TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186474.71 Mb (on task= 621), Smallest = 186392.88 Mb (on task= 432), Average = 186427.02 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5122.46 Mb (on task= 432), Smallest = 5040.62 Mb (on task= 621), Average = 5088.30 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5122.46 Mb (on task= 432), Smallest = 5040.62 Mb (on task= 621), Average = 5088.30 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 14), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.7219 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 62396077 (tot= 62396077) masstab= 0 READIC: Type 1: 71432141 (tot= 71432141) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 738 (tot= 738) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 105.042 sec, total size 6364.23 MB, corresponds to effective I/O rate of 60.5873 MB/sec READIC: Total number of particles : 133828956 INIT: Testing ID uniqueness... INIT: success. took=0.0605005 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32740, determination of top-level tree involved 6 iterations and took 0.38464 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=175 for nextra=125, reaching maximum imbalance of 1.11188|1.11203 DOMAIN: combining multiple-domains took 0.0156904 sec DOMAIN: exchange of 71432879 particles DOMAIN: particle exchange done. (took 0.205957 sec) DOMAIN: domain decomposition done. (took in total 0.612062 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.032664 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.0113 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0536497 sec =75814.2 NTopnodes=37417 NTopleaves=32740 FOF: Start linking particles (presently allocated=97.7459 MB) FOF: linking of small cells took 0.000996772 sec FOF: local links done (took 0.070883 sec, avg-work=0.0628583, imbalance=1.12103). FOF: Marked=176363 out of the 71432141 primaries which are linked FOF: begin linking across processors (presently allocated=98.7786 MB) FOF: have done 17621 cross links (processed 176363, took 0.00401764 sec) FOF: have done 3532 cross links (processed 90231, took 0.00317178 sec) FOF: have done 572 cross links (processed 12530, took 0.00272187 sec) FOF: have done 61 cross links (processed 2014, took 0.00248421 sec) FOF: have done 11 cross links (processed 173, took 0.00239944 sec) FOF: have done 1 cross links (processed 28, took 0.00249726 sec) FOF: have done 0 cross links (processed 3, took 0.00232554 sec) FOF: Local groups found. FOF: primary group finding took = 0.096109 sec FOF: Start finding nearest dm-particle (presently allocated=97.7459 MB) FOF: fof-nearest iteration 1: need to repeat for 61282503 particles. (took = 0.0457831 sec) FOF: fof-nearest iteration 2: need to repeat for 55807372 particles. (took = 0.0494427 sec) FOF: fof-nearest iteration 3: need to repeat for 40047008 particles. (took = 0.0532851 sec) FOF: fof-nearest iteration 4: need to repeat for 17974064 particles. (took = 0.0461831 sec) FOF: fof-nearest iteration 5: need to repeat for 3184117 particles. (took = 0.0261768 sec) FOF: fof-nearest iteration 6: need to repeat for 73414 particles. (took = 0.00743993 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.232438 sec FOF: compiling local group data and catalogue took = 0.0131083 sec FOF: Total number of FOF groups with at least 32 particles: 2546215 FOF: Largest FOF group has 105 particles. FOF: Total number of particles in FOF groups: 133828894 FOF: group properties are now allocated.. (presently allocated=89.4847 MB) FOF: computation of group properties took = 0.00678948 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.245653 sec FOF: Finished computing FoF groups. Complete work took 0.776574 sec (presently allocated=87.0599 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.2029 MB) GRAVTREE: Tree construction done. took 0.217555 sec =92083.2 NTopnodes=37417 NTopleaves=32740 tree-build-scalability=0.594131 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 132501057 particles. (took 