SUBFIND: determining spherical overdensity masses took 0.99066 sec SUBFIND: assembled and ordered groups and subhalos (took 0.161533 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.13281 sec, total size 303.813 MB, corresponds to effective I/O rate of 142.447 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.13382 sec SUBFIND: Finished with SUBFIND. (total time=35.1955 sec) SUBFIND: Total number of subhalos with at least 20 particles: 819180 SUBFIND: Largest subhalo has 168 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133829016 FOF: preparing output order of particles took 1.25149 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.27629 sec, total size 5347.61 MB, corresponds to effective I/O rate of 576.482 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 456 (rank 456 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.