TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186464.11 Mb (on task= 621), Smallest = 186400.35 Mb (on task= 432), Average = 186423.84 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5114.98 Mb (on task= 432), Smallest = 5051.22 Mb (on task= 621), Average = 5091.49 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5114.98 Mb (on task= 432), Smallest = 5051.22 Mb (on task= 621), Average = 5091.49 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 20), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.1953 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 62476519 (tot= 62476519) masstab= 0 READIC: Type 1: 71351602 (tot= 71351602) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 834 (tot= 834) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.57627 sec, total size 6364.53 MB, corresponds to effective I/O rate of 1390.77 MB/sec READIC: Total number of particles : 133828955 INIT: Testing ID uniqueness... INIT: success. took=0.0590214 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32726, determination of top-level tree involved 6 iterations and took 0.383167 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=174 for nextra=64, reaching maximum imbalance of 1.11156|1.112 DOMAIN: combining multiple-domains took 0.0159723 sec DOMAIN: exchange of 71352436 particles DOMAIN: particle exchange done. (took 0.205268 sec) DOMAIN: domain decomposition done. (took in total 0.61015 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0319003 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.0408 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0534326 sec =75447.1 NTopnodes=37401 NTopleaves=32726 FOF: Start linking particles (presently allocated=97.6702 MB) FOF: linking of small cells took 0.000967726 sec FOF: local links done (took 0.0714713 sec, avg-work=0.0629522, imbalance=1.12037). FOF: Marked=173148 out of the 71351602 primaries which are linked FOF: begin linking across processors (presently allocated=98.6829 MB) FOF: have done 17081 cross links (processed 173148, took 0.00384509 sec) FOF: have done 3458 cross links (processed 88939, took 0.00310032 sec) FOF: have done 490 cross links (processed 12242, took 0.00261562 sec) FOF: have done 81 cross links (processed 1777, took 0.00238763 sec) FOF: have done 11 cross links (processed 269, took 0.0023408 sec) FOF: have done 0 cross links (processed 31, took 0.00232443 sec) FOF: Local groups found. FOF: primary group finding took = 0.0933867 sec FOF: Start finding nearest dm-particle (presently allocated=97.6702 MB) FOF: fof-nearest iteration 1: need to repeat for 61349175 particles. (took = 0.0457898 sec) FOF: fof-nearest iteration 2: need to repeat for 55809727 particles. (took = 0.0487847 sec) FOF: fof-nearest iteration 3: need to repeat for 39920621 particles. (took = 0.0527968 sec) FOF: fof-nearest iteration 4: need to repeat for 17804674 particles. (took = 0.0457605 sec) FOF: fof-nearest iteration 5: need to repeat for 3127238 particles. (took = 0.0256694 sec) FOF: fof-nearest iteration 6: need to repeat for 72250 particles. (took = 0.00737823 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.230183 sec FOF: compiling local group data and catalogue took = 0.0129854 sec FOF: Total number of FOF groups with at least 32 particles: 2496298 FOF: Largest FOF group has 108 particles. FOF: Total number of particles in FOF groups: 133828939 FOF: group properties are now allocated.. (presently allocated=89.4092 MB) FOF: computation of group properties took = 0.0066658 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.239755 sec FOF: Finished computing FoF groups. Complete work took 0.76219 sec (presently allocated=87.0379 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.1788 MB) GRAVTREE: Tree construction done. took 0.216772 sec =91682.8 NTopnodes=37401 NTopleaves=32726 tree-build-scalability=0.592533 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 131476913 particles. (took 0.411074 sec) SUBFIND: ngb iteration 2: need to repeat for 128801293 particles. (took 0.360479 sec) SUBFIND: ngb iteration 3: need to repeat for 126074988 particles. (took 0.338444 sec) SUBFIND: ngb iteration 4: need to repeat for 123199400 particles. (took 0.317318 sec) SUBFIND: ngb iteration 5: need to repeat for 119553880 particles. (took 0.301568 sec) SUBFIND: ngb iteration 6: need to repeat for 113729294 particles. (took 0.29392 sec) SUBFIND: ngb iteration 7: need to repeat for 103591498 particles. (took 0.278122 sec) SUBFIND: ngb iteration 8: need to repeat for 89211215 particles. (took 0.247822 sec) SUBFIND: ngb iteration 9: need to repeat for 75869663 particles. (took 0.199995 sec) SUBFIND: ngb iteration 10: need to repeat for 67827893 particles. (took 0.153776 sec) SUBFIND: ngb iteration 11: need to repeat for 64298044 particles. (took 0.128138 sec) SUBFIND: ngb iteration 12: need to repeat for 63037709 particles. (took 0.119286 sec) SUBFIND: ngb iteration 13: need to repeat for 62647112 particles. (took 0.117329 sec) SUBFIND: ngb iteration 14: need to repeat for 62529243 particles. (took 0.116263 sec) SUBFIND: ngb iteration 15: need to repeat for 62493354 particles. (took 0.113995 sec) SUBFIND: ngb iteration 16: need to repeat for 62480573 particles. (took 0.108576 sec) SUBFIND: ngb iteration 17: need to repeat for 62472375 particles. (took 0.101432 sec) SUBFIND: ngb iteration 18: need to repeat for 62461882 particles. (took 0.0938767 sec) SUBFIND: ngb iteration 19: need to repeat for 62444697 particles. (took 0.0881599 sec) SUBFIND: ngb iteration 20: need to repeat for 62419119 particles. (took 0.0852773 sec) SUBFIND: ngb iteration 21: need to repeat for 62379455 particles. (took 0.0846145 sec) SUBFIND: ngb iteration 22: need to repeat for 62317973 particles. (took 0.0860319 sec) SUBFIND: ngb iteration 23: need to repeat for 62222825 particles. (took 0.0880242 sec) SUBFIND: ngb iteration 24: need to repeat for 62071827 particles. (took 0.0909198 sec) SUBFIND: ngb iteration 25: need to repeat for 61837881 particles. (took 0.0948951 sec) SUBFIND: ngb iteration 26: need to repeat for 61455627 particles. (took 0.100989 sec) SUBFIND: ngb iteration 27: need to repeat for 60858722 particles. (took 0.11001 sec) SUBFIND: ngb iteration 28: need to repeat for 59950148 particles. (took 0.123061 sec) SUBFIND: ngb iteration 29: need to repeat for 58601476 particles. (took 0.13954 sec) SUBFIND: ngb iteration 30: need to repeat for 56718083 particles. (took 0.158252 sec) SUBFIND: ngb iteration 31: need to repeat for 54211702 particles. (took 0.178102 sec) SUBFIND: ngb iteration 32: need to repeat for 51080705 particles. (took 0.195769 sec) SUBFIND: ngb iteration 33: need to repeat for 47242922 particles. (took 0.205852 sec) SUBFIND: ngb iteration 34: need to repeat for 42569695 particles. (took 0.206979 sec) SUBFIND: ngb iteration 35: need to repeat for 36909553 particles. (took 0.193606 sec) SUBFIND: ngb iteration 36: need to repeat for 30353247 particles. (took 0.171061 sec) SUBFIND: ngb iteration 37: need to repeat for 23256364 particles. (took 0.1452 sec) SUBFIND: ngb iteration 38: need to repeat for 16292972 particles. (took 0.117172 sec) SUBFIND: ngb iteration 39: need to repeat for 10189636 particles. (took 0.088403 sec) SUBFIND: ngb iteration 40: need to repeat for 5529920 particles. (took 0.0612451 sec) SUBFIND: ngb iteration 41: need to repeat for 2527660 particles. (took 0.0386229 sec) SUBFIND: ngb iteration 42: need to repeat for 940313 particles. (took 0.0222806 sec) SUBFIND: ngb iteration 43: need to repeat for 272373 particles. (took 0.0117583 sec) SUBFIND: ngb iteration 44: need to repeat for 59026 particles. (took 0.00568477 sec) SUBFIND: ngb iteration 45: need to repeat for 9191 particles. (took 0.00219128 sec) SUBFIND: ngb iteration 46: need to repeat for 879 particles. (took 0.000627732 sec) SUBFIND: ngb iteration 47: need to repeat for 77 particles. (took 0.000342969 sec) SUBFIND: ngb iteration 48: need to repeat for 1 particles. (took 0.000275288 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.7002 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828955 particles, for