TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186478.13 Mb (on task= 621), Smallest = 186404.39 Mb (on task= 432), Average = 186427.72 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5110.95 Mb (on task= 432), Smallest = 5037.20 Mb (on task= 621), Average = 5087.61 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5110.95 Mb (on task= 432), Smallest = 5037.20 Mb (on task= 621), Average = 5087.61 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 19), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.862 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 61816880 (tot= 61816880) masstab= 0 READIC: Type 1: 72011606 (tot= 72011606) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 420 (tot= 420) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.47468 sec, total size 6362.01 MB, corresponds to effective I/O rate of 1421.78 MB/sec READIC: Total number of particles : 133828906 INIT: Testing ID uniqueness... INIT: success. took=0.0588734 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: NTopleaves=28596, determination of top-level tree involved 6 iterations and took 0.358933 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=188 for nextra=21, reaching maximum imbalance of 1.12165|1.12253 DOMAIN: combining multiple-domains took 0.0150454 sec DOMAIN: exchange of 72012026 particles DOMAIN: particle exchange done. (took 0.199326 sec) DOMAIN: domain decomposition done. (took in total 0.579053 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0316133 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=85.7262 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0527735 sec =73967.4 NTopnodes=32681 NTopleaves=28596 FOF: Start linking particles (presently allocated=97.3577 MB) FOF: linking of small cells took 0.00082418 sec FOF: local links done (took 0.0711082 sec, avg-work=0.0620884, imbalance=1.12734). FOF: Marked=186816 out of the 72011606 primaries which are linked FOF: begin linking across processors (presently allocated=98.355 MB) FOF: have done 19727 cross links (processed 186816, took 0.00441948 sec) FOF: have done 3892 cross links (processed 94676, took 0.00331504 sec) FOF: have done 619 cross links (processed 13198, took 0.00268935 sec) FOF: have done 87 cross links (processed 2041, took 0.00244501 sec) FOF: have done 3 cross links (processed 265, took 0.00239362 sec) FOF: have done 0 cross links (processed 8, took 0.00237338 sec) FOF: Local groups found. FOF: primary group finding took = 0.0939047 sec FOF: Start finding nearest dm-particle (presently allocated=97.3577 MB) FOF: fof-nearest iteration 1: need to repeat for 60808605 particles. (took = 0.0452529 sec) FOF: fof-nearest iteration 2: need to repeat for 55808747 particles. (took = 0.0480865 sec) FOF: fof-nearest iteration 3: need to repeat for 41045160 particles. (took = 0.0516272 sec) FOF: fof-nearest iteration 4: need to repeat for 19434577 particles. (took = 0.0453199 sec) FOF: fof-nearest iteration 5: need to repeat for 3713985 particles. (took = 0.02682 sec) FOF: fof-nearest iteration 6: need to repeat for 87095 particles. (took = 0.00815919 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.229292 sec FOF: compiling local group data and catalogue took = 0.0135627 sec FOF: Total number of FOF groups with at least 32 particles: 3039240 FOF: Largest FOF group has 88 particles. FOF: Total number of particles in FOF groups: 133828823 FOF: group properties are now allocated.. (presently allocated=89.2988 MB) FOF: computation of group properties took = 0.00756017 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.254253 sec FOF: Finished computing FoF groups. Complete work took 0.780669 sec (presently allocated=86.9388 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.124 MB) GRAVTREE: Tree construction done. took 0.210695 sec =90513.2 NTopnodes=32681 NTopleaves=28596 tree-build-scalability=0.639354 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 132268151 particles. (took 0.420758 sec) SUBFIND: ngb iteration 