TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186471.87 Mb (on task= 621), Smallest = 186390.20 Mb (on task= 432), Average = 186426.29 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5125.13 Mb (on task= 432), Smallest = 5043.46 Mb (on task= 621), Average = 5089.03 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5125.13 Mb (on task= 432), Smallest = 5043.46 Mb (on task= 621), Average = 5089.03 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 21), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 13.7753 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 61291396 (tot= 61291396) masstab= 0 READIC: Type 1: 72537264 (tot= 72537264) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 308 (tot= 308) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.74589 sec, total size 6360.01 MB, corresponds to effective I/O rate of 1340.11 MB/sec READIC: Total number of particles : 133828968 INIT: Testing ID uniqueness... INIT: success. took=0.0682728 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: NTopleaves=21463, determination of top-level tree involved 6 iterations and took 0.345456 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=192 for nextra=32, reaching maximum imbalance of 1.12542|1.12576 DOMAIN: combining multiple-domains took 0.0189224 sec DOMAIN: exchange of 72537572 particles DOMAIN: particle exchange done. (took 0.199804 sec) DOMAIN: domain decomposition done. (took in total 0.56987 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0315389 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=85.413 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0522522 sec =69757.4 NTopnodes=24529 NTopleaves=21463 FOF: Start linking particles (presently allocated=97.1213 MB) FOF: linking of small cells took 0.000666732 sec FOF: local links done (took 0.0693253 sec, avg-work=0.0609761, imbalance=1.12969). FOF: Marked=203659 out of the 72537264 primaries which are linked FOF: begin linking across processors (presently allocated=98.115 MB) FOF: have done 23293 cross links (processed 203659, took 0.00605939 sec) FOF: have done 4220 cross links (processed 101284, took 0.00568154 sec) FOF: have done 662 cross links (processed 13709, took 0.00439638 sec) FOF: have done 90 cross links (processed 2012, took 0.00291878 sec) FOF: have done 7 cross links (processed 256, took 0.00329711 sec) FOF: have done 0 cross links (processed 19, took 0.00328075 sec) FOF: Local groups found. FOF: primary group finding took = 0.100298 sec FOF: Start finding nearest dm-particle (presently allocated=97.1213 MB) FOF: fof-nearest iteration 1: need to repeat for 60390013 particles. (took = 0.0461565 sec) FOF: fof-nearest iteration 2: need to repeat for 55853125 particles. (took = 0.0487717 sec) FOF: fof-nearest iteration 3: need to repeat for 42079388 particles. (took = 0.0526805 sec) FOF: fof-nearest iteration 4: need to repeat for 21076506 particles. (took = 0.0475599 sec) FOF: fof-nearest iteration 5: need to repeat for 4505538 particles. (took = 0.029703 sec) FOF: fof-nearest iteration 6: need to repeat for 111576 particles. (took = 0.0116236 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.241438 sec FOF: compiling local group data and catalogue took = 0.0146955 sec FOF: Total number of FOF groups with at least 32 particles: 3846800 FOF: Largest FOF group has 70 particles. FOF: Total number of particles in FOF groups: 133828909 FOF: group properties are now allocated.. (presently allocated=89.3794 MB) FOF: computation of group properties took = 0.00926591 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.755326 sec FOF: Finished computing FoF groups. Complete work took 1.34917 sec (presently allocated=86.965 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.1688 MB) GRAVTREE: Tree construction done. took 0.274528 sec =86795.2 NTopnodes=24529 NTopleaves=21463 tree-build-scalability=0.717719 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 132224671 particles. (took 0.684143 