TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186472.34 Mb (on task= 297), Smallest = 186399.54 Mb (on task= 270), Average = 186426.39 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5115.79 Mb (on task= 270), Smallest = 5043.00 Mb (on task= 297), Average = 5088.93 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5115.79 Mb (on task= 270), Smallest = 5043.00 Mb (on task= 297), Average = 5088.93 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 23), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c105-181.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.3793 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 62117943 (tot= 62117943) masstab= 0 READIC: Type 1: 71710459 (tot= 71710459) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 572 (tot= 572) masstab= 0 READIC: Type 5: 1 (tot= 1) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 8.82078 sec, total size 6363.17 MB, corresponds to effective I/O rate of 721.384 MB/sec READIC: Total number of particles : 133828975 INIT: Testing ID uniqueness... INIT: success. took=0.0654478 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: NTopleaves=30920, determination of top-level tree involved 6 iterations and took 0.498084 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.11666|1.11683 DOMAIN: combining multiple-domains took 0.0537812 sec DOMAIN: exchange of 71711032 particles DOMAIN: particle exchange done. (took 0.234688 sec) DOMAIN: domain decomposition done. (took in total 0.792131 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0309573 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=85.8776 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0518014 sec =75076.8 NTopnodes=35337 NTopleaves=30920 FOF: Start linking particles (presently allocated=97.593 MB) FOF: linking of small cells took 0.000927011 sec FOF: local links done (took 0.0711616 sec, avg-work=0.0624463, imbalance=1.12385). FOF: Marked=177966 out of the 71710459 primaries which are linked FOF: begin linking across processors (presently allocated=98.6179 MB) FOF: have done 18411 cross links (processed 177966, took 0.00387808 sec) FOF: have done 3648 cross links (processed 90350, took 0.00321736 sec) FOF: have done 611 cross links (processed 12661, took 0.00261284 sec) FOF: have done 106 cross links (processed 2089, took 0.00242296 sec) FOF: have done 14 cross links (processed 329, took 0.00233341 sec) FOF: have done 1 cross links (processed 49, took 0.00231766 sec) FOF: have done 0 cross links (processed 2, took 0.00229903 sec) FOF: Local groups found. FOF: primary group finding took = 0.0956205 sec FOF: Start finding nearest dm-particle (presently allocated=97.593 MB) FOF: fof-nearest iteration 1: need to repeat for 61054538 particles. (took = 0.0455973 sec) FOF: fof-nearest iteration 2: need to repeat for 55809495 particles. (took = 0.0616115 sec) FOF: fof-nearest iteration 3: need to repeat for 40522297 particles. (took = 0.0537626 sec) FOF: fof-nearest iteration 4: need to repeat for 18660928 particles. (took = 0.045914 sec) FOF: fof-nearest iteration 5: need to repeat for 3416116 particles. (took = 0.026419 sec) FOF: fof-nearest iteration 6: need to repeat for 79737 particles. (took = 0.00775132 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.245141 sec FOF: compiling local group data and catalogue took = 0.0131485 sec FOF: Total number of FOF groups with at least 32 particles: 2754698 FOF: Largest FOF group has 98 particles. FOF: Total number of particles in FOF groups: 133828929 FOF: group properties are now allocated.. (presently allocated=89.4068 MB) FOF: computation of group properties took = 0.00703053 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.278912 sec FOF: Finished computing FoF groups. Complete work took 0.920437 sec (presently allocated=86.9982 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.1609 MB) GRAVTREE: Tree construction done. took 0.215765 sec =91454.8 NTopnodes=35337 NTopleaves=30920 tree-build-scalability=0.614059 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133512268 particles. (took 0.435781 