TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186474.07 Mb (on task= 621), Smallest = 186399.76 Mb (on task= 270), Average = 186427.74 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5115.57 Mb (on task= 270), Smallest = 5041.26 Mb (on task= 621), Average = 5087.59 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5115.57 Mb (on task= 270), Smallest = 5041.26 Mb (on task= 621), Average = 5087.59 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 16), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c105-181.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 13.8627 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 62956417 (tot= 62956417) masstab= 0 READIC: Type 1: 70871022 (tot= 70871022) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 1527 (tot= 1527) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.05062 sec, total size 6366.36 MB, corresponds to effective I/O rate of 1260.51 MB/sec READIC: Total number of particles : 133828966 INIT: Testing ID uniqueness... INIT: success. took=0.0616229 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32684, determination of top-level tree involved 6 iterations and took 0.384953 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.1167|1.11683 DOMAIN: combining multiple-domains took 0.0157524 sec DOMAIN: exchange of 70872549 particles DOMAIN: particle exchange done. (took 0.218149 sec) DOMAIN: domain decomposition done. (took in total 0.624658 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0329359 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.2209 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0532672 sec =73347.8 NTopnodes=37353 NTopleaves=32684 FOF: Start linking particles (presently allocated=98.0125 MB) FOF: linking of small cells took 0.000763427 sec FOF: local links done (took 0.0736244 sec, avg-work=0.0635915, imbalance=1.13532). FOF: Marked=180008 out of the 70871022 primaries which are linked FOF: begin linking across processors (presently allocated=99.04 MB) FOF: have done 16835 cross links (processed 180008, took 0.00387057 sec) FOF: have done 3625 cross links (processed 92961, took 0.00311824 sec) FOF: have done 618 cross links (processed 13415, took 0.00259006 sec) FOF: have done 85 cross links (processed 2251, took 0.00239467 sec) FOF: have done 17 cross links (processed 251, took 0.00232911 sec) FOF: have done 2 cross links (processed 46, took 0.00229831 sec) FOF: have done 0 cross links (processed 4, took 0.00232121 sec) FOF: Local groups found. FOF: primary group finding took = 0.0977651 sec FOF: Start finding nearest dm-particle (presently allocated=98.0125 MB) FOF: fof-nearest iteration 1: need to repeat for 61736476 particles. (took = 0.0465227 sec) FOF: fof-nearest iteration 2: need to repeat for 55771036 particles. (took = 0.0502818 sec) FOF: fof-nearest iteration 3: need to repeat for 39024215 particles. (took = 0.0541868 sec) FOF: fof-nearest iteration 4: need to repeat for 16667129 particles. (took = 0.0461702 sec) FOF: fof-nearest iteration 5: need to repeat for 2799408 particles. (took = 0.0251134 sec) FOF: fof-nearest iteration 6: need to repeat for 63838 particles. (took = 0.00699787 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.233426 sec FOF: compiling local group data and catalogue took = 0.0130824 sec FOF: Total number of FOF groups with at least 32 particles: 2212180 FOF: Largest FOF group has 122 particles. FOF: Total number of particles in FOF groups: 133828909 FOF: group properties are now allocated.. (presently allocated=89.5688 MB) FOF: computation of group properties took = 0.00664011 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.23778 sec FOF: Finished computing FoF groups. Complete work took 0.765086 sec (presently allocated=87.1348 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.2979 MB) GRAVTREE: Tree construction done. took 0.150777 sec =89442.4 NTopnodes=37353 NTopleaves=32684 tree-build-scalability=0.582863 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 123562535 particles. (took 0.426149 sec) SUBFIND: ngb iteration 2: need to repeat for 112906651 particles. (took 0.327978 sec) SUBFIND: ngb iteration 3: need to repeat for 103413573 particles. (took 0.26357 sec) SUBFIND: ngb iteration 4: need to repeat for 95957941 particles. (took 0.216775 sec) SUBFIND: ngb iteration 5: need to repeat for 90332664 particles. (took 0.192206 sec) SUBFIND: ngb iteration 6: need to repeat for 85577581 particles. (took 0.175708 sec) SUBFIND: ngb iteration 7: need to repeat for 80400244 particles. (took 0.164206 sec) SUBFIND: ngb iteration 8: need to repeat for 74591964 particles. (took 0.154111 sec) SUBFIND: ngb iteration 9: need to repeat for 69572671 particles. (took 0.141089 sec) SUBFIND: ngb iteration 10: need to repeat for 66272435 particles. (took 0.129795 sec) SUBFIND: ngb iteration 11: need to repeat for 64509114 particles. (took 0.124765 sec) SUBFIND: ngb iteration 12: need to repeat for 63676711 particles. (took 0.125085 sec) SUBFIND: ngb iteration 13: need to repeat for 63295386 particles. (took 0.127438 sec) SUBFIND: ngb iteration 14: need to repeat for 63117206 particles. (took 0.127769 sec) SUBFIND: ngb iteration 15: need to repeat for 63027512 particles. (took 0.124656 sec) SUBFIND: ngb iteration 16: need to repeat for 62967919 particles. (took 0.118698 sec) SUBFIND: ngb iteration 17: need to repeat for 62894455 particles. (took 0.110612 sec) SUBFIND: ngb iteration 18: need to repeat for 62789294 particles. (took 0.102584 sec) SUBFIND: ngb iteration 19: need to repeat for 62646409 particles. (took 0.0953769 sec) SUBFIND: ngb iteration 20: need to repeat for 62462753 particles. (took 0.0917436 sec) SUBFIND: ngb iteration 21: need to repeat for 62212657 particles. (took 0.0907676 sec) SUBFIND: ngb iteration 22: need to repeat for 61849956 particles. (took 0.0914112 sec) SUBFIND: ngb iteration 23: need to repeat for 61321203 particles. (took 0.0920909 sec) SUBFIND: ngb iteration 24: need to repeat for 60556629 particles. (took 0.0936138 sec) SUBFIND: ngb iteration 25: need to repeat for 59381056 particles. (took 0.0962632 sec) SUBFIND: ngb iteration 26: need to repeat for 57656666 particles. (took 0.0991844 sec) SUBFIND: ngb iteration 27: need to repeat for 55126634 particles. (took 0.103006 sec) SUBFIND: ngb iteration 28: need to repeat for 51578230 particles. (took 0.107324 sec) SUBFIND: ngb iteration 29: need to repeat for 46911433 particles. (took 0.114245 sec) SUBFIND: ngb iteration 30: need to repeat for 41174264 particles. (took 0.117508 sec) SUBFIND: ngb iteration 31: need to repeat for 34794627 particles. (took 0.118684 sec) SUBFIND: ngb iteration 32: need to repeat for 28444883 particles. (took 0.118028 sec) SUBFIND: ngb iteration 33: need to repeat for 22772946 particles. (took 0.113742 sec) SUBFIND: ngb iteration 34: need to repeat for 18006057 particles. (took 0.103562 sec) SUBFIND: ngb iteration 35: need to repeat for 13946777 particles. (took 0.0892802 sec) SUBFIND: ngb iteration 36: need to repeat for 10391149 particles. (took 0.0721563 sec) SUBFIND: ngb iteration 37: need to repeat for 7313450 particles. (took 0.0570419 sec) SUBFIND: ngb iteration 38: need to repeat for 4772638 particles. (took 0.0436268 sec) SUBFIND: ngb iteration 39: need to repeat for 2824429 particles. (took 0.0315414 sec) SUBFIND: ngb iteration 40: need to repeat for 1481655 particles. (took 0.0212163 sec) SUBFIND: ngb iteration 41: need to repeat for 674146 particles. (took 0.0134529 sec) SUBFIND: ngb iteration 42: need to repeat for 257203 particles. (took 0.00794185 sec) SUBFIND: ngb iteration 43: need to repeat for 79596 particles. (took 0.00449556 sec) SUBFIND: ngb iteration 44: need to repeat for 19916 particles. (took 0.00210218 sec) SUBFIND: ngb iteration 45: need to repeat for 4020 particles. (took 0.00116806 sec) SUBFIND: ngb iteration 46: need to repeat for 607 particles. (took 0.000497952 sec) SUBFIND: ngb iteration 47: need to repeat for 58 particles. (took 0.000378033 sec) SUBFIND: ngb iteration 48: need to repeat for 5 particles. (took 0.000242803 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 