0.408458 sec) SUBFIND: ngb iteration 2: need to repeat for 130924646 particles. (took 0.361556 sec) SUBFIND: ngb iteration 3: need to repeat for 129146742 particles. (took 0.343004 sec) SUBFIND: ngb iteration 4: need to repeat for 126967037 particles. (took 0.331061 sec) SUBFIND: ngb iteration 5: need to repeat for 123714735 particles. (took 0.311902 sec) SUBFIND: ngb iteration 6: need to repeat for 117989138 particles. (took 0.305962 sec) SUBFIND: ngb iteration 7: need to repeat for 107619416 particles. (took 0.29369 sec) SUBFIND: ngb iteration 8: need to repeat for 92303419 particles. (took 0.26328 sec) SUBFIND: ngb iteration 9: need to repeat for 77542825 particles. (took 0.212014 sec) SUBFIND: ngb iteration 10: need to repeat for 68477740 particles. (took 0.159602 sec) SUBFIND: ngb iteration 11: need to repeat for 64453565 particles. (took 0.129734 sec) SUBFIND: ngb iteration 12: need to repeat for 63022090 particles. (took 0.117534 sec) SUBFIND: ngb iteration 13: need to repeat for 62581268 particles. (took 0.114351 sec) SUBFIND: ngb iteration 14: need to repeat for 62453812 particles. (took 0.113755 sec) SUBFIND: ngb iteration 15: need to repeat for 62414495 particles. (took 0.111503 sec) SUBFIND: ngb iteration 16: need to repeat for 62401643 particles. (took 0.106293 sec) SUBFIND: ngb iteration 17: need to repeat for 62395767 particles. (took 0.0990316 sec) SUBFIND: ngb iteration 18: need to repeat for 62389646 particles. (took 0.0921383 sec) SUBFIND: ngb iteration 19: need to repeat for 62380029 particles. (took 0.0882291 sec) SUBFIND: ngb iteration 20: need to repeat for 62364937 particles. (took 0.0838801 sec) SUBFIND: ngb iteration 21: need to repeat for 62341883 particles. (took 0.0840303 sec) SUBFIND: ngb iteration 22: need to repeat for 62307423 particles. (took 0.0852588 sec) SUBFIND: ngb iteration 23: need to repeat for 62250766 particles. (took 0.0876315 sec) SUBFIND: ngb iteration 24: need to repeat for 62161642 particles. (took 0.0904428 sec) SUBFIND: ngb iteration 25: need to repeat for 62012460 particles. (took 0.0946323 sec) SUBFIND: ngb iteration 26: need to repeat for 61767290 particles. (took 0.100178 sec) SUBFIND: ngb iteration 27: need to repeat for 61360828 particles. (took 0.109429 sec) SUBFIND: ngb iteration 28: need to repeat for 60722466 particles. (took 0.122098 sec) SUBFIND: ngb iteration 29: need to repeat for 59737210 particles. (took 0.139515 sec) SUBFIND: ngb iteration 30: need to repeat for 58298133 particles. (took 0.158615 sec) SUBFIND: ngb iteration 31: need to repeat for 56282962 particles. (took 0.180263 sec) SUBFIND: ngb iteration 32: need to repeat for 53568932 particles. (took 0.202023 sec) SUBFIND: ngb iteration 33: need to repeat for 50000116 particles. (took 0.215424 sec) SUBFIND: ngb iteration 34: need to repeat for 45390137 particles. (took 0.217893 sec) SUBFIND: ngb iteration 35: need to repeat for 39627379 particles. (took 0.20334 sec) SUBFIND: ngb iteration 36: need to repeat for 32780148 particles. (took 0.181214 sec) SUBFIND: ngb iteration 37: need to repeat for 25256444 particles. (took 0.156061 sec) SUBFIND: ngb iteration 38: need to repeat for 17782432 particles. (took 0.126727 sec) SUBFIND: ngb iteration 39: need to repeat for 11187584 particles. (took 0.0970502 sec) SUBFIND: ngb iteration 40: need to repeat for 6114079 particles. (took 0.068336 sec) SUBFIND: ngb iteration 41: need to repeat for 2814259 particles. (took 0.0427569 sec) SUBFIND: ngb iteration 42: need to repeat for 1055170 particles. (took 0.023364 sec) SUBFIND: ngb iteration 43: need to repeat for 307153 particles. (took 0.0114945 sec) SUBFIND: ngb iteration 44: need to repeat for 66488 particles. (took 0.00500803 sec) SUBFIND: ngb iteration 45: need to repeat for 10176 particles. (took 0.00198566 sec) SUBFIND: ngb iteration 46: need to repeat for 981 particles. (took 0.00068341 sec) SUBFIND: ngb iteration 47: need to repeat for 46 particles. (took 0.000320662 sec) SUBFIND: ngb iteration 48: need to repeat