TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186475.82 Mb (on task= 621), Smallest = 186402.98 Mb (on task= 432), Average = 186427.36 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5112.36 Mb (on task= 432), Smallest = 5039.51 Mb (on task= 621), Average = 5087.97 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5112.36 Mb (on task= 432), Smallest = 5039.51 Mb (on task= 621), Average = 5087.97 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 11), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.1004 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 62555246 (tot= 62555246) masstab= 0 READIC: Type 1: 71272760 (tot= 71272760) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 929 (tot= 929) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.68199 sec, total size 6364.83 MB, corresponds to effective I/O rate of 1359.43 MB/sec READIC: Total number of particles : 133828935 INIT: Testing ID uniqueness... INIT: success. took=0.0644771 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32950, determination of top-level tree involved 6 iterations and took 0.384471 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.11637|1.11683 DOMAIN: combining multiple-domains took 0.0160031 sec DOMAIN: exchange of 71273689 particles DOMAIN: particle exchange done. (took 0.211246 sec) DOMAIN: domain decomposition done. (took in total 0.617464 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0318819 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.0744 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0531036 sec =75349.4 NTopnodes=37657 NTopleaves=32950 FOF: Start linking particles (presently allocated=97.7621 MB) FOF: linking of small cells took 0.000947384 sec FOF: local links done (took 0.0721831 sec, avg-work=0.0630586, imbalance=1.12802). FOF: Marked=180014 out of the 71272760 primaries which are linked FOF: begin linking across processors (presently allocated=98.7773 MB) FOF: have done 17808 cross links (processed 180014, took 0.00388918 sec) FOF: have done 3733 cross links (processed 91608, took 0.00318726 sec) FOF: have done 624 cross links (processed 13647, took 0.00257126 sec) FOF: have done 87 cross links (processed 2240, took 0.00242261 sec) FOF: have done 13 cross links (processed 289, took 0.00235739 sec) FOF: have done 3 cross links (processed 44, took 0.00246567 sec) FOF: have done 0 cross links (processed 7, took 0.00236918 sec) FOF: Local groups found. FOF: primary group finding took = 0.0968523 sec FOF: Start finding nearest dm-particle (presently allocated=97.7621 MB) FOF: fof-nearest iteration 1: need to repeat for 61413995 particles. (took = 0.0460559 sec) FOF: fof-nearest iteration 2: need to repeat for 55813237 particles. (took = 0.0494061 sec) FOF: fof-nearest iteration 3: need to repeat for 39789823 particles. (took = 0.052971 sec) FOF: fof-nearest iteration 4: need to repeat for 17617164 particles. (took = 0.045792 sec) FOF: fof-nearest iteration 5: need to repeat for 3068857 particles. (took = 0.0255774 sec) FOF: fof-nearest iteration 6: need to repeat for 71022 particles. (took = 0.00728383 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.231063 sec FOF: compiling local group data and catalogue took = 0.0130355 sec FOF: Total number of FOF groups with at least 32 particles: 2447321 FOF: Largest FOF group has 110 particles. FOF: Total number of particles in FOF groups: 133828923 FOF: group properties are now allocated.. (presently allocated=89.4545 MB) FOF: computation of group properties took = 0.00680197 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.243602 sec FOF: Finished computing FoF groups. Complete work took 0.774117 sec (presently allocated=87.0697 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.2333 MB) GRAVTREE: Tree construction done. took 0.220614 sec =91561.5 NTopnodes=37657 NTopleaves=32950 tree-build-scalability=0.5892 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 129918029 particles. (took 0.417785 sec) SUBFIND: ngb iteration 2: need to repeat for 125653441 particles. (took 