TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186468.62 Mb (on task= 297), Smallest = 186399.49 Mb (on task= 648), Average = 186424.70 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5115.84 Mb (on task= 648), Smallest = 5046.71 Mb (on task= 297), Average = 5090.62 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5115.84 Mb (on task= 648), Smallest = 5046.71 Mb (on task= 297), Average = 5090.62 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 17), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c107-134.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.1153 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 61550857 (tot= 61550857) masstab= 0 READIC: Type 1: 72277775 (tot= 72277775) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 344 (tot= 344) masstab= 0 READIC: Type 5: 1 (tot= 1) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.95993 sec, total size 6361 MB, corresponds to effective I/O rate of 1067.3 MB/sec READIC: Total number of particles : 133828977 INIT: Testing ID uniqueness... INIT: success. took=0.0621893 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: NTopleaves=25068, determination of top-level tree involved 6 iterations and took 0.359496 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=191 for nextra=26, reaching maximum imbalance of 1.12362|1.124 DOMAIN: combining multiple-domains took 0.0148894 sec DOMAIN: exchange of 72278120 particles DOMAIN: particle exchange done. (took 0.195616 sec) DOMAIN: domain decomposition done. (took in total 0.575681 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0306245 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=85.5692 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0528986 sec =71522.9 NTopnodes=28649 NTopleaves=25068 FOF: Start linking particles (presently allocated=97.1818 MB) FOF: linking of small cells took 0.000827331 sec FOF: local links done (took 0.0712411 sec, avg-work=0.061694, imbalance=1.13538). FOF: Marked=194280 out of the 72277775 primaries which are linked FOF: begin linking across processors (presently allocated=98.1655 MB) FOF: have done 21411 cross links (processed 194280, took 0.00417578 sec) FOF: have done 4159 cross links (processed 98548, took 0.00347433 sec) FOF: have done 686 cross links (processed 14134, took 0.00270406 sec) FOF: have done 85 cross links (processed 2145, took 0.00246285 sec) FOF: have done 16 cross links (processed 265, took 0.00251928 sec) FOF: have done 0 cross links (processed 41, took 0.00256003 sec) FOF: Local groups found. FOF: primary group finding took = 0.0942631 sec FOF: Start finding nearest dm-particle (presently allocated=97.1818 MB) FOF: fof-nearest iteration 1: need to repeat for 60585658 particles. (took = 0.0452439 sec) FOF: fof-nearest iteration 2: need to repeat for 55796966 particles. (took = 0.0479107 sec) FOF: fof-nearest iteration 3: need to repeat for 41475761 particles. (took = 0.0516719 sec) FOF: fof-nearest iteration 4: need to repeat for 20141058 particles. (took = 0.0456483 sec) FOF: fof-nearest iteration 5: need to repeat for 4030230 particles. (took = 0.0274906 sec) FOF: fof-nearest iteration 6: need to repeat for 96370 particles. (took = 0.00842948 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.230462 sec FOF: compiling local group data and catalogue took = 0.0135441 sec FOF: Total number of FOF groups with at least 32 particles: 3345049 FOF: Largest FOF group has 41 particles. FOF: Total number of particles in FOF groups: 133828942 FOF: group properties are now allocated.. (presently allocated=89.2527 MB) FOF: computation of group properties took = 0.00788057 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.258913 sec FOF: Finished computing FoF groups. Complete work took 0.797284 sec (presently allocated=86.8979 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.0943 MB) GRAVTREE: Tree construction done. took 0.213739 sec =88237 NTopnodes=28649 NTopleaves=25068 tree-build-scalability=0.675693 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 