TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186472.40 Mb (on task= 621), Smallest = 186399.38 Mb (on task= 270), Average = 186426.50 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5115.95 Mb (on task= 270), Smallest = 5042.93 Mb (on task= 621), Average = 5088.83 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5115.95 Mb (on task= 270), Smallest = 5042.93 Mb (on task= 621), Average = 5088.83 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 16), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c105-181.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.7908 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 63039190 (tot= 63039190) masstab= 0 READIC: Type 1: 70788019 (tot= 70788019) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 1720 (tot= 1720) masstab= 0 READIC: Type 5: 2 (tot= 2) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.66045 sec, total size 6366.68 MB, corresponds to effective I/O rate of 1366.11 MB/sec READIC: Total number of particles : 133828931 INIT: Testing ID uniqueness... INIT: success. took=0.0588834 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32278, determination of top-level tree involved 6 iterations and took 0.381261 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.11673|1.11683 DOMAIN: combining multiple-domains took 0.0156653 sec DOMAIN: exchange of 70789741 particles DOMAIN: particle exchange done. (took 0.216875 sec) DOMAIN: domain decomposition done. (took in total 0.619574 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0328584 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.2459 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0511322 sec =72561 NTopnodes=36889 NTopleaves=32278 FOF: Start linking particles (presently allocated=98.0153 MB) FOF: linking of small cells took 0.000771094 sec FOF: local links done (took 0.073501 sec, avg-work=0.0637126, imbalance=1.13026). FOF: Marked=182142 out of the 70788019 primaries which are linked FOF: begin linking across processors (presently allocated=99.0353 MB) FOF: have done 17016 cross links (processed 182142, took 0.0038898 sec) FOF: have done 3636 cross links (processed 92848, took 0.00319476 sec) FOF: have done 602 cross links (processed 13349, took 0.00260049 sec) FOF: have done 96 cross links (processed 2145, took 0.00237172 sec) FOF: have done 9 cross links (processed 297, took 0.00235263 sec) FOF: have done 0 cross links (processed 30, took 0.00225692 sec) FOF: Local groups found. FOF: primary group finding took = 0.0955288 sec FOF: Start finding nearest dm-particle (presently allocated=98.0153 MB) FOF: fof-nearest iteration 1: need to repeat for 61803204 particles. (took = 0.046515 sec) FOF: fof-nearest iteration 2: need to repeat for 55759504 particles. (took = 0.0504661 sec) FOF: fof-nearest iteration 3: need to repeat for 38861823 particles. (took = 0.0543511 sec) FOF: fof-nearest iteration 4: need to repeat for 16483641 particles. (took = 0.0462516 sec) FOF: fof-nearest iteration 5: need to repeat for 2750582 particles. (took = 0.0248851 sec) FOF: fof-nearest iteration 6: need to repeat for 63464 particles. (took = 0.00686218 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.233505 sec FOF: compiling local group data and catalogue took = 0.0129952 sec FOF: Total number of FOF groups with at least 32 particles: 2169369 FOF: Largest FOF group has 124 particles. FOF: Total number of particles in FOF groups: 133828873 FOF: group properties are now allocated.. (presently allocated=89.5607 MB) FOF: computation of group properties took = 0.0064038 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.262859 sec FOF: Finished computing FoF groups. Complete work took 0.802916 sec (presently allocated=87.1395 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.3047 MB) GRAVTREE: Tree construction done. took 0.151347 sec =88641.8 NTopnodes=36889 NTopleaves=32278 tree-build-scalability=0.584323 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 124564626 particles. (took 0.430938 sec) SUBFIND: ngb iteration 2: need to repeat for 114974520 particles. (took 0.33275 