2: need to repeat for 130058966 particles. (took 0.356346 sec) SUBFIND: ngb iteration 3: need to repeat for 127435971 particles. (took 0.326286 sec) SUBFIND: ngb iteration 4: need to repeat for 124438644 particles. (took 0.303323 sec) SUBFIND: ngb iteration 5: need to repeat for 120559393 particles. (took 0.29051 sec) SUBFIND: ngb iteration 6: need to repeat for 114432712 particles. (took 0.283161 sec) SUBFIND: ngb iteration 7: need to repeat for 103886971 particles. (took 0.267622 sec) SUBFIND: ngb iteration 8: need to repeat for 88978292 particles. (took 0.238735 sec) SUBFIND: ngb iteration 9: need to repeat for 75131000 particles. (took 0.192165 sec) SUBFIND: ngb iteration 10: need to repeat for 66955839 particles. (took 0.14596 sec) SUBFIND: ngb iteration 11: need to repeat for 63471005 particles. (took 0.11782 sec) SUBFIND: ngb iteration 12: need to repeat for 62294204 particles. (took 0.107129 sec) SUBFIND: ngb iteration 13: need to repeat for 61950631 particles. (took 0.105134 sec) SUBFIND: ngb iteration 14: need to repeat for 61855069 particles. (took 0.104572 sec) SUBFIND: ngb iteration 15: need to repeat for 61828180 particles. (took 0.102112 sec) SUBFIND: ngb iteration 16: need to repeat for 61819903 particles. (took 0.0978042 sec) SUBFIND: ngb iteration 17: need to repeat for 61817247 particles. (took 0.0920187 sec) SUBFIND: ngb iteration 18: need to repeat for 61815789 particles. (took 0.0849336 sec) SUBFIND: ngb iteration 19: need to repeat for 61813403 particles. (took 0.0800101 sec) SUBFIND: ngb iteration 20: need to repeat for 61808981 particles. (took 0.0780307 sec) SUBFIND: ngb iteration 21: need to repeat for 61799882 particles. (took 0.0783023 sec) SUBFIND: ngb iteration 22: need to repeat for 61782934 particles. (took 0.079872 sec) SUBFIND: ngb iteration 23: need to repeat for 61746916 particles. (took 0.0820383 sec) SUBFIND: ngb iteration 24: need to repeat for 61669024 particles. (took 0.0852872 sec) SUBFIND: ngb iteration 25: need to repeat for 61508223 particles. (took 0.0893649 sec) SUBFIND: ngb iteration 26: need to repeat for 61184217 particles. (took 0.0949889 sec) SUBFIND: ngb iteration 27: need to repeat for 60570895 particles. (took 0.102706 sec) SUBFIND: ngb iteration 28: need to repeat for 59494435 particles. (took 0.114995 sec) SUBFIND: ngb iteration 29: need to repeat for 57785817 particles. (took 0.131771 sec) SUBFIND: ngb iteration 30: need to repeat for 55357948 particles. (took 0.150328 sec) SUBFIND: ngb iteration 31: need to repeat for 52235314 particles. (took 0.172035 sec) SUBFIND: ngb iteration 32: need to repeat for 48437970 particles. (took 0.188287 sec) SUBFIND: ngb iteration 33: need to repeat for 43915774 particles. (took 0.194726 sec) SUBFIND: ngb iteration 34: need to repeat for 38540694 particles. (took 0.186225 sec) SUBFIND: ngb iteration 35: need to repeat for 32316326 particles. (took 0.165856 sec) SUBFIND: ngb iteration 36: need to repeat for 25482442 particles. (took 0.14122 sec) SUBFIND: ngb iteration 37: need to repeat for 18564381 particles. (took 0.115955 sec) SUBFIND: ngb iteration 38: need to repeat for 12245919 particles. (took 0.091225 sec) SUBFIND: ngb iteration 39: need to repeat for 7141482 particles. (took 0.0664451 sec) SUBFIND: ngb iteration 40: need to repeat for 3576085 particles. (took 0.0446129 sec) SUBFIND: ngb iteration 41: need to repeat for 1494750 particles. (took 0.0266607 sec) SUBFIND: ngb iteration 42: need to repeat for 505030 particles. (took 0.0140344 sec) SUBFIND: ngb iteration 43: need to repeat for 130962 particles. (took 0.00668584 sec) SUBFIND: ngb iteration 44: need to repeat for 25861 particles. (took 0.00283457 sec) SUBFIND: ngb iteration 45: need to repeat for 3623 particles. (took 0.00108562 sec) SUBFIND: ngb iteration 46: need to repeat for 351 particles. (took 0.000474002 sec) SUBFIND: ngb iteration 47: need to repeat for 13 particles. (took 0.000320734 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.22683 