126607809 particles. (took 0.557059 sec) SUBFIND: ngb iteration 2: need to repeat for 117296146 particles. (took 0.418806 sec) SUBFIND: ngb iteration 3: need to repeat for 107906006 particles. (took 0.33219 sec) SUBFIND: ngb iteration 4: need to repeat for 99675525 particles. (took 0.270959 sec) SUBFIND: ngb iteration 5: need to repeat for 92903724 particles. (took 0.229908 sec) SUBFIND: ngb iteration 6: need to repeat for 86680757 particles. (took 0.202145 sec) SUBFIND: ngb iteration 7: need to repeat for 79606090 particles. (took 0.182687 sec) SUBFIND: ngb iteration 8: need to repeat for 72066252 particles. (took 0.163311 sec) SUBFIND: ngb iteration 9: need to repeat for 66351348 particles. (took 0.141312 sec) SUBFIND: ngb iteration 10: need to repeat for 63314296 particles. (took 0.123897 sec) SUBFIND: ngb iteration 11: need to repeat for 62102403 particles. (took 0.111537 sec) SUBFIND: ngb iteration 12: need to repeat for 61706643 particles. (took 0.104476 sec) SUBFIND: ngb iteration 13: need to repeat for 61593687 particles. (took 0.100831 sec) SUBFIND: ngb iteration 14: need to repeat for 61562726 particles. (took 0.0992265 sec) SUBFIND: ngb iteration 15: need to repeat for 61554221 particles. (took 0.0969727 sec) SUBFIND: ngb iteration 16: need to repeat for 61551723 particles. (took 0.0927987 sec) SUBFIND: ngb iteration 17: need to repeat for 61550760 particles. (took 0.0872737 sec) SUBFIND: ngb iteration 18: need to repeat for 61549447 particles. (took 0.0810425 sec) SUBFIND: ngb iteration 19: need to repeat for 61546923 particles. (took 0.076159 sec) SUBFIND: ngb iteration 20: need to repeat for 61541157 particles. (took 0.0744784 sec) SUBFIND: ngb iteration 21: need to repeat for 61528725 particles. (took 0.0748154 sec) SUBFIND: ngb iteration 22: need to repeat for 61499518 particles. (took 0.0765567 sec) SUBFIND: ngb iteration 23: need to repeat for 61435857 particles. (took 0.0784478 sec) SUBFIND: ngb iteration 24: need to repeat for 61297000 particles. (took 0.0818932 sec) SUBFIND: ngb iteration 25: need to repeat for 60990446 particles. (took 0.0862218 sec) SUBFIND: ngb iteration 26: need to repeat for 60340141 particles. (took 0.0931861 sec) SUBFIND: ngb iteration 27: need to repeat for 59018774 particles. (took 0.101802 sec) SUBFIND: ngb iteration 28: need to repeat for 56580245 particles. (took 0.11319 sec) SUBFIND: ngb iteration 29: need to repeat for 52586409 particles. (took 0.127143 sec) SUBFIND: ngb iteration 30: need to repeat for 47016163 particles. (took 0.140897 sec) SUBFIND: ngb iteration 31: need to repeat for 40316146 particles. (took 0.152226 sec) SUBFIND: ngb iteration 32: need to repeat for 33401587 particles. (took 0.155005 sec) SUBFIND: ngb iteration 33: need to repeat for 26978283 particles. (took 0.146653 sec) SUBFIND: ngb iteration 34: need to repeat for 21206226 particles. (took 0.127419 sec) SUBFIND: ngb iteration 35: need to repeat for 15972923 particles. (took 0.105231 sec) SUBFIND: ngb iteration 36: need to repeat for 11334498 particles. (took 0.0818355 sec) SUBFIND: ngb iteration 37: need to repeat for 7443527 particles. (took 0.0616174 sec) SUBFIND: ngb iteration 38: need to repeat for 4429153 particles. (took 0.0444358 sec) SUBFIND: ngb iteration 39: need to repeat for 2329775 particles. (took 0.0301274 sec) SUBFIND: ngb iteration 40: need to repeat for 1054252 particles. (took 0.0195323 sec) SUBFIND: ngb iteration 41: need to repeat for 397817 particles. (took 0.0112714 sec) SUBFIND: ngb iteration 42: need to repeat for 122297 particles. (took 0.0059938 sec) SUBFIND: ngb iteration 43: need to repeat for 29683 particles. (took 0.00282111 sec) SUBFIND: ngb iteration 44: need to repeat for 5650 particles. (took 0.00126975 sec) SUBFIND: ngb iteration 45: need to repeat for 757 particles. (took 0.000564611 sec) SUBFIND: ngb iteration 46: need to repeat for 66 particles. (took 0.000328589 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 5.47172 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828977 