TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186478.20 Mb (on task= 621), Smallest = 186402.66 Mb (on task= 270), Average = 186427.19 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5112.68 Mb (on task= 270), Smallest = 5037.14 Mb (on task= 621), Average = 5088.14 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5112.68 Mb (on task= 270), Smallest = 5037.14 Mb (on task= 621), Average = 5088.14 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 19), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c105-181.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.6492 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 61357822 (tot= 61357822) masstab= 0 READIC: Type 1: 72470827 (tot= 72470827) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 307 (tot= 307) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.64199 sec, total size 6360.26 MB, corresponds to effective I/O rate of 1370.16 MB/sec READIC: Total number of particles : 133828956 INIT: Testing ID uniqueness... INIT: success. took=0.0613942 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: NTopleaves=23150, determination of top-level tree involved 6 iterations and took 0.341935 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=194 for nextra=41, reaching maximum imbalance of 1.1281|1.12842 DOMAIN: combining multiple-domains took 0.0148359 sec DOMAIN: exchange of 72471134 particles DOMAIN: particle exchange done. (took 0.196513 sec) DOMAIN: domain decomposition done. (took in total 0.559004 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0314871 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=85.4648 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0524529 sec =71057.8 NTopnodes=26457 NTopleaves=23150 FOF: Start linking particles (presently allocated=97.1051 MB) FOF: linking of small cells took 0.000830185 sec FOF: local links done (took 0.0703965 sec, avg-work=0.0611893, imbalance=1.13435). FOF: Marked=198142 out of the 72470827 primaries which are linked FOF: begin linking across processors (presently allocated=98.0891 MB) FOF: have done 22619 cross links (processed 198142, took 0.00406865 sec) FOF: have done 4196 cross links (processed 99658, took 0.00327519 sec) FOF: have done 635 cross links (processed 13598, took 0.00273664 sec) FOF: have done 91 cross links (processed 2001, took 0.00243908 sec) FOF: have done 8 cross links (processed 240, took 0.002355 sec) FOF: have done 5 cross links (processed 20, took 0.00234925 sec) FOF: have done 0 cross links (processed 9, took 0.00230655 sec) FOF: Local groups found. FOF: primary group finding took = 0.0952373 sec FOF: Start finding nearest dm-particle (presently allocated=97.1051 MB) FOF: fof-nearest iteration 1: need to repeat for 60440938 particles. (took = 0.0457418 sec) FOF: fof-nearest iteration 2: need to repeat for 55846996 particles. (took = 0.0483361 sec) FOF: fof-nearest iteration 3: need to repeat for 41942743 particles. (took = 0.0518205 sec) FOF: fof-nearest iteration 4: need to repeat for 20841466 particles. (took = 0.0466399 sec) FOF: fof-nearest iteration 5: need to repeat for 4377530 particles. (took = 0.0281934 sec) FOF: fof-nearest iteration 6: need to repeat for 106648 particles. (took = 0.00922797 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.234079 sec FOF: compiling local group data and catalogue took = 0.0139303 sec FOF: Total number of FOF groups with at least 32 particles: 3717469 FOF: Largest FOF group has 72 particles. FOF: Total number of particles in FOF groups: 133828920 FOF: group properties are now allocated.. (presently allocated=89.3079 MB) FOF: computation of group properties took = 0.00850025 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.254834 sec FOF: Finished computing FoF groups. Complete work took 0.802221 sec (presently allocated=86.943 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.1602 MB) GRAVTREE: Tree construction done. took 0.286403 sec =88019.1 NTopnodes=26457 NTopleaves=23150 tree-build-scalability=0.699765 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 130544608 