threshold size factor 0.6) SUBFIND: The other 2496298 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00476246 sec SUBFIND: particle balance=1.11145 SUBFIND: subfind_exchange() took 0.233746 sec SUBFIND: particle balance for processing=1.00062 SUBFIND: subdomain decomposition took 0.0514686 sec SUBFIND: serial subfind subdomain decomposition took 0.0507918 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2890 took 29.257 sec SUBFIND: root-task=0: Serial processing of halo 0 took 29.3813 SUBFIND: Processing overall took (total time=31.9715 sec) SUBFIND: 0 out of 2388 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258158 ALLOCATE: Changing to MaxPartSph = 120518 SUBFIND: subfind_exchange() (for return to original CPU) took 0.257543 sec TREE: Full tree construction for all particles. (presently allocated=79.5991 MB) GRAVTREE: Tree construction done. took 0.793466 sec =91682.8 NTopnodes=37401 NTopleaves=32726 tree-build-scalability=0.592533 SUBFIND: SO iteration 1: need to repeat for 2496278 halo centers. (took 0.0232432 sec) SUBFIND: SO iteration 2: need to repeat for 2496278 halo centers. (took 0.0207324 sec) SUBFIND: SO iteration 3: need to repeat for 2496278 halo centers. (took 0.0209729 sec) SUBFIND: SO iteration 4: need to repeat for 2496278 halo centers. (took 0.0210137 sec) SUBFIND: SO iteration 5: need to repeat for 2496278 halo centers. (took 0.0209052 sec) SUBFIND: SO iteration 6: need to repeat for 2496278 halo centers. (took 0.0207259 sec) SUBFIND: SO iteration 7: need to repeat for 2496278 halo centers. (took 0.0208063 sec) SUBFIND: SO iteration 8: need to repeat for 2496278 halo centers. (took 0.0207975 sec) SUBFIND: SO iteration 9: need to repeat for 2496278 halo centers. (took 0.0207918 sec) SUBFIND: SO iteration 10: need to repeat for 2496278 halo centers. (took 0.0209156 sec) SUBFIND: SO iteration 11: need to repeat for 2496278 halo centers. (took 0.0213019 sec) SUBFIND: SO iteration 12: need to repeat for 2496278 halo centers. (took 0.0208004 sec) SUBFIND: SO iteration 13: need to repeat for 2496278 halo centers. (took 0.0208592 sec) SUBFIND: SO iteration 14: need to repeat for 2496278 halo centers. (took 0.0208802 sec) SUBFIND: SO iteration 15: need to repeat for 2496278 halo centers. (took 0.020824 sec) SUBFIND: SO iteration 16: need to repeat for 239769 halo centers. (took 0.0203912 sec) SUBFIND: SO iteration 17: need to repeat for 1555 halo centers. (took 0.00784368 sec) SUBFIND: SO iteration 1: need to repeat for 2496278 halo centers. (took 0.020966 sec) SUBFIND: SO iteration 2: need to repeat for 2496278 halo centers. (took 0.0206055 sec) SUBFIND: SO iteration 3: need to repeat for 2496278 halo centers. (took 0.0208379 sec) SUBFIND: SO iteration 4: need to repeat for 2496278 halo centers. (took 0.0208541 sec) SUBFIND: SO iteration 5: need to repeat for 2496278 halo centers. (took 0.0207773 sec) SUBFIND: SO iteration 6: need to repeat for 2496278 halo centers. (took 0.020928 sec) SUBFIND: SO iteration 7: need to repeat for 2496278 halo centers. (took 0.0208228 sec) SUBFIND: SO iteration 8: need to repeat for 2496278 halo centers. (took 0.0208377 sec) SUBFIND: SO iteration 9: need to repeat for 2496278 halo centers. (took 0.0208107 sec) SUBFIND: SO iteration 10: need to repeat for 2496278 halo centers. (took 0.0207857 sec) SUBFIND: SO iteration 11: need to repeat for 2496278 halo centers. (took 0.0208182 sec) SUBFIND: SO iteration 12: need to repeat for 2496278 halo centers. (took 0.0208767 sec) SUBFIND: SO iteration 13: need to repeat for 2496278 halo centers. (took 0.0210246 sec) SUBFIND: SO iteration 14: need to repeat for 2496278 halo centers. (took 0.0209147 sec) SUBFIND: SO iteration 15: need to repeat for 2496277 halo centers. (took 0.0222513 sec) SUBFIND: SO iteration 16: need to repeat for 141579 halo centers. (took 0.0208429 sec) SUBFIND: SO iteration 17: need to repeat for 916 halo centers. (took 0.00635127 sec) SUBFIND: SO iteration 1: need to repeat for 2496278 halo centers. (took 0.0209349 sec) SUBFIND: SO iteration 2: need to