0.349668 sec) SUBFIND: ngb iteration 3: need to repeat for 121558827 particles. (took 0.32258 sec) SUBFIND: ngb iteration 4: need to repeat for 117715368 particles. (took 0.297748 sec) SUBFIND: ngb iteration 5: need to repeat for 113582720 particles. (took 0.2834 sec) SUBFIND: ngb iteration 6: need to repeat for 107761170 particles. (took 0.274497 sec) SUBFIND: ngb iteration 7: need to repeat for 98277378 particles. (took 0.262001 sec) SUBFIND: ngb iteration 8: need to repeat for 85401801 particles. (took 0.233345 sec) SUBFIND: ngb iteration 9: need to repeat for 73913827 particles. (took 0.190476 sec) SUBFIND: ngb iteration 10: need to repeat for 67107322 particles. (took 0.150649 sec) SUBFIND: ngb iteration 11: need to repeat for 64115703 particles. (took 0.126483 sec) SUBFIND: ngb iteration 12: need to repeat for 63047016 particles. (took 0.118888 sec) SUBFIND: ngb iteration 13: need to repeat for 62708627 particles. (took 0.118526 sec) SUBFIND: ngb iteration 14: need to repeat for 62605520 particles. (took 0.118111 sec) SUBFIND: ngb iteration 15: need to repeat for 62572528 particles. (took 0.115688 sec) SUBFIND: ngb iteration 16: need to repeat for 62559445 particles. (took 0.110277 sec) SUBFIND: ngb iteration 17: need to repeat for 62547679 particles. (took 0.102935 sec) SUBFIND: ngb iteration 18: need to repeat for 62527910 particles. (took 0.0955135 sec) SUBFIND: ngb iteration 19: need to repeat for 62496037 particles. (took 0.0891078 sec) SUBFIND: ngb iteration 20: need to repeat for 62449442 particles. (took 0.0858751 sec) SUBFIND: ngb iteration 21: need to repeat for 62379034 particles. (took 0.0857101 sec) SUBFIND: ngb iteration 22: need to repeat for 62277358 particles. (took 0.0870565 sec) SUBFIND: ngb iteration 23: need to repeat for 62125004 particles. (took 0.0887146 sec) SUBFIND: ngb iteration 24: need to repeat for 61883183 particles. (took 0.0911444 sec) SUBFIND: ngb iteration 25: need to repeat for 61518451 particles. (took 0.0946051 sec) SUBFIND: ngb iteration 26: need to repeat for 60945529 particles. (took 0.101584 sec) SUBFIND: ngb iteration 27: need to repeat for 60064992 particles. (took 0.109822 sec) SUBFIND: ngb iteration 28: need to repeat for 58751904 particles. (took 0.122759 sec) SUBFIND: ngb iteration 29: need to repeat for 56852606 particles. (took 0.135917 sec) SUBFIND: ngb iteration 30: need to repeat for 54306804 particles. (took 0.154149 sec) SUBFIND: ngb iteration 31: need to repeat for 51116248 particles. (took 0.170531 sec) SUBFIND: ngb iteration 32: need to repeat for 47394118 particles. (took 0.185159 sec) SUBFIND: ngb iteration 33: need to repeat for 43192355 particles. (took 0.195426 sec) SUBFIND: ngb iteration 34: need to repeat for 38435401 particles. (took 0.195453 sec) SUBFIND: ngb iteration 35: need to repeat for 32983136 particles. (took 0.182096 sec) SUBFIND: ngb iteration 36: need to repeat for 26859908 particles. (took 0.158961 sec) SUBFIND: ngb iteration 37: need to repeat for 20403916 particles. (took 0.131753 sec) SUBFIND: ngb iteration 38: need to repeat for 14182762 particles. (took 0.105846 sec) SUBFIND: ngb iteration 39: need to repeat for 8812150 particles. (took 0.0801658 sec) SUBFIND: ngb iteration 40: need to repeat for 4760283 particles. (took 0.0566237 sec) SUBFIND: ngb iteration 41: need to repeat for 2168002 particles. (took 0.0359926 sec) SUBFIND: ngb iteration 42: need to repeat for 803341 particles. (took 0.0205263 sec) SUBFIND: ngb iteration 43: need to repeat for 232690 particles. (took 0.0100073 sec) SUBFIND: ngb iteration 44: need to repeat for 51575 particles. (took 0.00440006 sec) SUBFIND: ngb iteration 45: need to repeat for 8548 particles. (took 0.00166211 sec) SUBFIND: ngb iteration 46: need to repeat for 1125 particles. (took 0.000678837 sec) SUBFIND: ngb iteration 47: need to repeat for 54 particles. (took 0.000509683 sec) SUBFIND: ngb iteration 48: need to repeat for 4 particles. (took 0.000383792 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.47524 