TACC: Starting up job 4245022 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186311.18 Mb (on task= 540), Smallest = 186202.89 Mb (on task= 0), Average = 186280.88 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5183.99 Mb (on task= 0), Smallest = 5075.71 Mb (on task= 540), Average = 5106.00 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5183.99 Mb (on task= 0), Smallest = 5075.71 Mb (on task= 540), Average = 5106.00 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 577), Average = 95257.25 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-006.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.2291 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65811373 (tot= 65811373) masstab= 0 READIC: Type 1: 67901570 (tot= 67901570) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 115986 (tot= 115986) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.11085 sec, total size 6377.25 MB, corresponds to effective I/O rate of 1247.79 MB/sec READIC: Total number of particles : 133828929 INIT: Testing ID uniqueness... INIT: success. took=0.0601168 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: Increasing TopNodeAllocFactor=5.32333 new value=6.92033 DOMAIN: NTopleaves=30409, determination of top-level tree involved 6 iterations and took 0.487657 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=166 for nextra=75, reaching maximum imbalance of 1.10422|1.1043 DOMAIN: combining multiple-domains took 0.0148518 sec DOMAIN: exchange of 68017556 particles DOMAIN: particle exchange done. (took 0.305463 sec) DOMAIN: domain decomposition done. (took in total 0.815511 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0462342 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=116.164 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.112312 sec =67072.5 NTopnodes=34753 NTopleaves=30409 FOF: Start linking particles (presently allocated=128.694 MB) FOF: linking of small cells took 0.00127507 sec FOF: local links done (took 0.107474 sec, avg-work=0.0956263, imbalance=1.11708). FOF: Marked=172408 out of the 67901570 primaries which are linked FOF: begin linking across processors (presently allocated=129.965 MB) FOF: have done 10743 cross links (processed 172408, took 0.00450635 sec) FOF: have done 2817 cross links (processed 87054, took 0.00379558 sec) FOF: have done 541 cross links (processed 14133, took 0.00330299 sec) FOF: have done 105 cross links (processed 2437, took 0.00307875 sec) FOF: have done 17 cross links (processed 420, took 0.00303362 sec) FOF: have done 5 cross links (processed 107, took 0.00304087 sec) FOF: have done 1 cross links (processed 23, took 0.00301091 sec) FOF: have done 0 cross links (processed 2, took 0.00300902 sec) FOF: Local groups found. FOF: primary group finding took = 0.141783 sec FOF: Start finding nearest dm-particle (presently allocated=128.694 MB) FOF: fof-nearest iteration 1: need to repeat for 63785450 particles. (took = 0.0689072 sec) FOF: fof-nearest iteration 2: need to repeat for 53616963 particles. (took = 0.0787269 sec) FOF: fof-nearest iteration 3: need to repeat for 29485552 particles. (took = 0.0851759 sec) FOF: fof-nearest iteration 4: need to repeat for 8891163 particles. (took = 0.0588626 sec) FOF: fof-nearest iteration 5: need to repeat for 1190354 particles. (took = 0.0232207 sec) FOF: fof-nearest iteration 6: need to repeat for 27069 particles. (took = 0.00572782 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.326281 sec FOF: compiling local group data and catalogue took = 0.016833 sec FOF: Total number of FOF groups with at least 32 particles: 786313 FOF: Largest FOF group has 172 particles. FOF: Total number of particles in FOF groups: 133828929 FOF: group properties are now allocated.. (presently allocated=119.857 MB) FOF: computation of group properties took = 0.00618514 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.154425 sec FOF: Finished computing FoF groups. Complete work took 0.8388 sec (presently allocated=116.603 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.508 MB) GRAVTREE: Tree construction done. took 