particles, for threshold size factor 0.6) SUBFIND: The other 3345049 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00579219 sec SUBFIND: particle balance=1.12349 SUBFIND: subfind_exchange() took 0.235206 sec SUBFIND: particle balance for processing=1.00011 SUBFIND: subdomain decomposition took 0.051382 sec SUBFIND: serial subfind subdomain decomposition took 0.050846 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3872 took 38.3372 sec SUBFIND: root-task=0: Serial processing of halo 0 took 38.4616 SUBFIND: Processing overall took (total time=42.5045 sec) SUBFIND: 0 out of 0 decisions, fraction -nan, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258161 ALLOCATE: Changing to MaxPartSph = 118733 SUBFIND: subfind_exchange() (for return to original CPU) took 0.257399 sec TREE: Full tree construction for all particles. (presently allocated=79.2736 MB) GRAVTREE: Tree construction done. took 0.84028 sec =88237 NTopnodes=28649 NTopleaves=25068 tree-build-scalability=0.675693 SUBFIND: SO iteration 1: need to repeat for 3344913 halo centers. (took 0.0264723 sec) SUBFIND: SO iteration 2: need to repeat for 3344913 halo centers. (took 0.023747 sec) SUBFIND: SO iteration 3: need to repeat for 3344913 halo centers. (took 0.0242724 sec) SUBFIND: SO iteration 4: need to repeat for 3344913 halo centers. (took 0.023559 sec) SUBFIND: SO iteration 5: need to repeat for 3344913 halo centers. (took 0.0236296 sec) SUBFIND: SO iteration 6: need to repeat for 3344913 halo centers. (took 0.0235573 sec) SUBFIND: SO iteration 7: need to repeat for 3344913 halo centers. (took 0.0235888 sec) SUBFIND: SO iteration 8: need to repeat for 3344913 halo centers. (took 0.0235317 sec) SUBFIND: SO iteration 9: need to repeat for 3344913 halo centers. (took 0.0235853 sec) SUBFIND: SO iteration 10: need to repeat for 3344913 halo centers. (took 0.0235181 sec) SUBFIND: SO iteration 11: need to repeat for 3344913 halo centers. (took 0.0234155 sec) SUBFIND: SO iteration 12: need to repeat for 3344913 halo centers. (took 0.0235379 sec) SUBFIND: SO iteration 13: need to repeat for 3344913 halo centers. (took 0.0238181 sec) SUBFIND: SO iteration 14: need to repeat for 3344913 halo centers. (took 0.0240454 sec) SUBFIND: SO iteration 15: need to repeat for 3344913 halo centers. (took 0.024363 sec) SUBFIND: SO iteration 16: need to repeat for 422831 halo centers. (took 0.024499 sec) SUBFIND: SO iteration 17: need to repeat for 6127 halo centers. (took 0.0108506 sec) SUBFIND: SO iteration 1: need to repeat for 3344913 halo centers. (took 0.0250141 sec) SUBFIND: SO iteration 2: need to repeat for 3344913 halo centers. (took 0.0244315 sec) SUBFIND: SO iteration 3: need to repeat for 3344913 halo centers. (took 0.0242332 sec) SUBFIND: SO iteration 4: need to repeat for 3344913 halo centers. (took 0.0245964 sec) SUBFIND: SO iteration 5: need to repeat for 3344913 halo centers. (took 0.0249206 sec) SUBFIND: SO iteration 6: need to repeat for 3344913 halo centers. (took 0.0241482 sec) SUBFIND: SO iteration 7: need to repeat for 3344913 halo centers. (took 0.0249904 sec) SUBFIND: SO iteration 8: need to repeat for 3344913 halo centers. (took 0.0240409 sec) SUBFIND: SO iteration 9: need to repeat for 3344913 halo centers. (took 0.0249363 sec) SUBFIND: SO iteration 10: need to repeat for 3344913 halo centers. (took 0.0236274 sec) SUBFIND: SO iteration 11: need to repeat for 3344913 halo centers. (took 0.0240292 sec) SUBFIND: SO iteration 12: need to repeat for 3344913 halo centers. (took 0.0240545 sec) SUBFIND: SO iteration 13: need to repeat for 3344913 halo centers. (took 0.0235532 sec) SUBFIND: SO iteration 14: need to repeat for 3344913 halo centers. (took 0.0235732 sec) SUBFIND: SO iteration 15: need to repeat for 3344913 halo centers. (took 0.0235107 sec) SUBFIND: SO iteration 16: need to repeat for 276156 halo centers. (took 0.0227948 sec) SUBFIND: SO iteration 17: need to repeat for 4694 halo centers. (took 0.00843428 sec) SUBFIND: SO iteration 