for 2 particles. (took 0.00023598 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.85682 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828956 particles, for threshold size factor 0.6) SUBFIND: The other 2546215 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0051106 sec SUBFIND: particle balance=1.11188 SUBFIND: subfind_exchange() took 0.235954 sec SUBFIND: particle balance for processing=1.00067 SUBFIND: subdomain decomposition took 0.0513487 sec SUBFIND: serial subfind subdomain decomposition took 0.0507342 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2948 took 31.2763 sec SUBFIND: root-task=0: Serial processing of halo 0 took 31.4005 SUBFIND: Processing overall took (total time=32.5921 sec) SUBFIND: 0 out of 2340 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 120363 SUBFIND: subfind_exchange() (for return to original CPU) took 0.717792 sec TREE: Full tree construction for all particles. (presently allocated=79.9371 MB) GRAVTREE: Tree construction done. took 0.813542 sec =92083.2 NTopnodes=37417 NTopleaves=32740 tree-build-scalability=0.594131 SUBFIND: SO iteration 1: need to repeat for 2546175 halo centers. (took 0.0614414 sec) SUBFIND: SO iteration 2: need to repeat for 2546175 halo centers. (took 0.0341997 sec) SUBFIND: SO iteration 3: need to repeat for 2546175 halo centers. (took 0.0292043 sec) SUBFIND: SO iteration 4: need to repeat for 2546175 halo centers. (took 0.02122 sec) SUBFIND: SO iteration 5: need to repeat for 2546175 halo centers. (took 0.0212613 sec) SUBFIND: SO iteration 6: need to repeat for 2546175 halo centers. (took 0.021275 sec) SUBFIND: SO iteration 7: need to repeat for 2546175 halo centers. (took 0.0211521 sec) SUBFIND: SO iteration 8: need to repeat for 2546175 halo centers. (took 0.0292927 sec) SUBFIND: SO iteration 9: need to repeat for 2546175 halo centers. (took 0.0442854 sec) SUBFIND: SO iteration 10: need to repeat for 2546175 halo centers. (took 0.03851 sec) SUBFIND: SO iteration 11: need to repeat for 2546175 halo centers. (took 0.02664 sec) SUBFIND: SO iteration 12: need to repeat for 2546175 halo centers. (took 0.0210189 sec) SUBFIND: SO iteration 13: need to repeat for 2546175 halo centers. (took 0.0213039 sec) SUBFIND: SO iteration 14: need to repeat for 2546175 halo centers. (took 0.0255371 sec) SUBFIND: SO iteration 15: need to repeat for 2546175 halo centers. (took 0.0260219 sec) SUBFIND: SO iteration 16: need to repeat for 251777 halo centers. (took 0.0324882 sec) SUBFIND: SO iteration 17: need to repeat for 1773 halo centers. (took 0.0083641 sec) SUBFIND: SO iteration 1: need to repeat for 2546175 halo centers. (took 0.0412229 sec) SUBFIND: SO iteration 2: need to repeat for 2546175 halo centers. (took 0.024814 sec) SUBFIND: SO iteration 3: need to repeat for 2546175 halo centers. (took 0.0211142 sec) SUBFIND: SO iteration 4: need to repeat for 2546175 halo centers. (took 0.0541583 sec) SUBFIND: SO iteration 5: need to repeat for 2546175 halo centers. (took 0.0406427 sec) SUBFIND: SO iteration 6: need to repeat for 2546175 halo centers. (took 0.0247891 sec) SUBFIND: SO iteration 7: need to repeat for 2546175 halo centers. (took 0.0258088 sec) SUBFIND: SO iteration 8: need to repeat for 2546175 halo centers. (took 0.0210671 sec) SUBFIND: SO iteration 9: need to repeat for 2546175 halo centers. (took 0.0237311 sec) SUBFIND: SO iteration 10: need to repeat for 2546175 halo centers. (took 0.0240058 sec) SUBFIND: SO iteration 11: need to repeat for 2546175 halo centers. (took 0.0313616 sec) SUBFIND: SO iteration 12: need to repeat for 2546175 halo centers. (took 0.0232287 sec) SUBFIND: SO iteration 13: need to repeat for 2546175 halo centers. (took 0.023545 sec) SUBFIND: SO iteration 14: need to repeat for 2546175 halo centers. (took 0.0210898 sec) SUBFIND: SO iteration 15: need to repeat for 2546175 halo centers. (took 0.0210564 sec) SUBFIND: SO iteration 16: need to repeat for 147957 halo centers. (took 0.0215578 sec) SUBFIND: SO iteration 17: need to repeat for 