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828906 particles, for threshold size factor 0.6) SUBFIND: The other 3039240 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0054004 sec SUBFIND: particle balance=1.12105 SUBFIND: subfind_exchange() took 0.234444 sec SUBFIND: particle balance for processing=1.00038 SUBFIND: subdomain decomposition took 0.0512265 sec SUBFIND: serial subfind subdomain decomposition took 0.0507451 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3518 took 34.5796 sec SUBFIND: root-task=0: Serial processing of halo 0 took 34.7036 SUBFIND: Processing overall took (total time=38.8765 sec) SUBFIND: 0 out of 280 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 119246 SUBFIND: subfind_exchange() (for return to original CPU) took 0.257095 sec TREE: Full tree construction for all particles. (presently allocated=79.3727 MB) GRAVTREE: Tree construction done. took 0.767896 sec =90513.2 NTopnodes=32681 NTopleaves=28596 tree-build-scalability=0.639354 SUBFIND: SO iteration 1: need to repeat for 3039153 halo centers. (took 0.0249502 sec) SUBFIND: SO iteration 2: need to repeat for 3039153 halo centers. (took 0.022375 sec) SUBFIND: SO iteration 3: need to repeat for 3039153 halo centers. (took 0.0225917 sec) SUBFIND: SO iteration 4: need to repeat for 3039153 halo centers. (took 0.0225322 sec) SUBFIND: SO iteration 5: need to repeat for 3039153 halo centers. (took 0.0225235 sec) SUBFIND: SO iteration 6: need to repeat for 3039153 halo centers. (took 0.0225377 sec) SUBFIND: SO iteration 7: need to repeat for 3039153 halo centers. (took 0.0224524 sec) SUBFIND: SO iteration 8: need to repeat for 3039153 halo centers. (took 0.0225013 sec) SUBFIND: SO iteration 9: need to repeat for 3039153 halo centers. (took 0.0225994 sec) SUBFIND: SO iteration 10: need to repeat for 3039153 halo centers. (took 0.0225128 sec) SUBFIND: SO iteration 11: need to repeat for 3039153 halo centers. (took 0.0227748 sec) SUBFIND: SO iteration 12: need to repeat for 3039153 halo centers. (took 0.0224785 sec) SUBFIND: SO iteration 13: need to repeat for 3039153 halo centers. (took 0.0225867 sec) SUBFIND: SO iteration 14: need to repeat for 3039153 halo centers. (took 0.0225421 sec) SUBFIND: SO iteration 15: need to repeat for 3039153 halo centers. (took 0.022586 sec) SUBFIND: SO iteration 16: need to repeat for 359613 halo centers. (took 0.0219326 sec) SUBFIND: SO iteration 17: need to repeat for 4187 halo centers. (took 0.00929014 sec) SUBFIND: SO iteration 1: need to repeat for 3039153 halo centers. (took 0.0227495 sec) SUBFIND: SO iteration 2: need to repeat for 3039153 halo centers. (took 0.0221701 sec) SUBFIND: SO iteration 3: need to repeat for 3039153 halo centers. (took 0.0225378 sec) SUBFIND: SO iteration 4: need to repeat for 3039153 halo centers. (took 0.0224821 sec) SUBFIND: SO iteration 5: need to repeat for 3039153 halo centers. (took 0.0225256 sec) SUBFIND: SO iteration 6: need to repeat for 3039153 halo centers. (took 0.0224945 sec) SUBFIND: SO iteration 7: need to repeat for 3039153 halo centers. (took 0.0224802 sec) SUBFIND: SO iteration 8: need to repeat for 3039153 halo centers. (took 0.0228667 sec) SUBFIND: SO iteration 9: need to repeat for 3039153 halo centers. (took 0.0226866 sec) SUBFIND: SO iteration 10: need to repeat for 3039153 halo centers. (took 0.0228288 sec) SUBFIND: SO iteration 11: need to repeat for 3039153 halo centers. (took 0.0226267 sec) SUBFIND: SO iteration 12: need to repeat for 3039153 halo centers. (took 0.0228232 sec) SUBFIND: SO iteration 13: need to repeat for 3039153 halo centers. (took 0.0226546 sec) SUBFIND: SO iteration 14: need to repeat for 3039153 halo centers. (took 0.0229215 sec) SUBFIND: SO iteration 15: need to repeat for 3039153 halo centers. (took 0.0224926 sec) SUBFIND: SO iteration 16: need to repeat for 216027 halo centers. (took 0.0223441 sec) SUBFIND: SO iteration 17: need to repeat for 2447 halo centers. (took 0.007405 sec) SUBFIND: SO iteration 1: need to repeat for 