sec) SUBFIND: ngb iteration 3: need to repeat for 106313437 particles. (took 0.271197 sec) SUBFIND: ngb iteration 4: need to repeat for 99446796 particles. (took 0.225594 sec) SUBFIND: ngb iteration 5: need to repeat for 94135548 particles. (took 0.19863 sec) SUBFIND: ngb iteration 6: need to repeat for 89362896 particles. (took 0.184175 sec) SUBFIND: ngb iteration 7: need to repeat for 83826267 particles. (took 0.171521 sec) SUBFIND: ngb iteration 8: need to repeat for 77333939 particles. (took 0.161575 sec) SUBFIND: ngb iteration 9: need to repeat for 71480762 particles. (took 0.147841 sec) SUBFIND: ngb iteration 10: need to repeat for 67484860 particles. (took 0.133861 sec) SUBFIND: ngb iteration 11: need to repeat for 65237766 particles. (took 0.127017 sec) SUBFIND: ngb iteration 12: need to repeat for 64112827 particles. (took 0.125315 sec) SUBFIND: ngb iteration 13: need to repeat for 63567213 particles. (took 0.12738 sec) SUBFIND: ngb iteration 14: need to repeat for 63296605 particles. (took 0.127604 sec) SUBFIND: ngb iteration 15: need to repeat for 63156597 particles. (took 0.125317 sec) SUBFIND: ngb iteration 16: need to repeat for 63066020 particles. (took 0.120008 sec) SUBFIND: ngb iteration 17: need to repeat for 62971696 particles. (took 0.112405 sec) SUBFIND: ngb iteration 18: need to repeat for 62850351 particles. (took 0.105028 sec) SUBFIND: ngb iteration 19: need to repeat for 62697164 particles. (took 0.0982486 sec) SUBFIND: ngb iteration 20: need to repeat for 62506071 particles. (took 0.0944998 sec) SUBFIND: ngb iteration 21: need to repeat for 62245500 particles. (took 0.0941012 sec) SUBFIND: ngb iteration 22: need to repeat for 61872166 particles. (took 0.0945304 sec) SUBFIND: ngb iteration 23: need to repeat for 61326057 particles. (took 0.0950572 sec) SUBFIND: ngb iteration 24: need to repeat for 60519325 particles. (took 0.0969993 sec) SUBFIND: ngb iteration 25: need to repeat for 59336688 particles. (took 0.0995054 sec) SUBFIND: ngb iteration 26: need to repeat for 57582736 particles. (took 0.10156 sec) SUBFIND: ngb iteration 27: need to repeat for 55069716 particles. (took 0.103286 sec) SUBFIND: ngb iteration 28: need to repeat for 51604551 particles. (took 0.107286 sec) SUBFIND: ngb iteration 29: need to repeat for 47025305 particles. (took 0.111971 sec) SUBFIND: ngb iteration 30: need to repeat for 41461972 particles. (took 0.115278 sec) SUBFIND: ngb iteration 31: need to repeat for 35285258 particles. (took 0.118215 sec) SUBFIND: ngb iteration 32: need to repeat for 29108292 particles. (took 0.118449 sec) SUBFIND: ngb iteration 33: need to repeat for 23537227 particles. (took 0.113949 sec) SUBFIND: ngb iteration 34: need to repeat for 18739466 particles. (took 0.105758 sec) SUBFIND: ngb iteration 35: need to repeat for 14560488 particles. (took 0.0917446 sec) SUBFIND: ngb iteration 36: need to repeat for 10854007 particles. (took 0.0735731 sec) SUBFIND: ngb iteration 37: need to repeat for 7630814 particles. (took 0.0587817 sec) SUBFIND: ngb iteration 38: need to repeat for 4975318 particles. (took 0.0447605 sec) SUBFIND: ngb iteration 39: need to repeat for 2947621 particles. (took 0.0327706 sec) SUBFIND: ngb iteration 40: need to repeat for 1552157 particles. (took 0.0232916 sec) SUBFIND: ngb iteration 41: need to repeat for 707170 particles. (took 0.0149076 sec) SUBFIND: ngb iteration 42: need to repeat for 271920 particles. (took 0.00865313 sec) SUBFIND: ngb iteration 43: need to repeat for 86590 particles. (took 0.00474748 sec) SUBFIND: ngb iteration 44: need to repeat for 21769 particles. (took 0.00225264 sec) SUBFIND: ngb iteration 45: need to repeat for 4489 particles. (took 0.00111792 sec) SUBFIND: ngb iteration 46: need to repeat for 690 particles. (took 0.000457458 sec) SUBFIND: ngb iteration 47: need to repeat for 57 particles. (took 0.000324067 sec) SUBFIND: ngb iteration 48: need to repeat for 5 particles. (took 0.000244854 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 5.25872 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828931 particles, for threshold size factor 