TACC: Starting up job 4245022 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 24 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 648 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186317.48 Mb (on task= 540), Smallest = 186201.63 Mb (on task= 0), Average = 186282.87 Mb Total Mem: Largest = 191386.89 Mb (on task= 27), Smallest = 191386.89 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5185.26 Mb (on task= 0), Smallest = 5069.41 Mb (on task= 540), Average = 5104.02 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5185.26 Mb (on task= 0), Smallest = 5069.41 Mb (on task= 540), Average = 5104.02 Mb avail /dev/shm: Largest = 95257.27 Mb (on task= 81), Smallest = 95257.20 Mb (on task= 384), Average = 95257.24 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-006.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.5531 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65767219 (tot= 65767219) masstab= 0 READIC: Type 1: 67882582 (tot= 67882582) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 179110 (tot= 179110) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 647. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.82464 sec, total size 6377.08 MB, corresponds to effective I/O rate of 1094.85 MB/sec READIC: Total number of particles : 133828911 INIT: Testing ID uniqueness... INIT: success. took=0.0608304 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: Increasing TopNodeAllocFactor=5.32333 new value=6.92033 DOMAIN: NTopleaves=30227, determination of top-level tree involved 5 iterations and took 0.492064 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=648, nnodes=24 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=174 for nextra=48, reaching maximum imbalance of 1.11154|1.112 DOMAIN: combining multiple-domains took 0.0160346 sec DOMAIN: exchange of 68061692 particles DOMAIN: particle exchange done. (took 0.299262 sec) DOMAIN: domain decomposition done. (took in total 0.815078 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0461555 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=116.14 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.115688 sec =65113.4 NTopnodes=34545 NTopleaves=30227 FOF: Start linking particles (presently allocated=128.471 MB) FOF: linking of small cells took 0.00127907 sec FOF: local links done (took 0.111523 sec, avg-work=0.0990039, imbalance=1.11627). FOF: Marked=172890 out of the 67882582 primaries which are linked FOF: begin linking across processors (presently allocated=129.729 MB) FOF: have done 10099 cross links (processed 172890, took 0.00450982 sec) FOF: have done 2792 cross links (processed 87094, took 0.00372491 sec) FOF: have done 477 cross links (processed 13706, took 0.0032205 sec) FOF: have done 134 cross links (processed 2598, took 0.00312701 sec) FOF: have done 25 cross links (processed 612, took 0.00304187 sec) FOF: have done 4 cross links (processed 83, took 0.00298135 sec) FOF: have done 1 cross links (processed 21, took 0.00301984 sec) FOF: have done 0 cross links (processed 2, took 0.00304427 sec) FOF: Local groups found. FOF: primary group finding took = 0.145705 sec FOF: Start finding nearest dm-particle (presently allocated=128.471 MB) FOF: fof-nearest iteration 1: need to repeat for 63692386 particles. (took = 0.0703131 sec) FOF: fof-nearest iteration 2: need to repeat for 53115426 particles. (took = 0.0806954 sec) FOF: fof-nearest iteration 3: need to repeat for 28533655 particles. (took = 0.0871694 sec) FOF: fof-nearest iteration 4: need to repeat for 8283396 particles. (took = 0.059317 sec) FOF: fof-nearest iteration 5: need to repeat for 1080782 particles. (took = 0.0221723 sec) FOF: fof-nearest iteration 6: need to repeat for 24316 particles. (took = 0.00566551 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.330923 sec FOF: compiling local group data and catalogue took = 0.0168998 sec FOF: Total number of FOF groups with at least 32 particles: 649923 FOF: Largest FOF group has 208 particles. FOF: Total number