particles. (took 0.515117 sec) SUBFIND: ngb iteration 2: need to repeat for 126174082 particles. (took 0.414125 sec) SUBFIND: ngb iteration 3: need to repeat for 121416849 particles. (took 0.356505 sec) SUBFIND: ngb iteration 4: need to repeat for 116509569 particles. (took 0.313678 sec) SUBFIND: ngb iteration 5: need to repeat for 111000588 particles. (took 0.288966 sec) SUBFIND: ngb iteration 6: need to repeat for 103260988 particles. (took 0.271132 sec) SUBFIND: ngb iteration 7: need to repeat for 91372279 particles. (took 0.245974 sec) SUBFIND: ngb iteration 8: need to repeat for 77625522 particles. (took 0.204154 sec) SUBFIND: ngb iteration 9: need to repeat for 67887080 particles. (took 0.153612 sec) SUBFIND: ngb iteration 10: need to repeat for 63377145 particles. (took 0.115406 sec) SUBFIND: ngb iteration 11: need to repeat for 61859754 particles. (took 0.0980951 sec) SUBFIND: ngb iteration 12: need to repeat for 61462982 particles. (took 0.0945654 sec) SUBFIND: ngb iteration 13: need to repeat for 61378991 particles. (took 0.0949623 sec) SUBFIND: ngb iteration 14: need to repeat for 61362138 particles. (took 0.09393 sec) SUBFIND: ngb iteration 15: need to repeat for 61358857 particles. (took 0.091788 sec) SUBFIND: ngb iteration 16: need to repeat for 61358061 particles. (took 0.0878574 sec) SUBFIND: ngb iteration 17: need to repeat for 61357808 particles. (took 0.0826062 sec) SUBFIND: ngb iteration 18: need to repeat for 61357490 particles. (took 0.076915 sec) SUBFIND: ngb iteration 19: need to repeat for 61356573 particles. (took 0.0728053 sec) SUBFIND: ngb iteration 20: need to repeat for 61354380 particles. (took 0.0713293 sec) SUBFIND: ngb iteration 21: need to repeat for 61349854 particles. (took 0.0720267 sec) SUBFIND: ngb iteration 22: need to repeat for 61339628 particles. (took 0.0741112 sec) SUBFIND: ngb iteration 23: need to repeat for 61315375 particles. (took 0.0765798 sec) SUBFIND: ngb iteration 24: need to repeat for 61254087 particles. (took 0.0807352 sec) SUBFIND: ngb iteration 25: need to repeat for 61114535 particles. (took 0.0861849 sec) SUBFIND: ngb iteration 26: need to repeat for 60800655 particles. (took 0.0943561 sec) SUBFIND: ngb iteration 27: need to repeat for 60141924 particles. (took 0.107034 sec) SUBFIND: ngb iteration 28: need to repeat for 58899966 particles. (took 0.122482 sec) SUBFIND: ngb iteration 29: need to repeat for 56831978 particles. (took 0.144725 sec) SUBFIND: ngb iteration 30: need to repeat for 53809848 particles. (took 0.170276 sec) SUBFIND: ngb iteration 31: need to repeat for 49895747 particles. (took 0.195643 sec) SUBFIND: ngb iteration 32: need to repeat for 45246850 particles. (took 0.207417 sec) SUBFIND: ngb iteration 33: need to repeat for 39910342 particles. (took 0.204648 sec) SUBFIND: ngb iteration 34: need to repeat for 33810926 particles. (took 0.189458 sec) SUBFIND: ngb iteration 35: need to repeat for 27038081 particles. (took 0.165696 sec) SUBFIND: ngb iteration 36: need to repeat for 20035397 particles. (took 0.136208 sec) SUBFIND: ngb iteration 37: need to repeat for 13469802 particles. (took 0.108086 sec) SUBFIND: ngb iteration 38: need to repeat for 8022422 particles. (took 0.0796386 sec) SUBFIND: ngb iteration 39: need to repeat for 4124651 particles. (took 0.0530313 sec) SUBFIND: ngb iteration 40: need to repeat for 1775317 particles. (took 0.0327356 sec) SUBFIND: ngb iteration 41: need to repeat for 619867 particles. (took 0.017191 sec) SUBFIND: ngb iteration 42: need to repeat for 168793 particles. (took 0.0084543 sec) SUBFIND: ngb iteration 43: need to repeat for 34247 particles. (took 0.00377111 sec) SUBFIND: ngb iteration 44: need to repeat for 5306 particles. (took 0.00147294 sec) SUBFIND: ngb iteration 45: need to repeat for 605 particles. (took 0.000538858 sec) SUBFIND: ngb iteration 46: need to repeat for 35 particles. (took 0.000324726 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.18074 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828956 particles, for threshold size factor 0.6) SUBFIND: The other 3717469 