0.6) SUBFIND: The other 2169369 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00457594 sec SUBFIND: particle balance=1.11673 SUBFIND: subfind_exchange() took 0.235 sec SUBFIND: particle balance for processing=1.00046 SUBFIND: subdomain decomposition took 0.0512725 sec SUBFIND: serial subfind subdomain decomposition took 0.0507921 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2511 took 25.3548 sec SUBFIND: root-task=0: Serial processing of halo 0 took 25.4791 SUBFIND: Processing overall took (total time=27.876 sec) SUBFIND: 0 out of 2685 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258161 ALLOCATE: Changing to MaxPartSph = 121605 SUBFIND: subfind_exchange() (for return to original CPU) took 0.260654 sec TREE: Full tree construction for all particles. (presently allocated=80.0388 MB) GRAVTREE: Tree construction done. took 0.810188 sec =88641.8 NTopnodes=36889 NTopleaves=32278 tree-build-scalability=0.584323 SUBFIND: SO iteration 1: need to repeat for 2169352 halo centers. (took 0.0221712 sec) SUBFIND: SO iteration 2: need to repeat for 2169352 halo centers. (took 0.0199484 sec) SUBFIND: SO iteration 3: need to repeat for 2169352 halo centers. (took 0.0200422 sec) SUBFIND: SO iteration 4: need to repeat for 2169352 halo centers. (took 0.0199388 sec) SUBFIND: SO iteration 5: need to repeat for 2169352 halo centers. (took 0.02004 sec) SUBFIND: SO iteration 6: need to repeat for 2169352 halo centers. (took 0.019924 sec) SUBFIND: SO iteration 7: need to repeat for 2169352 halo centers. (took 0.0200252 sec) SUBFIND: SO iteration 8: need to repeat for 2169352 halo centers. (took 0.0198833 sec) SUBFIND: SO iteration 9: need to repeat for 2169352 halo centers. (took 0.0200932 sec) SUBFIND: SO iteration 10: need to repeat for 2169352 halo centers. (took 0.0202968 sec) SUBFIND: SO iteration 11: need to repeat for 2169352 halo centers. (took 0.0198661 sec) SUBFIND: SO iteration 12: need to repeat for 2169352 halo centers. (took 0.0199161 sec) SUBFIND: SO iteration 13: need to repeat for 2169352 halo centers. (took 0.020051 sec) SUBFIND: SO iteration 14: need to repeat for 2169352 halo centers. (took 0.0198307 sec) SUBFIND: SO iteration 15: need to repeat for 2169352 halo centers. (took 0.019787 sec) SUBFIND: SO iteration 16: need to repeat for 175444 halo centers. (took 0.0193781 sec) SUBFIND: SO iteration 17: need to repeat for 768 halo centers. (took 0.00683598 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000290222 sec) SUBFIND: SO iteration 1: need to repeat for 2169352 halo centers. (took 0.01992 sec) SUBFIND: SO iteration 2: need to repeat for 2169352 halo centers. (took 0.0195883 sec) SUBFIND: SO iteration 3: need to repeat for 2169352 halo centers. (took 0.0198414 sec) SUBFIND: SO iteration 4: need to repeat for 2169352 halo centers. (took 0.019807 sec) SUBFIND: SO iteration 5: need to repeat for 2169352 halo centers. (took 0.0198934 sec) SUBFIND: SO iteration 6: need to repeat for 2169352 halo centers. (took 0.0198624 sec) SUBFIND: SO iteration 7: need to repeat for 2169352 halo centers. (took 0.0200902 sec) SUBFIND: SO iteration 8: need to repeat for 2169352 halo centers. (took 0.0199304 sec) SUBFIND: SO iteration 9: need to repeat for 2169352 halo centers. (took 0.0200386 sec) SUBFIND: SO iteration 10: need to repeat for 2169352 halo centers. (took 0.0198484 sec) SUBFIND: SO iteration 11: need to repeat for 2169352 halo centers. (took 0.0201567 sec) SUBFIND: SO iteration 12: need to repeat for 2169352 halo centers. (took 0.0199755 sec) SUBFIND: SO iteration 13: need to repeat for 2169352 halo centers. (took 0.0198245 sec) SUBFIND: SO iteration 14: need to repeat for 2169352 halo centers. (took 0.0198457 sec) SUBFIND: SO iteration 15: need to repeat for 2169352 halo centers. (took 0.0197853 sec) SUBFIND: SO iteration 16: need to repeat for 101910 halo centers. (took 0.0194119 sec) SUBFIND: SO iteration 17: need to repeat for 462 halo centers. (took 0.004971 sec) SUBFIND: SO iteration 1: need to repeat for 2169352 halo centers. (took 0.0204935 sec) SUBFIND: SO iteration 2: need to repeat for 2169352 