of particles in FOF groups: 133828911 FOF: group properties are now allocated.. (presently allocated=119.741 MB) FOF: computation of group properties took = 0.00589133 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.149911 sec FOF: Finished computing FoF groups. Complete work took 0.845292 sec (presently allocated=116.504 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=120.241 MB) GRAVTREE: Tree construction done. took 0.349079 sec =84764.6 NTopnodes=34545 NTopleaves=30227 tree-build-scalability=0.593089 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133828050 particles. (took 0.697223 sec) SUBFIND: ngb iteration 2: need to repeat for 133827274 particles. (took 0.587076 sec) SUBFIND: ngb iteration 3: need to repeat for 133826716 particles. (took 0.533511 sec) SUBFIND: ngb iteration 4: need to repeat for 133826374 particles. (took 0.504592 sec) SUBFIND: ngb iteration 5: need to repeat for 133825960 particles. (took 0.494658 sec) SUBFIND: ngb iteration 6: need to repeat for 133825695 particles. (took 0.496972 sec) SUBFIND: ngb iteration 7: need to repeat for 133825549 particles. (took 0.506695 sec) SUBFIND: ngb iteration 8: need to repeat for 133825348 particles. (took 0.525467 sec) SUBFIND: ngb iteration 9: need to repeat for 133824146 particles. (took 0.551657 sec) SUBFIND: ngb iteration 10: need to repeat for 133736260 particles. (took 0.581091 sec) SUBFIND: ngb iteration 11: need to repeat for 132009266 particles. (took 0.615 sec) SUBFIND: ngb iteration 12: need to repeat for 125492733 particles. (took 0.641186 sec) SUBFIND: ngb iteration 13: need to repeat for 115859960 particles. (took 0.64184 sec) SUBFIND: ngb iteration 14: need to repeat for 104190088 particles. (took 0.623412 sec) SUBFIND: ngb iteration 15: need to repeat for 92841032 particles. (took 0.588343 sec) SUBFIND: ngb iteration 16: need to repeat for 82721916 particles. (took 0.543731 sec) SUBFIND: ngb iteration 17: need to repeat for 73144246 particles. (took 0.496523 sec) SUBFIND: ngb iteration 18: need to repeat for 63234013 particles. (took 0.452236 sec) SUBFIND: ngb iteration 19: need to repeat for 52111267 particles. (took 0.404522 sec) SUBFIND: ngb iteration 20: need to repeat for 39426512 particles. (took 0.350413 sec) SUBFIND: ngb iteration 21: need to repeat for 26327653 particles. (took 0.282504 sec) SUBFIND: ngb iteration 22: need to repeat for 14755820 particles. (took 0.206546 sec) SUBFIND: ngb iteration 23: need to repeat for 6630465 particles. (took 0.131452 sec) SUBFIND: ngb iteration 24: need to repeat for 2233530 particles. (took 0.0709414 sec) SUBFIND: ngb iteration 25: need to repeat for 517072 particles. (took 0.0299659 sec) SUBFIND: ngb iteration 26: need to repeat for 77230 particles. (took 0.009568 sec) SUBFIND: ngb iteration 27: need to repeat for 8024 particles. (took 0.00217442 sec) SUBFIND: ngb iteration 28: need to repeat for 1813 particles. (took 0.000749575 sec) SUBFIND: ngb iteration 29: need to repeat for 1388 particles. (took 0.00104754 sec) SUBFIND: ngb iteration 30: need to repeat for 1317 particles. (took 0.00128272 sec) SUBFIND: ngb iteration 31: need to repeat for 1202 particles. (took 0.00126188 sec) SUBFIND: ngb iteration 32: need to repeat for 1013 particles. (took 0.000992356 sec) SUBFIND: ngb iteration 33: need to repeat for 898 particles. (took 0.000910318 sec) SUBFIND: ngb iteration 34: need to repeat for 771 particles. (took 0.00142203 sec) SUBFIND: ngb iteration 35: need to repeat for 590 particles. (took 0.00103617 sec) SUBFIND: ngb iteration 36: need to repeat for 492 particles. (took 0.000845291 sec) SUBFIND: ngb iteration 37: need to repeat for 337 particles. (took 0.000814641 sec) SUBFIND: ngb iteration 38: need to repeat for 185 particles. (took 0.000885798 sec) SUBFIND: ngb iteration 39: need to repeat for 107 particles. (took 0.000802764 sec) SUBFIND: ngb iteration 40: need to repeat for 58 particles. (took 0.000629015 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 11.587 