0.346649 sec =87066.8 NTopnodes=34753 NTopleaves=30409 tree-build-scalability=0.601463 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133800028 particles. (took 0.638582 sec) SUBFIND: ngb iteration 2: need to repeat for 133784493 particles. (took 0.537562 sec) SUBFIND: ngb iteration 3: need to repeat for 133769087 particles. (took 0.475835 sec) SUBFIND: ngb iteration 4: need to repeat for 133756624 particles. (took 0.44383 sec) SUBFIND: ngb iteration 5: need to repeat for 133744837 particles. (took 0.432489 sec) SUBFIND: ngb iteration 6: need to repeat for 133735435 particles. (took 0.429867 sec) SUBFIND: ngb iteration 7: need to repeat for 133727664 particles. (took 0.437162 sec) SUBFIND: ngb iteration 8: need to repeat for 133719955 particles. (took 0.453636 sec) SUBFIND: ngb iteration 9: need to repeat for 133713733 particles. (took 0.475011 sec) SUBFIND: ngb iteration 10: need to repeat for 133696843 particles. (took 0.499141 sec) SUBFIND: ngb iteration 11: need to repeat for 133186511 particles. (took 0.52746 sec) SUBFIND: ngb iteration 12: need to repeat for 128697943 particles. (took 0.55399 sec) SUBFIND: ngb iteration 13: need to repeat for 119122178 particles. (took 0.560882 sec) SUBFIND: ngb iteration 14: need to repeat for 106658544 particles. (took 0.542436 sec) SUBFIND: ngb iteration 15: need to repeat for 93859717 particles. (took 0.504295 sec) SUBFIND: ngb iteration 16: need to repeat for 81915846 particles. (took 0.461473 sec) SUBFIND: ngb iteration 17: need to repeat for 70157644 particles. (took 0.418428 sec) SUBFIND: ngb iteration 18: need to repeat for 57533587 particles. (took 0.370357 sec) SUBFIND: ngb iteration 19: need to repeat for 43481877 particles. (took 0.321898 sec) SUBFIND: ngb iteration 20: need to repeat for 28984252 particles. (took 0.267039 sec) SUBFIND: ngb iteration 21: need to repeat for 16368190 particles. (took 0.197943 sec) SUBFIND: ngb iteration 22: need to repeat for 7461665 particles. (took 0.128722 sec) SUBFIND: ngb iteration 23: need to repeat for 2630864 particles. (took 0.0714457 sec) SUBFIND: ngb iteration 24: need to repeat for 682073 particles. (took 0.0318812 sec) SUBFIND: ngb iteration 25: need to repeat for 141363 particles. (took 0.0112412 sec) SUBFIND: ngb iteration 26: need to repeat for 45335 particles. (took 0.00311882 sec) SUBFIND: ngb iteration 27: need to repeat for 34144 particles. (took 0.00156643 sec) SUBFIND: ngb iteration 28: need to repeat for 32274 particles. (took 0.00152476 sec) SUBFIND: ngb iteration 29: need to repeat for 30921 particles. (took 0.00136855 sec) SUBFIND: ngb iteration 30: need to repeat for 29064 particles. (took 0.00166332 sec) SUBFIND: ngb iteration 31: need to repeat for 26992 particles. (took 0.00218884 sec) SUBFIND: ngb iteration 32: need to repeat for 24568 particles. (took 0.00217619 sec) SUBFIND: ngb iteration 33: need to repeat for 21408 particles. (took 0.00212007 sec) SUBFIND: ngb iteration 34: need to repeat for 18207 particles. (took 0.00256568 sec) SUBFIND: ngb iteration 35: need to repeat for 14760 particles. (took 0.00247108 sec) SUBFIND: ngb iteration 36: need to repeat for 11566 particles. (took 0.00186898 sec) SUBFIND: ngb iteration 37: need to repeat for 8465 particles. (took 0.00157992 sec) SUBFIND: ngb iteration 38: need to repeat for 5755 particles. (took 0.00124947 sec) SUBFIND: ngb iteration 39: need to repeat for 3487 particles. (took 0.000931841 sec) SUBFIND: ngb iteration 40: need to repeat for 1960 particles. (took 0.00102864 sec) SUBFIND: ngb iteration 41: need to repeat for 937 particles. (took 0.000711789 sec) SUBFIND: ngb iteration 42: need to repeat for 420 particles. (took 0.000643365 sec) SUBFIND: ngb iteration 43: need to repeat for 130 particles. (took 0.000578132 sec) SUBFIND: ngb iteration 44: need to repeat for 39 particles. (took 0.000455191 sec) SUBFIND: ngb iteration 45: need to repeat for 1 particles. (took 0.000276256 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 9.82763 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828929 particles, for threshold size factor 0.6) SUBFIND: The other 786313 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00257364 sec SUBFIND: particle balance=1.10324 SUBFIND: subfind_exchange() took 0.376161 sec SUBFIND: particle balance for processing=1.00046 SUBFIND: subdomain decomposition took 0.0692043 sec SUBFIND: serial subfind subdomain decomposition took 0.0688389 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1214 took 18.7378 sec SUBFIND: root-task=0: Serial processing of halo 0 took 18.907 SUBFIND: Processing overall took (total time=19.2243 sec) SUBFIND: 0 out of 16578 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344211 ALLOCATE: Changing to MaxPartSph = 169268 SUBFIND: subfind_exchange() (for return to original CPU) took 0.409398 sec TREE: Full tree construction for all particles. (presently allocated=107.504 MB) GRAVTREE: Tree construction done. took 1.01424 sec =87066.8 NTopnodes=34753 NTopleaves=30409 tree-build-scalability=0.601463 SUBFIND: SO iteration 1: need to repeat for 786313 halo centers. (took 0.016945 sec) SUBFIND: SO iteration 2: need to repeat for 786313 halo centers. (took 0.0156681 sec) SUBFIND: SO iteration 3: need to repeat for 786313 halo centers. (took 0.0155462 sec) SUBFIND: SO iteration 4: need to repeat for 786313 halo centers. (took 0.0152226 sec) SUBFIND: SO iteration 5: need to repeat for 786313 halo centers. (took 0.0151142 sec) SUBFIND: SO iteration 6: need to repeat for 786313 halo centers. (took 0.0153192 sec) SUBFIND: SO iteration 7: need to repeat for 786313 halo centers. (took 0.0149011 sec) SUBFIND: SO iteration 8: need to repeat for 786313 halo centers. (took 0.0149847 sec) SUBFIND: SO iteration 9: need to repeat for 786313 halo centers. (took 0.0152076 sec) SUBFIND: SO iteration 10: need to repeat for 786313 halo centers. (took 0.0148563 sec) SUBFIND: SO iteration 11: need to repeat for 786313 halo centers. (took 0.0149254 sec) SUBFIND: SO iteration 12: need to repeat for 786313 halo centers. (took 0.0150165 sec) SUBFIND: SO iteration 13: need to repeat for 786313 halo centers. (took 0.0149615 sec) SUBFIND: SO iteration 14: need to repeat for 786313 halo centers. (took 0.0147957 sec) SUBFIND: SO iteration 15: need to repeat for 786313 halo centers. (took 0.014836 sec) SUBFIND: SO iteration 16: need to repeat for 15074 halo centers. (took 0.0145379 sec) SUBFIND: SO iteration 17: need to repeat for 101 halo centers. (took 0.00153043 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000197299 sec) SUBFIND: SO iteration 1: need to repeat for 786313 halo centers. (took 0.0147962 sec) SUBFIND: SO iteration 2: need to repeat for 786313 halo centers. (took 0.0144784 sec) SUBFIND: SO iteration 3: need to repeat for 786313 halo centers. (took 0.0147783 sec) SUBFIND: SO iteration 4: need to repeat for 786313 halo centers. (took 0.0147022 sec) SUBFIND: SO iteration 5: need to repeat for 786313 halo centers. (took 0.0147168 sec) SUBFIND: SO iteration 6: need to repeat for 786313 halo centers. (took 0.0147916 sec) SUBFIND: SO iteration 7: need to repeat for 786313 halo centers. (took 0.0146793 sec) SUBFIND: SO iteration 8: need to repeat for 786313 halo centers. (took 0.0147019 sec) SUBFIND: SO iteration 9: need to repeat for 786313 halo centers. (took 0.0147156 sec) SUBFIND: SO iteration 10: need to repeat for 786313 halo centers. (took 0.0147317 sec) SUBFIND: SO iteration 11: need to repeat for 786313 halo centers. (took 0.0146747 sec) SUBFIND: SO iteration 12: need to repeat for 786313 halo centers. (took 0.0147037 sec) SUBFIND: SO iteration 13: need to repeat for 786313 halo centers. (took 0.0147227 sec) SUBFIND: SO iteration 14: need to repeat for 786313 halo centers. (took 0.0147344 sec) SUBFIND: SO iteration 15: need to repeat for 786313 halo centers. (took 0.0147919 sec) SUBFIND: SO iteration 16: need to repeat for 7444 halo centers. (took 0.0145621 sec) SUBFIND: SO iteration 17: need to repeat for 34 halo centers. (took 0.000882843 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000202294 sec) SUBFIND: SO iteration 1: need to repeat for 786313 halo centers. (took 0.0148716 sec) SUBFIND: SO iteration 