halo centers. (took 0.0197138 sec) SUBFIND: SO iteration 3: need to repeat for 2169352 halo centers. (took 0.0198967 sec) SUBFIND: SO iteration 4: need to repeat for 2169352 halo centers. (took 0.0199556 sec) SUBFIND: SO iteration 5: need to repeat for 2169352 halo centers. (took 0.0198344 sec) SUBFIND: SO iteration 6: need to repeat for 2169352 halo centers. (took 0.0197884 sec) SUBFIND: SO iteration 7: need to repeat for 2169352 halo centers. (took 0.0198467 sec) SUBFIND: SO iteration 8: need to repeat for 2169352 halo centers. (took 0.0197879 sec) SUBFIND: SO iteration 9: need to repeat for 2169352 halo centers. (took 0.019826 sec) SUBFIND: SO iteration 10: need to repeat for 2169352 halo centers. (took 0.0197895 sec) SUBFIND: SO iteration 11: need to repeat for 2169352 halo centers. (took 0.0197906 sec) SUBFIND: SO iteration 12: need to repeat for 2169352 halo centers. (took 0.0197685 sec) SUBFIND: SO iteration 13: need to repeat for 2169352 halo centers. (took 0.0199153 sec) SUBFIND: SO iteration 14: need to repeat for 2169352 halo centers. (took 0.0198671 sec) SUBFIND: SO iteration 15: need to repeat for 2169352 halo centers. (took 0.0198395 sec) SUBFIND: SO iteration 16: need to repeat for 178712 halo centers. (took 0.0194196 sec) SUBFIND: SO iteration 17: need to repeat for 794 halo centers. (took 0.00683531 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000303872 sec) SUBFIND: SO iteration 1: need to repeat for 2169352 halo centers. (took 0.0197955 sec) SUBFIND: SO iteration 2: need to repeat for 2169352 halo centers. (took 0.0197862 sec) SUBFIND: SO iteration 3: need to repeat for 2169352 halo centers. (took 0.019273 sec) SUBFIND: SO iteration 4: need to repeat for 2169352 halo centers. (took 0.0195074 sec) SUBFIND: SO iteration 5: need to repeat for 2169352 halo centers. (took 0.0199285 sec) SUBFIND: SO iteration 6: need to repeat for 2169352 halo centers. (took 0.0196702 sec) SUBFIND: SO iteration 7: need to repeat for 2169352 halo centers. (took 0.0195137 sec) SUBFIND: SO iteration 8: need to repeat for 2169352 halo centers. (took 0.0198399 sec) SUBFIND: SO iteration 9: need to repeat for 2169352 halo centers. (took 0.0201051 sec) SUBFIND: SO iteration 10: need to repeat for 2169352 halo centers. (took 0.0195271 sec) SUBFIND: SO iteration 11: need to repeat for 2169352 halo centers. (took 0.0195243 sec) SUBFIND: SO iteration 12: need to repeat for 2169352 halo centers. (took 0.0199698 sec) SUBFIND: SO iteration 13: need to repeat for 2169352 halo centers. (took 0.0195341 sec) SUBFIND: SO iteration 14: need to repeat for 2169352 halo centers. (took 0.0196433 sec) SUBFIND: SO iteration 15: need to repeat for 2169352 halo centers. (took 0.0195063 sec) SUBFIND: SO iteration 16: need to repeat for 1794010 halo centers. (took 0.0194714 sec) SUBFIND: SO iteration 17: need to repeat for 173073 halo centers. (took 0.0176244 sec) SUBFIND: SO iteration 18: need to repeat for 13396 halo centers. (took 0.0066387 sec) SUBFIND: determining spherical overdensity masses took 1.31974 sec SUBFIND: assembled and ordered groups and subhalos (took 0.264394 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.63087 sec, total size 811.542 MB, corresponds to effective I/O rate of 144.124 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.63256 sec SUBFIND: Finished with SUBFIND. (total time=41.8561 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2172010 SUBFIND: Largest subhalo has 124 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133827786 FOF: preparing output order of particles took 1.00642 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.25441 sec, total size 5316.08 MB, corresponds to effective I/O rate of 644.029 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 592 (rank 592 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 609 (rank 609 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 596 (rank 596 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 311 (rank 311 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 314 (rank 314 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.