sec) SUBFIND: ngb iteration 2: need to repeat for 132988412 particles. (took 0.3674 sec) SUBFIND: ngb iteration 3: need to repeat for 132145149 particles. (took 0.352377 sec) SUBFIND: ngb iteration 4: need to repeat for 130687758 particles. (took 0.348966 sec) SUBFIND: ngb iteration 5: need to repeat for 127993604 particles. (took 0.364938 sec) SUBFIND: ngb iteration 6: need to repeat for 122783006 particles. (took 0.31865 sec) SUBFIND: ngb iteration 7: need to repeat for 112852908 particles. (took 0.337006 sec) SUBFIND: ngb iteration 8: need to repeat for 97096144 particles. (took 0.279203 sec) SUBFIND: ngb iteration 9: need to repeat for 80435810 particles. (took 0.227045 sec) SUBFIND: ngb iteration 10: need to repeat for 69620760 particles. (took 0.179875 sec) SUBFIND: ngb iteration 11: need to repeat for 64679296 particles. (took 0.135037 sec) SUBFIND: ngb iteration 12: need to repeat for 62901659 particles. (took 0.118068 sec) SUBFIND: ngb iteration 13: need to repeat for 62348575 particles. (took 0.118804 sec) SUBFIND: ngb iteration 14: need to repeat for 62187681 particles. (took 0.11356 sec) SUBFIND: ngb iteration 15: need to repeat for 62139594 particles. (took 0.109248 sec) SUBFIND: ngb iteration 16: need to repeat for 62124549 particles. (took 0.135645 sec) SUBFIND: ngb iteration 17: need to repeat for 62119428 particles. (took 0.202451 sec) SUBFIND: ngb iteration 18: need to repeat for 62117142 particles. (took 0.183917 sec) SUBFIND: ngb iteration 19: need to repeat for 62114913 particles. (took 0.131095 sec) SUBFIND: ngb iteration 20: need to repeat for 62111704 particles. (took 0.110269 sec) SUBFIND: ngb iteration 21: need to repeat for 62106098 particles. (took 0.110186 sec) SUBFIND: ngb iteration 22: need to repeat for 62095231 particles. (took 0.146333 sec) SUBFIND: ngb iteration 23: need to repeat for 62074460 particles. (took 0.17848 sec) SUBFIND: ngb iteration 24: need to repeat for 62033854 particles. (took 0.220795 sec) SUBFIND: ngb iteration 25: need to repeat for 61959551 particles. (took 0.213284 sec) SUBFIND: ngb iteration 26: need to repeat for 61815046 particles. (took 0.227595 sec) SUBFIND: ngb iteration 27: need to repeat for 61557943 particles. (took 0.20432 sec) SUBFIND: ngb iteration 28: need to repeat for 61111059 particles. (took 0.116465 sec) SUBFIND: ngb iteration 29: need to repeat for 60376146 particles. (took 0.139442 sec) SUBFIND: ngb iteration 30: need to repeat for 59230345 particles. (took 0.155706 sec) SUBFIND: ngb iteration 31: need to repeat for 57511368 particles. (took 0.207667 sec) SUBFIND: ngb iteration 32: need to repeat for 55045148 particles. (took 0.208455 sec) SUBFIND: ngb iteration 33: need to repeat for 51583466 particles. (took 0.21871 sec) SUBFIND: ngb iteration 34: need to repeat for 46909356 particles. (took 0.272947 sec) SUBFIND: ngb iteration 35: need to repeat for 40922205 particles. (took 0.311853 sec) SUBFIND: ngb iteration 36: need to repeat for 33781358 particles. (took 0.233611 sec) SUBFIND: ngb iteration 37: need to repeat for 25946972 particles. (took 0.184036 sec) SUBFIND: ngb iteration 38: need to repeat for 18198651 particles. (took 0.134518 sec) SUBFIND: ngb iteration 39: need to repeat for 11392747 particles. (took 0.0996838 sec) SUBFIND: ngb iteration 40: need to repeat for 6185606 particles. (took 0.0694604 sec) SUBFIND: ngb iteration 41: need to repeat for 2834794 particles. (took 0.0453074 sec) SUBFIND: ngb iteration 42: need to repeat for 1054579 particles. (took 0.0238692 sec) SUBFIND: ngb iteration 43: need to repeat for 302890 particles. (took 0.0114446 sec) SUBFIND: ngb iteration 44: need to repeat for 66243 particles. (took 0.00497279 sec) SUBFIND: ngb iteration 45: need to repeat for 10038 particles. (took 0.00231782 sec) SUBFIND: ngb iteration 46: need to repeat for 969 particles. (took 0.000950944 sec) SUBFIND: ngb iteration 47: need to repeat for 46 particles. (took 0.000444813 sec) SUBFIND: ngb iteration 48: need to repeat for 2 particles. (took 0.00033702 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 8.31626 