3039153 halo centers. (took 0.0226414 sec) SUBFIND: SO iteration 2: need to repeat for 3039153 halo centers. (took 0.0224196 sec) SUBFIND: SO iteration 3: need to repeat for 3039153 halo centers. (took 0.0225287 sec) SUBFIND: SO iteration 4: need to repeat for 3039153 halo centers. (took 0.0224739 sec) SUBFIND: SO iteration 5: need to repeat for 3039153 halo centers. (took 0.0224796 sec) SUBFIND: SO iteration 6: need to repeat for 3039153 halo centers. (took 0.0224998 sec) SUBFIND: SO iteration 7: need to repeat for 3039153 halo centers. (took 0.0225114 sec) SUBFIND: SO iteration 8: need to repeat for 3039153 halo centers. (took 0.0224563 sec) SUBFIND: SO iteration 9: need to repeat for 3039153 halo centers. (took 0.0225312 sec) SUBFIND: SO iteration 10: need to repeat for 3039153 halo centers. (took 0.0224468 sec) SUBFIND: SO iteration 11: need to repeat for 3039153 halo centers. (took 0.0225264 sec) SUBFIND: SO iteration 12: need to repeat for 3039153 halo centers. (took 0.0225002 sec) SUBFIND: SO iteration 13: need to repeat for 3039153 halo centers. (took 0.0224819 sec) SUBFIND: SO iteration 14: need to repeat for 3039153 halo centers. (took 0.0225436 sec) SUBFIND: SO iteration 15: need to repeat for 3039153 halo centers. (took 0.0224834 sec) SUBFIND: SO iteration 16: need to repeat for 362567 halo centers. (took 0.0218609 sec) SUBFIND: SO iteration 17: need to repeat for 4191 halo centers. (took 0.00931375 sec) SUBFIND: SO iteration 1: need to repeat for 3039153 halo centers. (took 0.0228212 sec) SUBFIND: SO iteration 2: need to repeat for 3039153 halo centers. (took 0.022995 sec) SUBFIND: SO iteration 3: need to repeat for 3039153 halo centers. (took 0.0224977 sec) SUBFIND: SO iteration 4: need to repeat for 3039153 halo centers. (took 0.0232263 sec) SUBFIND: SO iteration 5: need to repeat for 3039153 halo centers. (took 0.0234948 sec) SUBFIND: SO iteration 6: need to repeat for 3039153 halo centers. (took 0.0229434 sec) SUBFIND: SO iteration 7: need to repeat for 3039153 halo centers. (took 0.0235949 sec) SUBFIND: SO iteration 8: need to repeat for 3039153 halo centers. (took 0.0239339 sec) SUBFIND: SO iteration 9: need to repeat for 3039153 halo centers. (took 0.0241716 sec) SUBFIND: SO iteration 10: need to repeat for 3039153 halo centers. (took 0.0225416 sec) SUBFIND: SO iteration 11: need to repeat for 3039153 halo centers. (took 0.0231552 sec) SUBFIND: SO iteration 12: need to repeat for 3039153 halo centers. (took 0.0228364 sec) SUBFIND: SO iteration 13: need to repeat for 3039153 halo centers. (took 0.023629 sec) SUBFIND: SO iteration 14: need to repeat for 3039153 halo centers. (took 0.0223487 sec) SUBFIND: SO iteration 15: need to repeat for 3039153 halo centers. (took 0.0220353 sec) SUBFIND: SO iteration 16: need to repeat for 2693000 halo centers. (took 0.0219438 sec) SUBFIND: SO iteration 17: need to repeat for 212682 halo centers. (took 0.0200257 sec) SUBFIND: SO iteration 18: need to repeat for 30666 halo centers. (took 0.00729945 sec) SUBFIND: determining spherical overdensity masses took 1.51252 sec SUBFIND: assembled and ordered groups and subhalos (took 0.261145 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.64564 sec, total size 1136.23 MB, corresponds to effective I/O rate of 201.258 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.64725 sec SUBFIND: Finished with SUBFIND. (total time=54.042 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3039433 SUBFIND: Largest subhalo has 88 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133824772 FOF: preparing output order of particles took 0.942223 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.5649 sec, total size 5302.09 MB, corresponds to effective I/O rate of 619.049 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 504 (rank 504 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 512 (rank 512 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 529 (rank 529 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.