5.14913 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828966 particles, for threshold size factor 0.6) SUBFIND: The other 2212180 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00506452 sec SUBFIND: particle balance=1.11626 SUBFIND: subfind_exchange() took 0.236254 sec SUBFIND: particle balance for processing=1.00063 SUBFIND: subdomain decomposition took 0.0512547 sec SUBFIND: serial subfind subdomain decomposition took 0.0508264 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2561 took 25.8324 sec SUBFIND: root-task=0: Serial processing of halo 0 took 25.9566 SUBFIND: Processing overall took (total time=28.123 sec) SUBFIND: 0 out of 2431 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 121445 SUBFIND: subfind_exchange() (for return to original CPU) took 0.26017 sec TREE: Full tree construction for all particles. (presently allocated=80.1117 MB) GRAVTREE: Tree construction done. took 0.813515 sec =89442.4 NTopnodes=37353 NTopleaves=32684 tree-build-scalability=0.582863 SUBFIND: SO iteration 1: need to repeat for 2212165 halo centers. (took 0.0220857 sec) SUBFIND: SO iteration 2: need to repeat for 2212165 halo centers. (took 0.0200441 sec) SUBFIND: SO iteration 3: need to repeat for 2212165 halo centers. (took 0.0200612 sec) SUBFIND: SO iteration 4: need to repeat for 2212165 halo centers. (took 0.0199952 sec) SUBFIND: SO iteration 5: need to repeat for 2212165 halo centers. (took 0.0199523 sec) SUBFIND: SO iteration 6: need to repeat for 2212165 halo centers. (took 0.0200964 sec) SUBFIND: SO iteration 7: need to repeat for 2212165 halo centers. (took 0.0201788 sec) SUBFIND: SO iteration 8: need to repeat for 2212165 halo centers. (took 0.0204791 sec) SUBFIND: SO iteration 9: need to repeat for 2212165 halo centers. (took 0.0211911 sec) SUBFIND: SO iteration 10: need to repeat for 2212165 halo centers. (took 0.0215461 sec) SUBFIND: SO iteration 11: need to repeat for 2212165 halo centers. (took 0.022123 sec) SUBFIND: SO iteration 12: need to repeat for 2212165 halo centers. (took 0.0218509 sec) SUBFIND: SO iteration 13: need to repeat for 2212165 halo centers. (took 0.0213074 sec) SUBFIND: SO iteration 14: need to repeat for 2212165 halo centers. (took 0.0207992 sec) SUBFIND: SO iteration 15: need to repeat for 2212165 halo centers. (took 0.0210511 sec) SUBFIND: SO iteration 16: need to repeat for 181069 halo centers. (took 0.0197019 sec) SUBFIND: SO iteration 17: need to repeat for 812 halo centers. (took 0.00707864 sec) SUBFIND: SO iteration 1: need to repeat for 2212165 halo centers. (took 0.0203568 sec) SUBFIND: SO iteration 2: need to repeat for 2212165 halo centers. (took 0.0200694 sec) SUBFIND: SO iteration 3: need to repeat for 2212165 halo centers. (took 0.0200377 sec) SUBFIND: SO iteration 4: need to repeat for 2212165 halo centers. (took 0.0200511 sec) SUBFIND: SO iteration 5: need to repeat for 2212165 halo centers. (took 0.0202196 sec) SUBFIND: SO iteration 6: need to repeat for 2212165 halo centers. (took 0.0199328 sec) SUBFIND: SO iteration 7: need to repeat for 2212165 halo centers. (took 0.019967 sec) SUBFIND: SO iteration 8: need to repeat for 2212165 halo centers. (took 0.0199129 sec) SUBFIND: SO iteration 9: need to repeat for 2212165 halo centers. (took 0.0202961 sec) SUBFIND: SO iteration 10: need to repeat for 2212165 halo centers. (took 0.0200368 sec) SUBFIND: SO iteration 11: need to repeat for 2212165 halo centers. (took 0.0212871 sec) SUBFIND: SO iteration 12: need to repeat for 2212165 halo centers. (took 0.0216964 sec) SUBFIND: SO iteration 13: need to repeat for 2212165 halo centers. (took 0.0225664 sec) SUBFIND: SO iteration 14: need to repeat for 2212165 halo centers. (took 0.0228164 sec) SUBFIND: SO iteration 15: need to repeat for 2212164 halo centers. (took 0.0216873 sec) SUBFIND: SO iteration 16: need to repeat for 105400 halo centers. (took 0.0205612 sec) SUBFIND: SO iteration 17: need to repeat for 491 halo centers. (took 0.0055058 sec) SUBFIND: SO iteration 1: need to repeat for 2212165 