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828975 particles, for threshold size factor 0.6) SUBFIND: The other 2754698 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00551926 sec SUBFIND: particle balance=1.11617 SUBFIND: subfind_exchange() took 0.258503 sec SUBFIND: particle balance for processing=1.00053 SUBFIND: subdomain decomposition took 0.0514501 sec SUBFIND: serial subfind subdomain decomposition took 0.0509213 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3189 took 32.0743 sec SUBFIND: root-task=0: Serial processing of halo 0 took 32.1989 SUBFIND: Processing overall took (total time=34.8073 sec) SUBFIND: 0 out of 1201 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258161 ALLOCATE: Changing to MaxPartSph = 119826 SUBFIND: subfind_exchange() (for return to original CPU) took 0.292282 sec TREE: Full tree construction for all particles. (presently allocated=79.7505 MB) GRAVTREE: Tree construction done. took 0.792731 sec =91454.8 NTopnodes=35337 NTopleaves=30920 tree-build-scalability=0.614059 SUBFIND: SO iteration 1: need to repeat for 2754655 halo centers. (took 0.0627199 sec) SUBFIND: SO iteration 2: need to repeat for 2754655 halo centers. (took 0.0310529 sec) SUBFIND: SO iteration 3: need to repeat for 2754655 halo centers. (took 0.036914 sec) SUBFIND: SO iteration 4: need to repeat for 2754655 halo centers. (took 0.0421944 sec) SUBFIND: SO iteration 5: need to repeat for 2754655 halo centers. (took 0.0224156 sec) SUBFIND: SO iteration 6: need to repeat for 2754655 halo centers. (took 0.0230521 sec) SUBFIND: SO iteration 7: need to repeat for 2754655 halo centers. (took 0.0216428 sec) SUBFIND: SO iteration 8: need to repeat for 2754655 halo centers. (took 0.0216582 sec) SUBFIND: SO iteration 9: need to repeat for 2754655 halo centers. (took 0.022643 sec) SUBFIND: SO iteration 10: need to repeat for 2754655 halo centers. (took 0.0268052 sec) SUBFIND: SO iteration 11: need to repeat for 2754655 halo centers. (took 0.0254698 sec) SUBFIND: SO iteration 12: need to repeat for 2754655 halo centers. (took 0.0337282 sec) SUBFIND: SO iteration 13: need to repeat for 2754655 halo centers. (took 0.0221224 sec) SUBFIND: SO iteration 14: need to repeat for 2754655 halo centers. (took 0.0222446 sec) SUBFIND: SO iteration 15: need to repeat for 2754655 halo centers. (took 0.0216796 sec) SUBFIND: SO iteration 16: need to repeat for 298284 halo centers. (took 0.0214225 sec) SUBFIND: SO iteration 17: need to repeat for 2918 halo centers. (took 0.00907771 sec) SUBFIND: SO iteration 1: need to repeat for 2754655 halo centers. (took 0.0219443 sec) SUBFIND: SO iteration 2: need to repeat for 2754655 halo centers. (took 0.0218453 sec) SUBFIND: SO iteration 3: need to repeat for 2754655 halo centers. (took 0.024725 sec) SUBFIND: SO iteration 4: need to repeat for 2754655 halo centers. (took 0.0290906 sec) SUBFIND: SO iteration 5: need to repeat for 2754655 halo centers. (took 0.0387222 sec) SUBFIND: SO iteration 6: need to repeat for 2754655 halo centers. (took 0.0403811 sec) SUBFIND: SO iteration 7: need to repeat for 2754655 halo centers. (took 0.0274001 sec) SUBFIND: SO iteration 8: need to repeat for 2754655 halo centers. (took 0.0236497 sec) SUBFIND: SO iteration 9: need to repeat for 2754655 halo centers. (took 0.0231704 sec) SUBFIND: SO iteration 10: need to repeat for 2754655 halo centers. (took 0.0231992 sec) SUBFIND: SO iteration 11: need to repeat for 2754655 halo centers. (took 0.0216225 sec) SUBFIND: SO iteration 12: need to repeat for 2754655 halo centers. (took 0.0216815 sec) SUBFIND: SO iteration 13: need to repeat for 2754655 halo centers. (took 0.0215833 sec) SUBFIND: SO iteration 14: need to repeat for 2754655 halo centers. (took 0.0274295 sec) SUBFIND: SO iteration 15: need to repeat for 2754655 halo centers. (took 0.040232 sec) SUBFIND: SO iteration 16: need to repeat for 175633 halo centers. (took 0.028407 sec) SUBFIND: SO iteration 17: need to repeat for 1377 halo centers. (took 0.00926726 sec) SUBFIND: SO iteration 1: need to repeat for 2754655 halo centers. (took 0.0422754 