sec) SUBFIND: ngb iteration 2: need to repeat for 129919520 particles. (took 0.501024 sec) SUBFIND: ngb iteration 3: need to repeat for 127104358 particles. (took 0.410248 sec) SUBFIND: ngb iteration 4: need to repeat for 123624011 particles. (took 0.346376 sec) SUBFIND: ngb iteration 5: need to repeat for 118743145 particles. (took 0.325461 sec) SUBFIND: ngb iteration 6: need to repeat for 110640688 particles. (took 0.309586 sec) SUBFIND: ngb iteration 7: need to repeat for 97140675 particles. (took 0.284913 sec) SUBFIND: ngb iteration 8: need to repeat for 80896997 particles. (took 0.239979 sec) SUBFIND: ngb iteration 9: need to repeat for 69219317 particles. (took 0.191292 sec) SUBFIND: ngb iteration 10: need to repeat for 63823577 particles. (took 0.146484 sec) SUBFIND: ngb iteration 11: need to repeat for 61996436 particles. (took 0.120615 sec) SUBFIND: ngb iteration 12: need to repeat for 61492224 particles. (took 0.1083 sec) SUBFIND: ngb iteration 13: need to repeat for 61359535 particles. (took 0.100971 sec) SUBFIND: ngb iteration 14: need to repeat for 61317070 particles. (took 0.0947836 sec) SUBFIND: ngb iteration 15: need to repeat for 61301080 particles. (took 0.0912548 sec) SUBFIND: ngb iteration 16: need to repeat for 61294776 particles. (took 0.0874548 sec) SUBFIND: ngb iteration 17: need to repeat for 61292402 particles. (took 0.0822604 sec) SUBFIND: ngb iteration 18: need to repeat for 61291572 particles. (took 0.0768075 sec) SUBFIND: ngb iteration 19: need to repeat for 61291070 particles. (took 0.0725135 sec) SUBFIND: ngb iteration 20: need to repeat for 61290314 particles. (took 0.0716999 sec) SUBFIND: ngb iteration 21: need to repeat for 61288074 particles. (took 0.0722608 sec) SUBFIND: ngb iteration 22: need to repeat for 61282777 particles. (took 0.0743664 sec) SUBFIND: ngb iteration 23: need to repeat for 61269037 particles. (took 0.0774018 sec) SUBFIND: ngb iteration 24: need to repeat for 61232442 particles. (took 0.0817388 sec) SUBFIND: ngb iteration 25: need to repeat for 61138675 particles. (took 0.0872662 sec) SUBFIND: ngb iteration 26: need to repeat for 60924186 particles. (took 0.0960544 sec) SUBFIND: ngb iteration 27: need to repeat for 60459191 particles. (took 0.108291 sec) SUBFIND: ngb iteration 28: need to repeat for 59565055 particles. (took 0.127032 sec) SUBFIND: ngb iteration 29: need to repeat for 58072934 particles. (took 0.151682 sec) SUBFIND: ngb iteration 30: need to repeat for 55862070 particles. (took 0.180459 sec) SUBFIND: ngb iteration 31: need to repeat for 52826266 particles. (took 0.206504 sec) SUBFIND: ngb iteration 32: need to repeat for 48896553 particles. (took 0.22691 sec) SUBFIND: ngb iteration 33: need to repeat for 43896214 particles. (took 0.228289 sec) SUBFIND: ngb iteration 34: need to repeat for 37721607 particles. (took 0.215562 sec) SUBFIND: ngb iteration 35: need to repeat for 30523221 particles. (took 0.19 sec) SUBFIND: ngb iteration 36: need to repeat for 22833379 particles. (took 0.159986 sec) SUBFIND: ngb iteration 37: need to repeat for 15475290 particles. (took 0.128459 sec) SUBFIND: ngb iteration 38: need to repeat for 9277735 particles. (took 0.0960521 sec) SUBFIND: ngb iteration 39: need to repeat for 4792790 particles. (took 0.0652974 sec) SUBFIND: ngb iteration 40: need to repeat for 2065534 particles. (took 0.0403715 sec) SUBFIND: ngb iteration 41: need to repeat for 715440 particles. (took 0.0216275 sec) SUBFIND: ngb iteration 42: need to repeat for 191752 particles. (took 0.0102112 sec) SUBFIND: ngb iteration 43: need to repeat for 37959 particles. (took 0.00436001 sec) SUBFIND: ngb iteration 44: need to repeat for 5584 particles. (took 0.00169345 sec) SUBFIND: ngb iteration 45: need to repeat for 561 particles. (took 0.000624649 sec) SUBFIND: ngb iteration 46: need to repeat for 18 particles. (took 0.000377582 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 7.00341 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828968 