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828911 particles, for threshold size factor 0.6) SUBFIND: The other 649923 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00253601 sec SUBFIND: particle balance=1.11092 SUBFIND: subfind_exchange() took 0.3764 sec SUBFIND: particle balance for processing=1.00004 SUBFIND: subdomain decomposition took 0.0692085 sec SUBFIND: serial subfind subdomain decomposition took 0.0682345 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1003 took 16.2144 sec SUBFIND: root-task=0: Serial processing of halo 0 took 16.383 SUBFIND: Processing overall took (total time=16.7042 sec) SUBFIND: 0 out of 39121 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 344213 ALLOCATE: Changing to MaxPartSph = 169155 SUBFIND: subfind_exchange() (for return to original CPU) took 0.412281 sec TREE: Full tree construction for all particles. (presently allocated=107.313 MB) GRAVTREE: Tree construction done. took 0.949965 sec =84764.6 NTopnodes=34545 NTopleaves=30227 tree-build-scalability=0.593089 SUBFIND: SO iteration 1: need to repeat for 649923 halo centers. (took 0.0158097 sec) SUBFIND: SO iteration 2: need to repeat for 649923 halo centers. (took 0.0145967 sec) SUBFIND: SO iteration 3: need to repeat for 649923 halo centers. (took 0.0143877 sec) SUBFIND: SO iteration 4: need to repeat for 649923 halo centers. (took 0.0141056 sec) SUBFIND: SO iteration 5: need to repeat for 649923 halo centers. (took 0.0139951 sec) SUBFIND: SO iteration 6: need to repeat for 649923 halo centers. (took 0.0140686 sec) SUBFIND: SO iteration 7: need to repeat for 649923 halo centers. (took 0.0143932 sec) SUBFIND: SO iteration 8: need to repeat for 649923 halo centers. (took 0.0148382 sec) SUBFIND: SO iteration 9: need to repeat for 649923 halo centers. (took 0.0147445 sec) SUBFIND: SO iteration 10: need to repeat for 649923 halo centers. (took 0.0145965 sec) SUBFIND: SO iteration 11: need to repeat for 649923 halo centers. (took 0.0144766 sec) SUBFIND: SO iteration 12: need to repeat for 649923 halo centers. (took 0.0144318 sec) SUBFIND: SO iteration 13: need to repeat for 649923 halo centers. (took 0.0147234 sec) SUBFIND: SO iteration 14: need to repeat for 649923 halo centers. (took 0.0143217 sec) SUBFIND: SO iteration 15: need to repeat for 649923 halo centers. (took 0.0141535 sec) SUBFIND: SO iteration 16: need to repeat for 9810 halo centers. (took 0.0145324 sec) SUBFIND: SO iteration 17: need to repeat for 61 halo centers. (took 0.00153416 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000192999 sec) SUBFIND: SO iteration 1: need to repeat for 649923 halo centers. (took 0.0141492 sec) SUBFIND: SO iteration 2: need to repeat for 649923 halo centers. (took 0.0143094 sec) SUBFIND: SO iteration 3: need to repeat for 649923 halo centers. (took 0.0139567 sec) SUBFIND: SO iteration 4: need to repeat for 649923 halo centers. (took 0.014029 sec) SUBFIND: SO iteration 5: need to repeat for 649923 halo centers. (took 0.0142696 sec) SUBFIND: SO iteration 6: need to repeat for 649923 halo centers. (took 0.0138944 sec) SUBFIND: SO iteration 7: need to repeat for 649923 halo centers. (took 0.0140167 sec) SUBFIND: SO iteration 8: need to repeat for 649923 halo centers. (took 0.0138264 sec) SUBFIND: SO iteration 9: need to repeat for 649923 halo centers. (took 0.0138387 sec) SUBFIND: SO iteration 10: need to repeat for 649923 halo centers. (took 0.0138273 sec) SUBFIND: SO iteration 11: need to repeat for 649923 halo centers. (took 0.0138449 sec) SUBFIND: SO iteration 12: need to repeat for 649923 halo centers. (took 0.013795 sec) SUBFIND: SO iteration 13: need to repeat for 649923 halo centers. (took 0.0138764 sec) SUBFIND: SO iteration 14: need to repeat for 649923 halo centers. (took 0.0138512 sec) SUBFIND: SO iteration 15: need to repeat for 649923 halo centers. (took 0.0139797 sec) SUBFIND: SO iteration 16: need to repeat for 4670 halo centers. (took 0.013738 sec) SUBFIND: SO iteration 17: need to repeat for 28 halo centers. (took 0.000676195 