TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186474.34 Mb (on task= 297), Smallest = 186387.20 Mb (on task= 432), Average = 186423.63 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5128.14 Mb (on task= 432), Smallest = 5041.00 Mb (on task= 297), Average = 5091.69 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5128.14 Mb (on task= 432), Smallest = 5041.00 Mb (on task= 297), Average = 5091.69 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 15), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.6642 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 61311781 (tot= 61311781) masstab= 0 READIC: Type 1: 72516874 (tot= 72516874) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 292 (tot= 292) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.56427 sec, total size 6360.09 MB, corresponds to effective I/O rate of 1393.45 MB/sec READIC: Total number of particles : 133828947 INIT: Testing ID uniqueness... INIT: success. took=0.066924 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: NTopleaves=21463, determination of top-level tree involved 6 iterations and took 0.35133 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=194 for nextra=41, reaching maximum imbalance of 1.12834|1.12842 DOMAIN: combining multiple-domains took 0.0149925 sec DOMAIN: exchange of 72517166 particles DOMAIN: particle exchange done. (took 0.191665 sec) DOMAIN: domain decomposition done. (took in total 0.564002 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0320267 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=85.4199 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0502974 sec =69524.3 NTopnodes=24529 NTopleaves=21463 FOF: Start linking particles (presently allocated=97.1219 MB) FOF: linking of small cells took 0.000825468 sec FOF: local links done (took 0.0709196 sec, avg-work=0.0611158, imbalance=1.1397). FOF: Marked=202823 out of the 72516874 primaries which are linked FOF: begin linking across processors (presently allocated=98.1132 MB) FOF: have done 23159 cross links (processed 202823, took 0.0041649 sec) FOF: have done 4260 cross links (processed 100227, took 0.00339217 sec) FOF: have done 651 cross links (processed 13742, took 0.00269339 sec) FOF: have done 93 cross links (processed 2041, took 0.00247332 sec) FOF: have done 7 cross links (processed 277, took 0.00237407 sec) FOF: have done 0 cross links (processed 18, took 0.00233489 sec) FOF: Local groups found. FOF: primary group finding took = 0.0935668 sec FOF: Start finding nearest dm-particle (presently allocated=97.1219 MB) FOF: fof-nearest iteration 1: need to repeat for 60403060 particles. (took = 0.0454975 sec) FOF: fof-nearest iteration 2: need to repeat for 55844600 particles. (took = 0.0481602 sec) FOF: fof-nearest iteration 3: need to repeat for 42032002 particles. (took = 0.0514019 sec) FOF: fof-nearest iteration 4: need to repeat for 21006955 particles. (took = 0.0456037 sec) FOF: fof-nearest iteration 5: need to repeat for 4468721 particles. (took = 0.0281379 sec) FOF: fof-nearest iteration 6: need to repeat for 110355 particles. (took = 0.00930869 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.23235 sec FOF: compiling local group data and catalogue took = 0.0139596 sec FOF: Total number of FOF groups with at least 32 particles: 3802863 FOF: Largest FOF group has 72 particles. FOF: Total number of particles in FOF groups: 133828886 FOF: group properties are now allocated.. (presently allocated=89.3363 MB) FOF: computation of group properties took = 0.00872919 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.25573 sec FOF: Finished computing FoF groups. Complete work took 0.789632 sec (presently allocated=86.9363 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.1548 MB) GRAVTREE: Tree construction done. took 0.278946 sec =86527.5 NTopnodes=24529 NTopleaves=21463 tree-build-scalability=0.716846 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 131767966 particles. (took 0.98597 sec) SUBFIND: ngb iteration 2: need to repeat for 128921058 particles. (took 