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00620578 sec SUBFIND: particle balance=1.128 SUBFIND: subfind_exchange() took 0.236688 sec SUBFIND: particle balance for processing=1.00032 SUBFIND: subdomain decomposition took 0.0510208 sec SUBFIND: serial subfind subdomain decomposition took 0.0509545 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=4303 took 44.0743 sec SUBFIND: root-task=0: Serial processing of halo 0 took 44.1976 SUBFIND: Processing overall took (total time=46.9772 sec) SUBFIND: 0 out of 0 decisions, fraction -nan, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 118360 SUBFIND: subfind_exchange() (for return to original CPU) took 0.265122 sec TREE: Full tree construction for all particles. (presently allocated=79.3462 MB) GRAVTREE: Tree construction done. took 0.817994 sec =88019.1 NTopnodes=26457 NTopleaves=23150 tree-build-scalability=0.699765 SUBFIND: SO iteration 1: need to repeat for 3717184 halo centers. (took 0.0276752 sec) SUBFIND: SO iteration 2: need to repeat for 3717184 halo centers. (took 0.0245283 sec) SUBFIND: SO iteration 3: need to repeat for 3717184 halo centers. (took 0.0248554 sec) SUBFIND: SO iteration 4: need to repeat for 3717184 halo centers. (took 0.0250596 sec) SUBFIND: SO iteration 5: need to repeat for 3717184 halo centers. (took 0.0247827 sec) SUBFIND: SO iteration 6: need to repeat for 3717184 halo centers. (took 0.0284016 sec) SUBFIND: SO iteration 7: need to repeat for 3717184 halo centers. (took 0.0253573 sec) SUBFIND: SO iteration 8: need to repeat for 3717184 halo centers. (took 0.0250967 sec) SUBFIND: SO iteration 9: need to repeat for 3717184 halo centers. (took 0.0263945 sec) SUBFIND: SO iteration 10: need to repeat for 3717184 halo centers. (took 0.0273988 sec) SUBFIND: SO iteration 11: need to repeat for 3717184 halo centers. (took 0.0248554 sec) SUBFIND: SO iteration 12: need to repeat for 3717184 halo centers. (took 0.0252346 sec) SUBFIND: SO iteration 13: need to repeat for 3717184 halo centers. (took 0.0387246 sec) SUBFIND: SO iteration 14: need to repeat for 3717184 halo centers. (took 0.0247998 sec) SUBFIND: SO iteration 15: need to repeat for 3717184 halo centers. (took 0.0259949 sec) SUBFIND: SO iteration 16: need to repeat for 531694 halo centers. (took 0.024008 sec) SUBFIND: SO iteration 17: need to repeat for 12375 halo centers. (took 0.011643 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000987895 sec) SUBFIND: SO iteration 1: need to repeat for 3717184 halo centers. (took 0.0249246 sec) SUBFIND: SO iteration 2: need to repeat for 3717184 halo centers. (took 0.0244025 sec) SUBFIND: SO iteration 3: need to repeat for 3717184 halo centers. (took 0.0246947 sec) SUBFIND: SO iteration 4: need to repeat for 3717184 halo centers. (took 0.024848 sec) SUBFIND: SO iteration 5: need to repeat for 3717184 halo centers. (took 0.0247371 sec) SUBFIND: SO iteration 6: need to repeat for 3717184 halo centers. (took 0.0246647 sec) SUBFIND: SO iteration 7: need to repeat for 3717184 halo centers. (took 0.0248581 sec) SUBFIND: SO iteration 8: need to repeat for 3717184 halo centers. (took 0.0246901 sec) SUBFIND: SO iteration 9: need to repeat for 3717184 halo centers. (took 0.0249138 sec) SUBFIND: SO iteration 10: need to repeat for 3717184 halo centers. (took 0.0247049 sec) SUBFIND: SO iteration 11: need to repeat for 3717184 halo centers. (took 0.0248571 sec) SUBFIND: SO iteration 12: need to repeat for 3717184 halo centers. (took 0.0248752 sec) SUBFIND: SO iteration 13: need to repeat for 3717184 halo centers. (took 0.024641 sec) SUBFIND: SO iteration 14: need to repeat for 3717184 halo centers. (took 0.0247767 sec) SUBFIND: SO iteration 15: need to repeat for 3717184 halo centers. (took 0.0248187 sec) SUBFIND: SO iteration 16: need to repeat for 333056 halo centers. (took 0.0241093 sec) SUBFIND: SO iteration 17: need to repeat for 7465 halo centers. (took 0.00911163 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000683535 sec) SUBFIND: SO iteration 1: need to repeat for 3717184 halo centers. (took 0.0252993 sec) SUBFIND: SO iteration 2: need to repeat for 3717184 halo centers. (took 0.0246017 sec) SUBFIND: SO iteration 3: need to repeat for 3717184 halo centers. (took 0.0247536 sec) SUBFIND: SO iteration 4: need to repeat for 3717184 halo centers. (took 0.0247521 sec) SUBFIND: SO iteration 5: need to repeat for 3717184 halo centers. (took 0.0249691 sec) SUBFIND: SO iteration 6: need to repeat for 3717184 halo centers. (took 0.0247393 sec) SUBFIND: SO iteration 7: need to repeat for 3717184 halo centers. (took 0.0249077 sec) SUBFIND: SO iteration 8: need to repeat for 3717184 halo centers. (took 0.0250244 sec) SUBFIND: SO iteration 9: need to repeat for 3717184 halo centers. (took 0.0247451 sec) SUBFIND: SO iteration 10: need to repeat for 3717184 halo centers. (took 0.0246776 sec) SUBFIND: SO iteration 11: need to repeat for 3717184 halo centers. (took 0.0246517 sec) SUBFIND: SO iteration 12: need to repeat for 3717184 halo centers. (took 0.0250829 sec) SUBFIND: SO iteration 13: need to repeat for 3717184 halo centers. (took 0.0247749 sec) SUBFIND: SO iteration 14: need to repeat for 3717184 halo centers. (took 0.0246628 sec) SUBFIND: SO iteration 15: need to repeat for 3717184 halo centers. (took 0.0247186 sec) SUBFIND: SO iteration 16: need to repeat for 536738 halo centers. (took 0.0240608 sec) SUBFIND: SO iteration 17: need to repeat for 12381 halo centers. (took 0.0105911 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000975706 sec) SUBFIND: SO iteration 1: need to repeat for 3717184 halo centers. (took 0.0248471 sec) SUBFIND: SO iteration 2: need to repeat for 3717184 halo centers. (took 0.0244385 sec) SUBFIND: SO iteration 3: need to repeat for 3717184 halo centers. (took 0.0237187 sec) SUBFIND: SO iteration 4: need to repeat for 3717184 halo centers. (took 0.0241286 sec) SUBFIND: SO iteration 5: need to repeat for 3717184 halo centers. (took 0.0240794 sec) SUBFIND: SO iteration 6: need to repeat for 3717184 halo centers. (took 0.0241047 sec) SUBFIND: SO iteration 7: need to repeat for 3717184 halo centers. (took 0.0239544 sec) SUBFIND: SO iteration 8: need to repeat for 3717184 halo centers. (took 0.0248416 sec) SUBFIND: SO iteration 9: need to repeat for 3717184 halo centers. (took 0.0250823 sec) SUBFIND: SO iteration 10: need to repeat for 3717184 halo centers. (took 0.0246695 sec) SUBFIND: SO iteration 11: need to repeat for 3717184 halo centers. (took 0.0254347 sec) SUBFIND: SO iteration 12: need to repeat for 3717184 halo centers. (took 0.0247266 sec) SUBFIND: SO iteration 13: need to repeat for 3717184 halo centers. (took 0.0246613 sec) SUBFIND: SO iteration 14: need to repeat for 3717184 halo centers. (took 0.0251695 sec) SUBFIND: SO iteration 15: need to repeat for 3717184 halo centers. (took 0.0257485 sec) SUBFIND: SO iteration 16: need to repeat for 3362730 halo centers. (took 0.0254388 sec) SUBFIND: SO iteration 17: need to repeat for 417611 halo centers. (took 0.0223276 sec) SUBFIND: SO iteration 18: need to repeat for 13857 halo centers. (took 0.00979697 sec) SUBFIND: determining spherical overdensity masses took 1.683 sec SUBFIND: assembled and ordered groups and subhalos (took 0.268623 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.65193 sec, total size 1389.68 MB, corresponds to effective I/O rate of 245.877 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.65368 sec SUBFIND: Finished with SUBFIND. (total time=62.4238 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3717184 SUBFIND: Largest subhalo has 72 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133818421 FOF: preparing output order of particles took 0.958511 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.41093 sec, total size 5296.84 MB, corresponds to effective I/O rate of 629.756 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 430 (rank 430 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 741 (rank 741 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 747 (rank 747 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 733 (rank 733 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.