halo centers. (took 0.0213231 sec) SUBFIND: SO iteration 2: need to repeat for 2212165 halo centers. (took 0.0203302 sec) SUBFIND: SO iteration 3: need to repeat for 2212165 halo centers. (took 0.0208513 sec) SUBFIND: SO iteration 4: need to repeat for 2212165 halo centers. (took 0.0206952 sec) SUBFIND: SO iteration 5: need to repeat for 2212165 halo centers. (took 0.021873 sec) SUBFIND: SO iteration 6: need to repeat for 2212165 halo centers. (took 0.020354 sec) SUBFIND: SO iteration 7: need to repeat for 2212165 halo centers. (took 0.0199113 sec) SUBFIND: SO iteration 8: need to repeat for 2212165 halo centers. (took 0.0199202 sec) SUBFIND: SO iteration 9: need to repeat for 2212165 halo centers. (took 0.0199438 sec) SUBFIND: SO iteration 10: need to repeat for 2212165 halo centers. (took 0.0199201 sec) SUBFIND: SO iteration 11: need to repeat for 2212165 halo centers. (took 0.0198572 sec) SUBFIND: SO iteration 12: need to repeat for 2212165 halo centers. (took 0.0200174 sec) SUBFIND: SO iteration 13: need to repeat for 2212165 halo centers. (took 0.0199317 sec) SUBFIND: SO iteration 14: need to repeat for 2212165 halo centers. (took 0.020047 sec) SUBFIND: SO iteration 15: need to repeat for 2212165 halo centers. (took 0.0198939 sec) SUBFIND: SO iteration 16: need to repeat for 183690 halo centers. (took 0.0195002 sec) SUBFIND: SO iteration 17: need to repeat for 840 halo centers. (took 0.00698935 sec) SUBFIND: SO iteration 1: need to repeat for 2212165 halo centers. (took 0.0204383 sec) SUBFIND: SO iteration 2: need to repeat for 2212165 halo centers. (took 0.0200382 sec) SUBFIND: SO iteration 3: need to repeat for 2212165 halo centers. (took 0.0195002 sec) SUBFIND: SO iteration 4: need to repeat for 2212165 halo centers. (took 0.0196906 sec) SUBFIND: SO iteration 5: need to repeat for 2212165 halo centers. (took 0.0195876 sec) SUBFIND: SO iteration 6: need to repeat for 2212165 halo centers. (took 0.0195927 sec) SUBFIND: SO iteration 7: need to repeat for 2212165 halo centers. (took 0.0196176 sec) SUBFIND: SO iteration 8: need to repeat for 2212165 halo centers. (took 0.0195979 sec) SUBFIND: SO iteration 9: need to repeat for 2212165 halo centers. (took 0.0196248 sec) SUBFIND: SO iteration 10: need to repeat for 2212165 halo centers. (took 0.0196056 sec) SUBFIND: SO iteration 11: need to repeat for 2212165 halo centers. (took 0.0196514 sec) SUBFIND: SO iteration 12: need to repeat for 2212165 halo centers. (took 0.0199078 sec) SUBFIND: SO iteration 13: need to repeat for 2212165 halo centers. (took 0.019652 sec) SUBFIND: SO iteration 14: need to repeat for 2212165 halo centers. (took 0.019908 sec) SUBFIND: SO iteration 15: need to repeat for 2212165 halo centers. (took 0.0196172 sec) SUBFIND: SO iteration 16: need to repeat for 1838972 halo centers. (took 0.0195845 sec) SUBFIND: SO iteration 17: need to repeat for 181128 halo centers. (took 0.0175942 sec) SUBFIND: SO iteration 18: need to repeat for 14720 halo centers. (took 0.0067999 sec) SUBFIND: determining spherical overdensity masses took 1.35334 sec SUBFIND: assembled and ordered groups and subhalos (took 0.262064 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.57647 sec, total size 827.495 MB, corresponds to effective I/O rate of 148.39 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.5778 sec SUBFIND: Finished with SUBFIND. (total time=41.973 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2214575 SUBFIND: Largest subhalo has 122 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133827913 FOF: preparing output order of particles took 0.962105 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.5563 sec, total size 5315.13 MB, corresponds to effective I/O rate of 621.195 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 731 (rank 731 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 750 (rank 750 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 413 (rank 413 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 778 (rank 778 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.