particles, for threshold size factor 0.6) SUBFIND: The other 3846800 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00641189 sec SUBFIND: particle balance=1.1251 SUBFIND: subfind_exchange() took 0.237492 sec SUBFIND: particle balance for processing=1.00038 SUBFIND: subdomain decomposition took 0.0512117 sec SUBFIND: serial subfind subdomain decomposition took 0.0508039 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=4453 took 44.467 sec SUBFIND: root-task=0: Serial processing of halo 0 took 44.5911 SUBFIND: Processing overall took (total time=49.0058 sec) SUBFIND: 0 out of 0 decisions, fraction -nan, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258161 ALLOCATE: Changing to MaxPartSph = 118233 SUBFIND: subfind_exchange() (for return to original CPU) took 1.9491 sec TREE: Full tree construction for all particles. (presently allocated=79.6467 MB) GRAVTREE: Tree construction done. took 0.821573 sec =86795.2 NTopnodes=24529 NTopleaves=21463 tree-build-scalability=0.717719 SUBFIND: SO iteration 1: need to repeat for 3846514 halo centers. (took 0.0359164 sec) SUBFIND: SO iteration 2: need to repeat for 3846514 halo centers. (took 0.0248152 sec) SUBFIND: SO iteration 3: need to repeat for 3846514 halo centers. (took 0.025224 sec) SUBFIND: SO iteration 4: need to repeat for 3846514 halo centers. (took 0.0254133 sec) SUBFIND: SO iteration 5: need to repeat for 3846514 halo centers. (took 0.0270789 sec) SUBFIND: SO iteration 6: need to repeat for 3846514 halo centers. (took 0.14765 sec) SUBFIND: SO iteration 7: need to repeat for 3846514 halo centers. (took 0.0637538 sec) SUBFIND: SO iteration 8: need to repeat for 3846514 halo centers. (took 0.0450409 sec) SUBFIND: SO iteration 9: need to repeat for 3846514 halo centers. (took 0.0365835 sec) SUBFIND: SO iteration 10: need to repeat for 3846514 halo centers. (took 0.0314721 sec) SUBFIND: SO iteration 11: need to repeat for 3846514 halo centers. (took 0.0343641 sec) SUBFIND: SO iteration 12: need to repeat for 3846514 halo centers. (took 0.0332052 sec) SUBFIND: SO iteration 13: need to repeat for 3846514 halo centers. (took 0.0282355 sec) SUBFIND: SO iteration 14: need to repeat for 3846514 halo centers. (took 0.0252347 sec) SUBFIND: SO iteration 15: need to repeat for 3846514 halo centers. (took 0.0253312 sec) SUBFIND: SO iteration 16: need to repeat for 570140 halo centers. (took 0.0257762 sec) SUBFIND: SO iteration 17: need to repeat for 15487 halo centers. (took 0.0107736 sec) SUBFIND: SO iteration 1: need to repeat for 3846514 halo centers. (took 0.0253493 sec) SUBFIND: SO iteration 2: need to repeat for 3846514 halo centers. (took 0.0247538 sec) SUBFIND: SO iteration 3: need to repeat for 3846514 halo centers. (took 0.0251246 sec) SUBFIND: SO iteration 4: need to repeat for 3846514 halo centers. (took 0.025086 sec) SUBFIND: SO iteration 5: need to repeat for 3846514 halo centers. (took 0.0252147 sec) SUBFIND: SO iteration 6: need to repeat for 3846514 halo centers. (took 0.0260198 sec) SUBFIND: SO iteration 7: need to repeat for 3846514 halo centers. (took 0.0250737 sec) SUBFIND: SO iteration 8: need to repeat for 3846514 halo centers. (took 0.0401625 sec) SUBFIND: SO iteration 9: need to repeat for 3846514 halo centers. (took 0.0488232 sec) SUBFIND: SO iteration 10: need to repeat for 3846514 halo centers. (took 0.0362167 sec) SUBFIND: SO iteration 11: need to repeat for 3846514 halo centers. (took 0.0336101 sec) SUBFIND: SO iteration 12: need to repeat for 3846514 halo centers. (took 0.0250551 sec) SUBFIND: SO iteration 13: need to repeat for 3846514 halo centers. (took 0.0270163 sec) SUBFIND: SO iteration 14: need to repeat for 3846514 halo centers. (took 0.0250312 sec) SUBFIND: SO iteration 15: need to repeat for 3846514 halo centers. (took 0.025048 sec) SUBFIND: SO iteration 16: need to repeat for 351568 halo centers. (took 0.0561701 sec) SUBFIND: SO iteration 17: need to repeat for 8838 halo centers. (took 0.0557352 