1: need to repeat for 3344913 halo centers. (took 0.023603 sec) SUBFIND: SO iteration 2: need to repeat for 3344913 halo centers. (took 0.0232788 sec) SUBFIND: SO iteration 3: need to repeat for 3344913 halo centers. (took 0.0235166 sec) SUBFIND: SO iteration 4: need to repeat for 3344913 halo centers. (took 0.0233778 sec) SUBFIND: SO iteration 5: need to repeat for 3344913 halo centers. (took 0.0235081 sec) SUBFIND: SO iteration 6: need to repeat for 3344913 halo centers. (took 0.0233985 sec) SUBFIND: SO iteration 7: need to repeat for 3344913 halo centers. (took 0.0234492 sec) SUBFIND: SO iteration 8: need to repeat for 3344913 halo centers. (took 0.0234057 sec) SUBFIND: SO iteration 9: need to repeat for 3344913 halo centers. (took 0.0235579 sec) SUBFIND: SO iteration 10: need to repeat for 3344913 halo centers. (took 0.0234877 sec) SUBFIND: SO iteration 11: need to repeat for 3344913 halo centers. (took 0.0234136 sec) SUBFIND: SO iteration 12: need to repeat for 3344913 halo centers. (took 0.0235415 sec) SUBFIND: SO iteration 13: need to repeat for 3344913 halo centers. (took 0.0233909 sec) SUBFIND: SO iteration 14: need to repeat for 3344913 halo centers. (took 0.0234949 sec) SUBFIND: SO iteration 15: need to repeat for 3344913 halo centers. (took 0.0234339 sec) SUBFIND: SO iteration 16: need to repeat for 425529 halo centers. (took 0.022853 sec) SUBFIND: SO iteration 17: need to repeat for 6129 halo centers. (took 0.00983444 sec) SUBFIND: SO iteration 1: need to repeat for 3344913 halo centers. (took 0.0237088 sec) SUBFIND: SO iteration 2: need to repeat for 3344913 halo centers. (took 0.0231427 sec) SUBFIND: SO iteration 3: need to repeat for 3344913 halo centers. (took 0.0224667 sec) SUBFIND: SO iteration 4: need to repeat for 3344913 halo centers. (took 0.0228342 sec) SUBFIND: SO iteration 5: need to repeat for 3344913 halo centers. (took 0.0228828 sec) SUBFIND: SO iteration 6: need to repeat for 3344913 halo centers. (took 0.0229102 sec) SUBFIND: SO iteration 7: need to repeat for 3344913 halo centers. (took 0.0237411 sec) SUBFIND: SO iteration 8: need to repeat for 3344913 halo centers. (took 0.0239365 sec) SUBFIND: SO iteration 9: need to repeat for 3344913 halo centers. (took 0.023242 sec) SUBFIND: SO iteration 10: need to repeat for 3344913 halo centers. (took 0.0238013 sec) SUBFIND: SO iteration 11: need to repeat for 3344913 halo centers. (took 0.0232793 sec) SUBFIND: SO iteration 12: need to repeat for 3344913 halo centers. (took 0.0231942 sec) SUBFIND: SO iteration 13: need to repeat for 3344913 halo centers. (took 0.0234163 sec) SUBFIND: SO iteration 14: need to repeat for 3344913 halo centers. (took 0.0234621 sec) SUBFIND: SO iteration 15: need to repeat for 3344913 halo centers. (took 0.0228781 sec) SUBFIND: SO iteration 16: need to repeat for 3000456 halo centers. (took 0.0227847 sec) SUBFIND: SO iteration 17: need to repeat for 293543 halo centers. (took 0.020993 sec) SUBFIND: SO iteration 18: need to repeat for 38839 halo centers. (took 0.00839138 sec) SUBFIND: determining spherical overdensity masses took 1.58327 sec SUBFIND: assembled and ordered groups and subhalos (took 0.264368 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 21.9904 sec, total size 1250.49 MB, corresponds to effective I/O rate of 56.8651 MB/sec SUBFIND: Subgroup catalogues saved. took = 21.992 sec SUBFIND: Finished with SUBFIND. (total time=73.4138 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3344913 SUBFIND: Largest subhalo has 41 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133823336 FOF: preparing output order of particles took 0.869481 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.36716 sec, total size 5299.05 MB, corresponds to effective I/O rate of 633.315 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 371 (rank 371 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 380 (rank 380 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 372 (rank 372 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.