sec) SUBFIND: SO iteration 1: need to repeat for 649923 halo centers. (took 0.0139255 sec) SUBFIND: SO iteration 2: need to repeat for 649923 halo centers. (took 0.0144198 sec) SUBFIND: SO iteration 3: need to repeat for 649923 halo centers. (took 0.0144129 sec) SUBFIND: SO iteration 4: need to repeat for 649923 halo centers. (took 0.0140224 sec) SUBFIND: SO iteration 5: need to repeat for 649923 halo centers. (took 0.0139417 sec) SUBFIND: SO iteration 6: need to repeat for 649923 halo centers. (took 0.0140079 sec) SUBFIND: SO iteration 7: need to repeat for 649923 halo centers. (took 0.0139076 sec) SUBFIND: SO iteration 8: need to repeat for 649923 halo centers. (took 0.0139246 sec) SUBFIND: SO iteration 9: need to repeat for 649923 halo centers. (took 0.0142024 sec) SUBFIND: SO iteration 10: need to repeat for 649923 halo centers. (took 0.0140669 sec) SUBFIND: SO iteration 11: need to repeat for 649923 halo centers. (took 0.0142274 sec) SUBFIND: SO iteration 12: need to repeat for 649923 halo centers. (took 0.0138862 sec) SUBFIND: SO iteration 13: need to repeat for 649923 halo centers. (took 0.013913 sec) SUBFIND: SO iteration 14: need to repeat for 649923 halo centers. (took 0.0139074 sec) SUBFIND: SO iteration 15: need to repeat for 649923 halo centers. (took 0.0138981 sec) SUBFIND: SO iteration 16: need to repeat for 10011 halo centers. (took 0.0137382 sec) SUBFIND: SO iteration 17: need to repeat for 64 halo centers. (took 0.00108405 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000174528 sec) SUBFIND: SO iteration 1: need to repeat for 649923 halo centers. (took 0.0139008 sec) SUBFIND: SO iteration 2: need to repeat for 649923 halo centers. (took 0.0144941 sec) SUBFIND: SO iteration 3: need to repeat for 649923 halo centers. (took 0.0140046 sec) SUBFIND: SO iteration 4: need to repeat for 649923 halo centers. (took 0.0143706 sec) SUBFIND: SO iteration 5: need to repeat for 649923 halo centers. (took 0.0142755 sec) SUBFIND: SO iteration 6: need to repeat for 649923 halo centers. (took 0.0143423 sec) SUBFIND: SO iteration 7: need to repeat for 649923 halo centers. (took 0.014289 sec) SUBFIND: SO iteration 8: need to repeat for 649923 halo centers. (took 0.0143547 sec) SUBFIND: SO iteration 9: need to repeat for 649923 halo centers. (took 0.014327 sec) SUBFIND: SO iteration 10: need to repeat for 649923 halo centers. (took 0.0143082 sec) SUBFIND: SO iteration 11: need to repeat for 649923 halo centers. (took 0.014304 sec) SUBFIND: SO iteration 12: need to repeat for 649923 halo centers. (took 0.0143248 sec) SUBFIND: SO iteration 13: need to repeat for 649923 halo centers. (took 0.0143638 sec) SUBFIND: SO iteration 14: need to repeat for 649923 halo centers. (took 0.0143206 sec) SUBFIND: SO iteration 15: need to repeat for 649923 halo centers. (took 0.0143276 sec) SUBFIND: SO iteration 16: need to repeat for 357376 halo centers. (took 0.0142452 sec) SUBFIND: SO iteration 17: need to repeat for 9693 halo centers. (took 0.0105025 sec) SUBFIND: SO iteration 18: need to repeat for 160 halo centers. (took 0.00103579 sec) SUBFIND: determining spherical overdensity masses took 0.926524 sec SUBFIND: assembled and ordered groups and subhalos (took 0.157605 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 2.13027 sec, total size 251.015 MB, corresponds to effective I/O rate of 117.833 MB/sec SUBFIND: Subgroup catalogues saved. took = 2.1313 sec SUBFIND: Finished with SUBFIND. (total time=33.6699 sec) SUBFIND: Total number of subhalos with at least 20 particles: 688990 SUBFIND: Largest subhalo has 208 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828911 FOF: preparing output order of particles took 1.24499 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.26542 sec, total size 5347.3 MB, corresponds to effective I/O rate of 577.124 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 94 (rank 94 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 95 (rank 95 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.