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828935 particles, for threshold size factor 0.6) SUBFIND: The other 2447321 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0050479 sec SUBFIND: particle balance=1.11636 SUBFIND: subfind_exchange() took 0.235537 sec SUBFIND: particle balance for processing=1.00051 SUBFIND: subdomain decomposition took 0.0514209 sec SUBFIND: serial subfind subdomain decomposition took 0.0507632 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2833 took 28.7879 sec SUBFIND: root-task=0: Serial processing of halo 0 took 28.9117 SUBFIND: Processing overall took (total time=31.6046 sec) SUBFIND: 0 out of 2600 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 120670 SUBFIND: subfind_exchange() (for return to original CPU) took 0.259334 sec TREE: Full tree construction for all particles. (presently allocated=79.7032 MB) GRAVTREE: Tree construction done. took 0.804347 sec =91561.5 NTopnodes=37657 NTopleaves=32950 tree-build-scalability=0.5892 SUBFIND: SO iteration 1: need to repeat for 2447297 halo centers. (took 0.0234549 sec) SUBFIND: SO iteration 2: need to repeat for 2447297 halo centers. (took 0.021264 sec) SUBFIND: SO iteration 3: need to repeat for 2447297 halo centers. (took 0.0207614 sec) SUBFIND: SO iteration 4: need to repeat for 2447297 halo centers. (took 0.0206451 sec) SUBFIND: SO iteration 5: need to repeat for 2447297 halo centers. (took 0.0205765 sec) SUBFIND: SO iteration 6: need to repeat for 2447297 halo centers. (took 0.0206688 sec) SUBFIND: SO iteration 7: need to repeat for 2447297 halo centers. (took 0.0206078 sec) SUBFIND: SO iteration 8: need to repeat for 2447297 halo centers. (took 0.021833 sec) SUBFIND: SO iteration 9: need to repeat for 2447297 halo centers. (took 0.0205772 sec) SUBFIND: SO iteration 10: need to repeat for 2447297 halo centers. (took 0.0208603 sec) SUBFIND: SO iteration 11: need to repeat for 2447297 halo centers. (took 0.0211103 sec) SUBFIND: SO iteration 12: need to repeat for 2447297 halo centers. (took 0.0215122 sec) SUBFIND: SO iteration 13: need to repeat for 2447297 halo centers. (took 0.0224107 sec) SUBFIND: SO iteration 14: need to repeat for 2447297 halo centers. (took 0.0222059 sec) SUBFIND: SO iteration 15: need to repeat for 2447297 halo centers. (took 0.0226653 sec) SUBFIND: SO iteration 16: need to repeat for 227779 halo centers. (took 0.0216395 sec) SUBFIND: SO iteration 17: need to repeat for 1440 halo centers. (took 0.00829353 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000732491 sec) SUBFIND: SO iteration 1: need to repeat for 2447297 halo centers. (took 0.02212 sec) SUBFIND: SO iteration 2: need to repeat for 2447297 halo centers. (took 0.0207843 sec) SUBFIND: SO iteration 3: need to repeat for 2447297 halo centers. (took 0.0214274 sec) SUBFIND: SO iteration 4: need to repeat for 2447297 halo centers. (took 0.0212725 sec) SUBFIND: SO iteration 5: need to repeat for 2447297 halo centers. (took 0.0209706 sec) SUBFIND: SO iteration 6: need to repeat for 2447297 halo centers. (took 0.020896 sec) SUBFIND: SO iteration 7: need to repeat for 2447297 halo centers. (took 0.0209525 sec) SUBFIND: SO iteration 8: need to repeat for 2447297 halo centers. (took 0.0205737 sec) SUBFIND: SO iteration 9: need to repeat for 2447297 halo centers. (took 0.0205729 sec) SUBFIND: SO iteration 10: need to repeat for 2447297 halo centers. (took 0.0216464 sec) SUBFIND: SO iteration 11: need to repeat for 2447297 halo centers. (took 0.0207673 sec) SUBFIND: SO iteration 12: need to repeat for 2447297 halo centers. (took 0.0205369 sec) SUBFIND: SO iteration 13: need to repeat for 2447297 halo centers. (took 0.0206555 sec) SUBFIND: SO iteration 14: need to repeat for 2447297 halo centers. (took 0.0206505 sec) SUBFIND: SO iteration 15: need to repeat for 2447297 halo centers. (took 0.0205907 sec) SUBFIND: SO iteration 16: need to repeat for 135233 halo centers. (took 0.0201402 sec) SUBFIND: SO iteration 17: need to repeat for 897 halo centers. (took 0.00581826 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000289788 