0.675461 sec) SUBFIND: ngb iteration 3: need to repeat for 125582987 particles. (took 0.487834 sec) SUBFIND: ngb iteration 4: need to repeat for 121736386 particles. (took 0.393486 sec) SUBFIND: ngb iteration 5: need to repeat for 116680692 particles. (took 0.344888 sec) SUBFIND: ngb iteration 6: need to repeat for 108656535 particles. (took 0.311355 sec) SUBFIND: ngb iteration 7: need to repeat for 95555313 particles. (took 0.276226 sec) SUBFIND: ngb iteration 8: need to repeat for 79973332 particles. (took 0.226825 sec) SUBFIND: ngb iteration 9: need to repeat for 68829632 particles. (took 0.175084 sec) SUBFIND: ngb iteration 10: need to repeat for 63680731 particles. (took 0.134207 sec) SUBFIND: ngb iteration 11: need to repeat for 61942468 particles. (took 0.110829 sec) SUBFIND: ngb iteration 12: need to repeat for 61473657 particles. (took 0.101282 sec) SUBFIND: ngb iteration 13: need to repeat for 61360333 particles. (took 0.0960107 sec) SUBFIND: ngb iteration 14: need to repeat for 61330297 particles. (took 0.0942126 sec) SUBFIND: ngb iteration 15: need to repeat for 61320203 particles. (took 0.0919281 sec) SUBFIND: ngb iteration 16: need to repeat for 61315896 particles. (took 0.0877599 sec) SUBFIND: ngb iteration 17: need to repeat for 61313777 particles. (took 0.082763 sec) SUBFIND: ngb iteration 18: need to repeat for 61312556 particles. (took 0.077129 sec) SUBFIND: ngb iteration 19: need to repeat for 61311550 particles. (took 0.0733124 sec) SUBFIND: ngb iteration 20: need to repeat for 61310283 particles. (took 0.0720524 sec) SUBFIND: ngb iteration 21: need to repeat for 61307350 particles. (took 0.0731278 sec) SUBFIND: ngb iteration 22: need to repeat for 61300314 particles. (took 0.0754194 sec) SUBFIND: ngb iteration 23: need to repeat for 61282657 particles. (took 0.0784438 sec) SUBFIND: ngb iteration 24: need to repeat for 61240077 particles. (took 0.0828027 sec) SUBFIND: ngb iteration 25: need to repeat for 61137213 particles. (took 0.0892617 sec) SUBFIND: ngb iteration 26: need to repeat for 60897191 particles. (took 0.0987819 sec) SUBFIND: ngb iteration 27: need to repeat for 60388540 particles. (took 0.111808 sec) SUBFIND: ngb iteration 28: need to repeat for 59409692 particles. (took 0.128733 sec) SUBFIND: ngb iteration 29: need to repeat for 57774529 particles. (took 0.150887 sec) SUBFIND: ngb iteration 30: need to repeat for 55358057 particles. (took 0.178494 sec) SUBFIND: ngb iteration 31: need to repeat for 52100550 particles. (took 0.204221 sec) SUBFIND: ngb iteration 32: need to repeat for 47973700 particles. (took 0.220696 sec) SUBFIND: ngb iteration 33: need to repeat for 42873375 particles. (took 0.223332 sec) SUBFIND: ngb iteration 34: need to repeat for 36699709 particles. (took 0.207755 sec) SUBFIND: ngb iteration 35: need to repeat for 29594604 particles. (took 0.183101 sec) SUBFIND: ngb iteration 36: need to repeat for 22067102 particles. (took 0.15394 sec) SUBFIND: ngb iteration 37: need to repeat for 14899884 particles. (took 0.122554 sec) SUBFIND: ngb iteration 38: need to repeat for 8899517 particles. (took 0.0906359 sec) SUBFIND: ngb iteration 39: need to repeat for 4578713 particles. (took 0.0608942 sec) SUBFIND: ngb iteration 40: need to repeat for 1966089 particles. (took 0.0366286 sec) SUBFIND: ngb iteration 41: need to repeat for 680297 particles. (took 0.0200818 sec) SUBFIND: ngb iteration 42: need to repeat for 185188 particles. (took 0.00990329 sec) SUBFIND: ngb iteration 43: need to repeat for 37101 particles. (took 0.00473896 sec) SUBFIND: ngb iteration 44: need to repeat for 5371 particles. (took 0.00172699 sec) SUBFIND: ngb iteration 45: need to repeat for 484 particles. (took 0.000601567 sec) SUBFIND: ngb iteration 46: need to repeat for 28 particles. (took 0.000434995 sec) SUBFIND: ngb iteration 47: need to repeat for 1 particles. (took 0.000585617 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 7.51268 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828947 particles, for threshold size factor 0.6) SUBFIND: The