sec) SUBFIND: SO iteration 2: need to repeat for 2754655 halo centers. (took 0.0250832 sec) SUBFIND: SO iteration 3: need to repeat for 2754655 halo centers. (took 0.0250638 sec) SUBFIND: SO iteration 4: need to repeat for 2754655 halo centers. (took 0.0216265 sec) SUBFIND: SO iteration 5: need to repeat for 2754655 halo centers. (took 0.0215284 sec) SUBFIND: SO iteration 6: need to repeat for 2754655 halo centers. (took 0.0266091 sec) SUBFIND: SO iteration 7: need to repeat for 2754655 halo centers. (took 0.0222071 sec) SUBFIND: SO iteration 8: need to repeat for 2754655 halo centers. (took 0.0216256 sec) SUBFIND: SO iteration 9: need to repeat for 2754655 halo centers. (took 0.022736 sec) SUBFIND: SO iteration 10: need to repeat for 2754655 halo centers. (took 0.0215976 sec) SUBFIND: SO iteration 11: need to repeat for 2754655 halo centers. (took 0.0276538 sec) SUBFIND: SO iteration 12: need to repeat for 2754655 halo centers. (took 0.0236079 sec) SUBFIND: SO iteration 13: need to repeat for 2754655 halo centers. (took 0.0215884 sec) SUBFIND: SO iteration 14: need to repeat for 2754655 halo centers. (took 0.0217338 sec) SUBFIND: SO iteration 15: need to repeat for 2754655 halo centers. (took 0.0229961 sec) SUBFIND: SO iteration 16: need to repeat for 302525 halo centers. (took 0.021374 sec) SUBFIND: SO iteration 17: need to repeat for 2946 halo centers. (took 0.00870104 sec) SUBFIND: SO iteration 1: need to repeat for 2754655 halo centers. (took 0.0228189 sec) SUBFIND: SO iteration 2: need to repeat for 2754655 halo centers. (took 0.0214313 sec) SUBFIND: SO iteration 3: need to repeat for 2754655 halo centers. (took 0.0288062 sec) SUBFIND: SO iteration 4: need to repeat for 2754655 halo centers. (took 0.0251162 sec) SUBFIND: SO iteration 5: need to repeat for 2754655 halo centers. (took 0.0219526 sec) SUBFIND: SO iteration 6: need to repeat for 2754655 halo centers. (took 0.0301637 sec) SUBFIND: SO iteration 7: need to repeat for 2754655 halo centers. (took 0.02708 sec) SUBFIND: SO iteration 8: need to repeat for 2754655 halo centers. (took 0.0302561 sec) SUBFIND: SO iteration 9: need to repeat for 2754655 halo centers. (took 0.0238493 sec) SUBFIND: SO iteration 10: need to repeat for 2754655 halo centers. (took 0.0218435 sec) SUBFIND: SO iteration 11: need to repeat for 2754655 halo centers. (took 0.0211717 sec) SUBFIND: SO iteration 12: need to repeat for 2754655 halo centers. (took 0.022852 sec) SUBFIND: SO iteration 13: need to repeat for 2754655 halo centers. (took 0.021147 sec) SUBFIND: SO iteration 14: need to repeat for 2754655 halo centers. (took 0.0211464 sec) SUBFIND: SO iteration 15: need to repeat for 2754655 halo centers. (took 0.0212352 sec) SUBFIND: SO iteration 16: need to repeat for 2405640 halo centers. (took 0.0307501 sec) SUBFIND: SO iteration 17: need to repeat for 168746 halo centers. (took 0.0229066 sec) SUBFIND: SO iteration 18: need to repeat for 20201 halo centers. (took 0.0169919 sec) SUBFIND: determining spherical overdensity masses took 1.74842 sec SUBFIND: assembled and ordered groups and subhalos (took 0.300991 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 9.53705 sec, total size 1030.06 MB, corresponds to effective I/O rate of 108.006 MB/sec SUBFIND: Subgroup catalogues saved. took = 9.53899 sec SUBFIND: Finished with SUBFIND. (total time=56.323 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2755854 SUBFIND: Largest subhalo has 98 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133826711 FOF: preparing output order of particles took 0.986663 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.38062 sec, total size 5305.54 MB, corresponds to effective I/O rate of 565.585 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 579 (rank 579 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 326 (rank 326 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 324 (rank 324 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 329 (rank 329 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 332 (rank 332 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.