sec) SUBFIND: SO iteration 1: need to repeat for 2447297 halo centers. (took 0.0210041 sec) SUBFIND: SO iteration 2: need to repeat for 2447297 halo centers. (took 0.0203849 sec) SUBFIND: SO iteration 3: need to repeat for 2447297 halo centers. (took 0.0206754 sec) SUBFIND: SO iteration 4: need to repeat for 2447297 halo centers. (took 0.020535 sec) SUBFIND: SO iteration 5: need to repeat for 2447297 halo centers. (took 0.0207908 sec) SUBFIND: SO iteration 6: need to repeat for 2447297 halo centers. (took 0.0205478 sec) SUBFIND: SO iteration 7: need to repeat for 2447297 halo centers. (took 0.0207771 sec) SUBFIND: SO iteration 8: need to repeat for 2447297 halo centers. (took 0.0204811 sec) SUBFIND: SO iteration 9: need to repeat for 2447297 halo centers. (took 0.0205006 sec) SUBFIND: SO iteration 10: need to repeat for 2447297 halo centers. (took 0.0220396 sec) SUBFIND: SO iteration 11: need to repeat for 2447297 halo centers. (took 0.0205588 sec) SUBFIND: SO iteration 12: need to repeat for 2447297 halo centers. (took 0.0206127 sec) SUBFIND: SO iteration 13: need to repeat for 2447297 halo centers. (took 0.0205435 sec) SUBFIND: SO iteration 14: need to repeat for 2447297 halo centers. (took 0.0205265 sec) SUBFIND: SO iteration 15: need to repeat for 2447297 halo centers. (took 0.020511 sec) SUBFIND: SO iteration 16: need to repeat for 230778 halo centers. (took 0.0211525 sec) SUBFIND: SO iteration 17: need to repeat for 1450 halo centers. (took 0.00769022 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000316819 sec) SUBFIND: SO iteration 1: need to repeat for 2447297 halo centers. (took 0.0215628 sec) SUBFIND: SO iteration 2: need to repeat for 2447297 halo centers. (took 0.020547 sec) SUBFIND: SO iteration 3: need to repeat for 2447297 halo centers. (took 0.0205007 sec) SUBFIND: SO iteration 4: need to repeat for 2447297 halo centers. (took 0.0201724 sec) SUBFIND: SO iteration 5: need to repeat for 2447297 halo centers. (took 0.0201695 sec) SUBFIND: SO iteration 6: need to repeat for 2447297 halo centers. (took 0.0202195 sec) SUBFIND: SO iteration 7: need to repeat for 2447297 halo centers. (took 0.0202297 sec) SUBFIND: SO iteration 8: need to repeat for 2447297 halo centers. (took 0.0202804 sec) SUBFIND: SO iteration 9: need to repeat for 2447297 halo centers. (took 0.0205798 sec) SUBFIND: SO iteration 10: need to repeat for 2447297 halo centers. (took 0.0203638 sec) SUBFIND: SO iteration 11: need to repeat for 2447297 halo centers. (took 0.0205888 sec) SUBFIND: SO iteration 12: need to repeat for 2447297 halo centers. (took 0.0204491 sec) SUBFIND: SO iteration 13: need to repeat for 2447297 halo centers. (took 0.0202594 sec) SUBFIND: SO iteration 14: need to repeat for 2447297 halo centers. (took 0.0205514 sec) SUBFIND: SO iteration 15: need to repeat for 2447297 halo centers. (took 0.0203798 sec) SUBFIND: SO iteration 16: need to repeat for 2087961 halo centers. (took 0.0209803 sec) SUBFIND: SO iteration 17: need to repeat for 200789 halo centers. (took 0.0184036 sec) SUBFIND: SO iteration 18: need to repeat for 21829 halo centers. (took 0.00716954 sec) SUBFIND: determining spherical overdensity masses took 1.39131 sec SUBFIND: assembled and ordered groups and subhalos (took 0.26403 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.62079 sec, total size 915.437 MB, corresponds to effective I/O rate of 162.866 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.62224 sec SUBFIND: Finished with SUBFIND. (total time=46.9235 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2449891 SUBFIND: Largest subhalo has 110 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133827487 FOF: preparing output order of particles took 0.966844 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 7.82339 sec, total size 5310.54 MB, corresponds to effective I/O rate of 678.803 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 369 (rank 369 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 381 (rank 381 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.