other 3802863 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00673838 sec SUBFIND: particle balance=1.12828 SUBFIND: subfind_exchange() took 0.237925 sec SUBFIND: particle balance for processing=1.00036 SUBFIND: subdomain decomposition took 0.0512647 sec SUBFIND: serial subfind subdomain decomposition took 0.0508379 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=4402 took 45.3852 sec SUBFIND: root-task=0: Serial processing of halo 0 took 45.5095 SUBFIND: Processing overall took (total time=46.1505 sec) SUBFIND: 0 out of 0 decisions, fraction -nan, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 118271 SUBFIND: subfind_exchange() (for return to original CPU) took 0.260248 sec TREE: Full tree construction for all particles. (presently allocated=79.5529 MB) GRAVTREE: Tree construction done. took 0.813922 sec =86527.5 NTopnodes=24529 NTopleaves=21463 tree-build-scalability=0.716846 SUBFIND: SO iteration 1: need to repeat for 3802572 halo centers. (took 0.027819 sec) SUBFIND: SO iteration 2: need to repeat for 3802572 halo centers. (took 0.0247574 sec) SUBFIND: SO iteration 3: need to repeat for 3802572 halo centers. (took 0.0249494 sec) SUBFIND: SO iteration 4: need to repeat for 3802572 halo centers. (took 0.0248268 sec) SUBFIND: SO iteration 5: need to repeat for 3802572 halo centers. (took 0.0248769 sec) SUBFIND: SO iteration 6: need to repeat for 3802572 halo centers. (took 0.0249071 sec) SUBFIND: SO iteration 7: need to repeat for 3802572 halo centers. (took 0.0248891 sec) SUBFIND: SO iteration 8: need to repeat for 3802572 halo centers. (took 0.0248611 sec) SUBFIND: SO iteration 9: need to repeat for 3802572 halo centers. (took 0.0248421 sec) SUBFIND: SO iteration 10: need to repeat for 3802572 halo centers. (took 0.0247793 sec) SUBFIND: SO iteration 11: need to repeat for 3802572 halo centers. (took 0.0248339 sec) SUBFIND: SO iteration 12: need to repeat for 3802572 halo centers. (took 0.0249895 sec) SUBFIND: SO iteration 13: need to repeat for 3802572 halo centers. (took 0.0250135 sec) SUBFIND: SO iteration 14: need to repeat for 3802572 halo centers. (took 0.0248128 sec) SUBFIND: SO iteration 15: need to repeat for 3802572 halo centers. (took 0.0260393 sec) SUBFIND: SO iteration 16: need to repeat for 557434 halo centers. (took 0.0247779 sec) SUBFIND: SO iteration 17: need to repeat for 14562 halo centers. (took 0.0117756 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00114463 sec) SUBFIND: SO iteration 1: need to repeat for 3802572 halo centers. (took 0.0256305 sec) SUBFIND: SO iteration 2: need to repeat for 3802572 halo centers. (took 0.0254392 sec) SUBFIND: SO iteration 3: need to repeat for 3802572 halo centers. (took 0.0255394 sec) SUBFIND: SO iteration 4: need to repeat for 3802572 halo centers. (took 0.0270651 sec) SUBFIND: SO iteration 5: need to repeat for 3802572 halo centers. (took 0.0255383 sec) SUBFIND: SO iteration 6: need to repeat for 3802572 halo centers. (took 0.0264696 sec) SUBFIND: SO iteration 7: need to repeat for 3802572 halo centers. (took 0.0256848 sec) SUBFIND: SO iteration 8: need to repeat for 3802572 halo centers. (took 0.0263702 sec) SUBFIND: SO iteration 9: need to repeat for 3802572 halo centers. (took 0.0254802 sec) SUBFIND: SO iteration 10: need to repeat for 3802572 halo centers. (took 0.0262701 sec) SUBFIND: SO iteration 11: need to repeat for 3802572 halo centers. (took 0.0277217 sec) SUBFIND: SO iteration 12: need to repeat for 3802572 halo centers. (took 0.0346712 sec) SUBFIND: SO iteration 13: need to repeat for 3802572 halo centers. (took 0.0266409 sec) SUBFIND: SO iteration 14: need to repeat for 3802572 halo centers. (took 0.0340824 sec) SUBFIND: SO iteration 15: need to repeat for 3802572 halo centers. (took 0.0266355 sec) SUBFIND: SO iteration 16: need to repeat for 345650 halo centers. (took 0.02504 sec) SUBFIND: SO iteration 17: need to repeat for 8415 halo centers. (took 0.00908125 sec) SUBFIND: SO iteration 1: need to repeat for 3802572 halo centers. (took 0.0251739 sec) SUBFIND: SO iteration 2: need to repeat for 3802572 halo centers. (took 0.0475495 sec) SUBFIND: SO iteration 3: need to repeat for 3802572 halo centers. (took 0.0252778 sec) SUBFIND: SO iteration 4: need to repeat for 3802572 halo centers. (took 0.0248309 sec) SUBFIND: SO iteration 5: need to repeat for 3802572 halo centers. (took 0.0262924 sec) SUBFIND: SO iteration 6: need to repeat for 3802572 halo centers. (took 0.0315897 sec) SUBFIND: SO iteration 7: need to repeat for 3802572 halo centers. (took 0.0309285 sec) SUBFIND: SO iteration 8: need to repeat for 3802572 halo centers. (took 0.026737 sec) SUBFIND: SO iteration 9: need to repeat for 3802572 halo centers. (took 0.0274763 sec) SUBFIND: SO iteration 10: need to repeat for 3802572 halo centers. (took 0.0261019 sec) SUBFIND: SO iteration 11: need to repeat for 3802572 halo centers. (took 0.02527 sec) SUBFIND: SO iteration 12: need to repeat for 3802572 halo centers. (took 0.0255919 sec) SUBFIND: SO iteration 13: need to repeat for 3802572 halo centers. (took 0.0272766 sec) SUBFIND: SO iteration 14: need to repeat for 3802572 halo centers. (took 0.0274683 sec) SUBFIND: SO iteration 15: need to repeat for 3802572 halo centers. (took 0.0271414 sec) SUBFIND: SO iteration 16: need to repeat for 566490 halo centers. (took 0.0271893 sec) SUBFIND: SO iteration 17: need to repeat for 14563 halo centers. (took 0.0118698 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.0014999 sec) SUBFIND: SO iteration 1: need to repeat for 3802572 halo centers. (took 0.0262852 sec) SUBFIND: SO iteration 2: need to repeat for 3802572 halo centers. (took 0.0290773 sec) SUBFIND: SO iteration 3: need to repeat for 3802572 halo centers. (took 0.0244962 sec) SUBFIND: SO iteration 4: need to repeat for 3802572 halo centers. (took 0.0275808 sec) SUBFIND: SO iteration 5: need to repeat for 3802572 halo centers. (took 0.0246364 sec) SUBFIND: SO iteration 6: need to repeat for 3802572 halo centers. (took 0.0319834 sec) SUBFIND: SO iteration 7: need to repeat for 3802572 halo centers. (took 0.0258076 sec) SUBFIND: SO iteration 8: need to repeat for 3802572 halo centers. (took 0.031027 sec) SUBFIND: SO iteration 9: need to repeat for 3802572 halo centers. (took 0.0379095 sec) SUBFIND: SO iteration 10: need to repeat for 3802572 halo centers. (took 0.0389169 sec) SUBFIND: SO iteration 11: need to repeat for 3802572 halo centers. (took 0.037867 sec) SUBFIND: SO iteration 12: need to repeat for 3802572 halo centers. (took 0.0270995 sec) SUBFIND: SO iteration 13: need to repeat for 3802572 halo centers. (took 0.0297405 sec) SUBFIND: SO iteration 14: need to repeat for 3802572 halo centers. (took 0.0290336 sec) SUBFIND: SO iteration 15: need to repeat for 3802572 halo centers. (took 0.0313484 sec) SUBFIND: SO iteration 16: need to repeat for 3452341 halo centers. (took 0.0249101 sec) SUBFIND: SO iteration 17: need to repeat for 436566 halo centers. (took 0.0223672 sec) SUBFIND: SO iteration 18: need to repeat for 10185 halo centers. (took 0.00997545 sec) SUBFIND: determining spherical overdensity masses took 1.84088 sec SUBFIND: assembled and ordered groups and subhalos (took 0.27814 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.67083 sec, total size 1421.6 MB, corresponds to effective I/O rate of 250.687 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.67298 sec SUBFIND: Finished with SUBFIND. (total time=63.0973 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3802572 SUBFIND: Largest subhalo has 72 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133818446 FOF: preparing output order of particles took 0.95067 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.33612 sec, total size 5296.31 MB, corresponds to effective I/O rate of 635.344 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 451 (rank 451 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 462 (rank 462 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 775 (rank 775 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 375 (rank 375 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.