sec) SUBFIND: SO iteration 1: need to repeat for 3846514 halo centers. (took 0.0815602 sec) SUBFIND: SO iteration 2: need to repeat for 3846514 halo centers. (took 0.0618535 sec) SUBFIND: SO iteration 3: need to repeat for 3846514 halo centers. (took 0.0345132 sec) SUBFIND: SO iteration 4: need to repeat for 3846514 halo centers. (took 0.0277344 sec) SUBFIND: SO iteration 5: need to repeat for 3846514 halo centers. (took 0.0343202 sec) SUBFIND: SO iteration 6: need to repeat for 3846514 halo centers. (took 0.0301761 sec) SUBFIND: SO iteration 7: need to repeat for 3846514 halo centers. (took 0.02577 sec) SUBFIND: SO iteration 8: need to repeat for 3846514 halo centers. (took 0.0253382 sec) SUBFIND: SO iteration 9: need to repeat for 3846514 halo centers. (took 0.0250559 sec) SUBFIND: SO iteration 10: need to repeat for 3846514 halo centers. (took 0.0249749 sec) SUBFIND: SO iteration 11: need to repeat for 3846514 halo centers. (took 0.0251809 sec) SUBFIND: SO iteration 12: need to repeat for 3846514 halo centers. (took 0.0250895 sec) SUBFIND: SO iteration 13: need to repeat for 3846514 halo centers. (took 0.0250148 sec) SUBFIND: SO iteration 14: need to repeat for 3846514 halo centers. (took 0.0249788 sec) SUBFIND: SO iteration 15: need to repeat for 3846514 halo centers. (took 0.0249879 sec) SUBFIND: SO iteration 16: need to repeat for 578414 halo centers. (took 0.057275 sec) SUBFIND: SO iteration 17: need to repeat for 15487 halo centers. (took 0.0295112 sec) SUBFIND: SO iteration 1: need to repeat for 3846514 halo centers. (took 0.0325563 sec) SUBFIND: SO iteration 2: need to repeat for 3846514 halo centers. (took 0.0375893 sec) SUBFIND: SO iteration 3: need to repeat for 3846514 halo centers. (took 0.0403338 sec) SUBFIND: SO iteration 4: need to repeat for 3846514 halo centers. (took 0.0446114 sec) SUBFIND: SO iteration 5: need to repeat for 3846514 halo centers. (took 0.0248515 sec) SUBFIND: SO iteration 6: need to repeat for 3846514 halo centers. (took 0.0263463 sec) SUBFIND: SO iteration 7: need to repeat for 3846514 halo centers. (took 0.0359118 sec) SUBFIND: SO iteration 8: need to repeat for 3846514 halo centers. (took 0.0398602 sec) SUBFIND: SO iteration 9: need to repeat for 3846514 halo centers. (took 0.0254689 sec) SUBFIND: SO iteration 10: need to repeat for 3846514 halo centers. (took 0.024693 sec) SUBFIND: SO iteration 11: need to repeat for 3846514 halo centers. (took 0.0242764 sec) SUBFIND: SO iteration 12: need to repeat for 3846514 halo centers. (took 0.0243166 sec) SUBFIND: SO iteration 13: need to repeat for 3846514 halo centers. (took 0.0243031 sec) SUBFIND: SO iteration 14: need to repeat for 3846514 halo centers. (took 0.024273 sec) SUBFIND: SO iteration 15: need to repeat for 3846514 halo centers. (took 0.0244325 sec) SUBFIND: SO iteration 16: need to repeat for 3494041 halo centers. (took 0.024635 sec) SUBFIND: SO iteration 17: need to repeat for 447897 halo centers. (took 0.0225781 sec) SUBFIND: SO iteration 18: need to repeat for 8408 halo centers. (took 0.0104911 sec) SUBFIND: determining spherical overdensity masses took 2.3044 sec SUBFIND: assembled and ordered groups and subhalos (took 0.425055 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 8.519 sec, total size 1438.03 MB, corresponds to effective I/O rate of 168.803 MB/sec SUBFIND: Subgroup catalogues saved. took = 8.52076 sec SUBFIND: Finished with SUBFIND. (total time=70.6602 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3846514 SUBFIND: Largest subhalo has 70 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133818714 FOF: preparing output order of particles took 0.931011 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.88307 sec, total size 5296.08 MB, corresponds to effective I/O rate of 596.199 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 153 (rank 153 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 142 (rank 142 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.