repeat for 2496278 halo centers. (took 0.0206871 sec) SUBFIND: SO iteration 3: need to repeat for 2496278 halo centers. (took 0.0210853 sec) SUBFIND: SO iteration 4: need to repeat for 2496278 halo centers. (took 0.0211827 sec) SUBFIND: SO iteration 5: need to repeat for 2496278 halo centers. (took 0.0214503 sec) SUBFIND: SO iteration 6: need to repeat for 2496278 halo centers. (took 0.0211977 sec) SUBFIND: SO iteration 7: need to repeat for 2496278 halo centers. (took 0.0207211 sec) SUBFIND: SO iteration 8: need to repeat for 2496278 halo centers. (took 0.0208125 sec) SUBFIND: SO iteration 9: need to repeat for 2496278 halo centers. (took 0.0211366 sec) SUBFIND: SO iteration 10: need to repeat for 2496278 halo centers. (took 0.0207315 sec) SUBFIND: SO iteration 11: need to repeat for 2496278 halo centers. (took 0.0208151 sec) SUBFIND: SO iteration 12: need to repeat for 2496278 halo centers. (took 0.0209821 sec) SUBFIND: SO iteration 13: need to repeat for 2496278 halo centers. (took 0.0208183 sec) SUBFIND: SO iteration 14: need to repeat for 2496278 halo centers. (took 0.0217628 sec) SUBFIND: SO iteration 15: need to repeat for 2496278 halo centers. (took 0.0207164 sec) SUBFIND: SO iteration 16: need to repeat for 241935 halo centers. (took 0.0202848 sec) SUBFIND: SO iteration 17: need to repeat for 1565 halo centers. (took 0.00786457 sec) SUBFIND: SO iteration 1: need to repeat for 2496278 halo centers. (took 0.0207615 sec) SUBFIND: SO iteration 2: need to repeat for 2496278 halo centers. (took 0.0212065 sec) SUBFIND: SO iteration 3: need to repeat for 2496278 halo centers. (took 0.0201321 sec) SUBFIND: SO iteration 4: need to repeat for 2496278 halo centers. (took 0.0205915 sec) SUBFIND: SO iteration 5: need to repeat for 2496278 halo centers. (took 0.0203934 sec) SUBFIND: SO iteration 6: need to repeat for 2496278 halo centers. (took 0.0204006 sec) SUBFIND: SO iteration 7: need to repeat for 2496278 halo centers. (took 0.0203544 sec) SUBFIND: SO iteration 8: need to repeat for 2496278 halo centers. (took 0.0204178 sec) SUBFIND: SO iteration 9: need to repeat for 2496278 halo centers. (took 0.0205234 sec) SUBFIND: SO iteration 10: need to repeat for 2496278 halo centers. (took 0.0208189 sec) SUBFIND: SO iteration 11: need to repeat for 2496278 halo centers. (took 0.02063 sec) SUBFIND: SO iteration 12: need to repeat for 2496278 halo centers. (took 0.0203929 sec) SUBFIND: SO iteration 13: need to repeat for 2496278 halo centers. (took 0.0204147 sec) SUBFIND: SO iteration 14: need to repeat for 2496278 halo centers. (took 0.020495 sec) SUBFIND: SO iteration 15: need to repeat for 2496278 halo centers. (took 0.0206277 sec) SUBFIND: SO iteration 16: need to repeat for 2139029 halo centers. (took 0.0208759 sec) SUBFIND: SO iteration 17: need to repeat for 195413 halo centers. (took 0.0188273 sec) SUBFIND: SO iteration 18: need to repeat for 22405 halo centers. (took 0.00719986 sec) SUBFIND: determining spherical overdensity masses took 1.38953 sec SUBFIND: assembled and ordered groups and subhalos (took 0.268023 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.60199 sec, total size 933.704 MB, corresponds to effective I/O rate of 166.674 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.60346 sec SUBFIND: Finished with SUBFIND. (total time=47.4794 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2498663 SUBFIND: Largest subhalo has 108 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133827715 FOF: preparing output order of particles took 0.952695 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.56591 sec, total size 5309.64 MB, corresponds to effective I/O rate of 619.857 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 403 (rank 403 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 409 (rank 409 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 411 (rank 411 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 414 (rank 414 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 415 (rank 415 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.