1006 halo centers. (took 0.00614324 sec) SUBFIND: SO iteration 1: need to repeat for 2546175 halo centers. (took 0.0245963 sec) SUBFIND: SO iteration 2: need to repeat for 2546175 halo centers. (took 0.0209937 sec) SUBFIND: SO iteration 3: need to repeat for 2546175 halo centers. (took 0.0226195 sec) SUBFIND: SO iteration 4: need to repeat for 2546175 halo centers. (took 0.0321145 sec) SUBFIND: SO iteration 5: need to repeat for 2546175 halo centers. (took 0.0227677 sec) SUBFIND: SO iteration 6: need to repeat for 2546175 halo centers. (took 0.0265244 sec) SUBFIND: SO iteration 7: need to repeat for 2546175 halo centers. (took 0.0223064 sec) SUBFIND: SO iteration 8: need to repeat for 2546175 halo centers. (took 0.0226449 sec) SUBFIND: SO iteration 9: need to repeat for 2546175 halo centers. (took 0.0214311 sec) SUBFIND: SO iteration 10: need to repeat for 2546175 halo centers. (took 0.0211853 sec) SUBFIND: SO iteration 11: need to repeat for 2546175 halo centers. (took 0.0211679 sec) SUBFIND: SO iteration 12: need to repeat for 2546175 halo centers. (took 0.0213202 sec) SUBFIND: SO iteration 13: need to repeat for 2546175 halo centers. (took 0.0211655 sec) SUBFIND: SO iteration 14: need to repeat for 2546175 halo centers. (took 0.0211627 sec) SUBFIND: SO iteration 15: need to repeat for 2546175 halo centers. (took 0.0212644 sec) SUBFIND: SO iteration 16: need to repeat for 255120 halo centers. (took 0.0206028 sec) SUBFIND: SO iteration 17: need to repeat for 1782 halo centers. (took 0.00816186 sec) SUBFIND: SO iteration 1: need to repeat for 2546175 halo centers. (took 0.0212329 sec) SUBFIND: SO iteration 2: need to repeat for 2546175 halo centers. (took 0.0235223 sec) SUBFIND: SO iteration 3: need to repeat for 2546175 halo centers. (took 0.029535 sec) SUBFIND: SO iteration 4: need to repeat for 2546175 halo centers. (took 0.020651 sec) SUBFIND: SO iteration 5: need to repeat for 2546175 halo centers. (took 0.0209558 sec) SUBFIND: SO iteration 6: need to repeat for 2546175 halo centers. (took 0.0207113 sec) SUBFIND: SO iteration 7: need to repeat for 2546175 halo centers. (took 0.0215148 sec) SUBFIND: SO iteration 8: need to repeat for 2546175 halo centers. (took 0.0263855 sec) SUBFIND: SO iteration 9: need to repeat for 2546175 halo centers. (took 0.0334896 sec) SUBFIND: SO iteration 10: need to repeat for 2546175 halo centers. (took 0.0267419 sec) SUBFIND: SO iteration 11: need to repeat for 2546175 halo centers. (took 0.0206424 sec) SUBFIND: SO iteration 12: need to repeat for 2546175 halo centers. (took 0.0380102 sec) SUBFIND: SO iteration 13: need to repeat for 2546175 halo centers. (took 0.0347674 sec) SUBFIND: SO iteration 14: need to repeat for 2546175 halo centers. (took 0.0220876 sec) SUBFIND: SO iteration 15: need to repeat for 2546175 halo centers. (took 0.0234019 sec) SUBFIND: SO iteration 16: need to repeat for 2191244 halo centers. (took 0.0205929 sec) SUBFIND: SO iteration 17: need to repeat for 189375 halo centers. (took 0.0286749 sec) SUBFIND: SO iteration 18: need to repeat for 21647 halo centers. (took 0.0159225 sec) SUBFIND: determining spherical overdensity masses took 1.76072 sec SUBFIND: assembled and ordered groups and subhalos (took 0.351426 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 6.63797 sec, total size 952.351 MB, corresponds to effective I/O rate of 143.47 MB/sec SUBFIND: Subgroup catalogues saved. took = 6.63944 sec SUBFIND: Finished with SUBFIND. (total time=50.3169 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2548512 SUBFIND: Largest subhalo has 105 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133826735 FOF: preparing output order of particles took 0.948696 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 17.2961 sec, total size 5308.72 MB, corresponds to effective I/O rate of 306.931 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 548 (rank 548 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 537 (rank 537 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.