2: need to repeat for 786313 halo centers. (took 0.0151357 sec) SUBFIND: SO iteration 3: need to repeat for 786313 halo centers. (took 0.0151418 sec) SUBFIND: SO iteration 4: need to repeat for 786313 halo centers. (took 0.0148708 sec) SUBFIND: SO iteration 5: need to repeat for 786313 halo centers. (took 0.0147829 sec) SUBFIND: SO iteration 6: need to repeat for 786313 halo centers. (took 0.0147849 sec) SUBFIND: SO iteration 7: need to repeat for 786313 halo centers. (took 0.0149763 sec) SUBFIND: SO iteration 8: need to repeat for 786313 halo centers. (took 0.01505 sec) SUBFIND: SO iteration 9: need to repeat for 786313 halo centers. (took 0.015278 sec) SUBFIND: SO iteration 10: need to repeat for 786313 halo centers. (took 0.0153136 sec) SUBFIND: SO iteration 11: need to repeat for 786313 halo centers. (took 0.0150915 sec) SUBFIND: SO iteration 12: need to repeat for 786313 halo centers. (took 0.015571 sec) SUBFIND: SO iteration 13: need to repeat for 786313 halo centers. (took 0.0156097 sec) SUBFIND: SO iteration 14: need to repeat for 786313 halo centers. (took 0.0155371 sec) SUBFIND: SO iteration 15: need to repeat for 786313 halo centers. (took 0.0159806 sec) SUBFIND: SO iteration 16: need to repeat for 15361 halo centers. (took 0.0149124 sec) SUBFIND: SO iteration 17: need to repeat for 103 halo centers. (took 0.00177905 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000207995 sec) SUBFIND: SO iteration 1: need to repeat for 786313 halo centers. (took 0.0151869 sec) SUBFIND: SO iteration 2: need to repeat for 786313 halo centers. (took 0.0158931 sec) SUBFIND: SO iteration 3: need to repeat for 786313 halo centers. (took 0.0154036 sec) SUBFIND: SO iteration 4: need to repeat for 786313 halo centers. (took 0.0154773 sec) SUBFIND: SO iteration 5: need to repeat for 786313 halo centers. (took 0.0153047 sec) SUBFIND: SO iteration 6: need to repeat for 786313 halo centers. (took 0.0152806 sec) SUBFIND: SO iteration 7: need to repeat for 786313 halo centers. (took 0.01517 sec) SUBFIND: SO iteration 8: need to repeat for 786313 halo centers. (took 0.0151242 sec) SUBFIND: SO iteration 9: need to repeat for 786313 halo centers. (took 0.0153055 sec) SUBFIND: SO iteration 10: need to repeat for 786313 halo centers. (took 0.0152085 sec) SUBFIND: SO iteration 11: need to repeat for 786313 halo centers. (took 0.015161 sec) SUBFIND: SO iteration 12: need to repeat for 786313 halo centers. (took 0.0151241 sec) SUBFIND: SO iteration 13: need to repeat for 786313 halo centers. (took 0.0150899 sec) SUBFIND: SO iteration 14: need to repeat for 786313 halo centers. (took 0.0151567 sec) SUBFIND: SO iteration 15: need to repeat for 786313 halo centers. (took 0.0151245 sec) SUBFIND: SO iteration 16: need to repeat for 443707 halo centers. (took 0.01511 sec) SUBFIND: SO iteration 17: need to repeat for 15317 halo centers. (took 0.0112597 sec) SUBFIND: SO iteration 18: need to repeat for 348 halo centers. (took 0.00142313 sec) SUBFIND: determining spherical overdensity masses took 0.985844 sec SUBFIND: assembled and ordered groups and subhalos (took 0.161774 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.1399 sec, total size 297.366 MB, corresponds to effective I/O rate of 138.963 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.14091 sec SUBFIND: Finished with SUBFIND. (total time=34.5602 sec) SUBFIND: Total number of subhalos with at least 20 particles: 802869 SUBFIND: Largest subhalo has 172 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828929 FOF: preparing output order of particles took 1.24786 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.4137 sec, total size 5347.8 MB, corresponds to effective I/O rate of 568.087 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 60 (rank 60 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 402 (rank 402 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 59 (rank 59 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 439 (rank 439 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 178 (rank 178 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.