TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186474.02 Mb (on task= 297), Smallest = 186404.77 Mb (on task= 405), Average = 186426.85 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5110.56 Mb (on task= 405), Smallest = 5041.31 Mb (on task= 297), Average = 5088.47 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5110.56 Mb (on task= 405), Smallest = 5041.31 Mb (on task= 297), Average = 5088.47 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 20), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-153.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.378 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 63119263 (tot= 63119263) masstab= 0 READIC: Type 1: 70707747 (tot= 70707747) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 1972 (tot= 1972) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.65643 sec, total size 6366.99 MB, corresponds to effective I/O rate of 1367.35 MB/sec READIC: Total number of particles : 133828982 INIT: Testing ID uniqueness... INIT: success. took=0.0677573 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32320, determination of top-level tree involved 6 iterations and took 0.384606 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=175 for nextra=125, reaching maximum imbalance of 1.11182|1.11203 DOMAIN: combining multiple-domains took 0.0162363 sec DOMAIN: exchange of 70709719 particles DOMAIN: particle exchange done. (took 0.217729 sec) DOMAIN: domain decomposition done. (took in total 0.624299 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.032441 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.2757 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0515061 sec =72287 NTopnodes=36937 NTopleaves=32320 FOF: Start linking particles (presently allocated=97.9712 MB) FOF: linking of small cells took 0.00077896 sec FOF: local links done (took 0.072766 sec, avg-work=0.0638235, imbalance=1.13139). FOF: Marked=180422 out of the 70707747 primaries which are linked FOF: begin linking across processors (presently allocated=98.9877 MB) FOF: have done 16831 cross links (processed 180422, took 0.00394124 sec) FOF: have done 3553 cross links (processed 91329, took 0.00317709 sec) FOF: have done 559 cross links (processed 12801, took 0.00257157 sec) FOF: have done 91 cross links (processed 1972, took 0.00238121 sec) FOF: have done 4 cross links (processed 303, took 0.00235504 sec) FOF: have done 2 cross links (processed 15, took 0.00229764 sec) FOF: have done 0 cross links (processed 3, took 0.00227042 sec) FOF: Local groups found. FOF: primary group finding took = 0.0970196 sec FOF: Start finding nearest dm-particle (presently allocated=97.9712 MB) FOF: fof-nearest iteration 1: need to repeat for 61863654 particles. (took = 0.0464159 sec) FOF: fof-nearest iteration 2: need to repeat for 55736986 particles. (took = 0.0504948 sec) FOF: fof-nearest iteration 3: need to repeat for 38675113 particles. (took = 0.054021 sec) FOF: fof-nearest iteration 4: need to repeat for 16281664 particles. (took = 0.0456551 sec) FOF: fof-nearest iteration 5: need to repeat for 2701835 particles. (took = 0.0244834 sec) FOF: fof-nearest iteration 6: need to repeat for 62098 particles. (took = 0.00680256 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.231965 sec FOF: compiling local group data and catalogue took = 0.0131054 sec FOF: Total number of FOF groups with at least 32 particles: 2123512 FOF: Largest FOF group has 126 particles. FOF: Total number of particles in FOF groups: 133828960 FOF: group properties are now allocated.. (presently allocated=89.5419 MB) FOF: computation of group properties took = 0.00640062 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.245421 sec FOF: Finished computing FoF groups. Complete work took 0.782448 sec (presently allocated=87.1436 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.2863 MB) GRAVTREE: Tree construction done. took 0.152146 sec =88334.8 NTopnodes=36937 NTopleaves=32320 tree-build-scalability=0.582336 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 126381716 particles. (took 0.420852 sec) SUBFIND: ngb iteration 2: need to repeat for 118601696 particles. (took 0.328431 sec) SUBFIND: ngb iteration 3: need to repeat for 111528078 particles. (took 0.27083 sec) SUBFIND: ngb iteration 4: need to repeat for 105729268 particles. (took 0.233647 sec) SUBFIND: ngb iteration 5: need to repeat for 100952035 particles. (took 0.21314 sec) SUBFIND: ngb iteration 6: need to repeat for 96175306 particles. (took 0.204195 sec) SUBFIND: ngb iteration 7: need to repeat for 89949054 particles. (took 0.195531 sec) SUBFIND: ngb iteration 8: need to repeat for 82072427 particles. (took 0.180755 sec) SUBFIND: ngb iteration 9: need to repeat for 74605715 particles. (took 0.161414 sec) SUBFIND: ngb iteration 10: need to repeat for 69342403 particles. (took 0.144273 sec) SUBFIND: ngb iteration 11: need to repeat for 66310635 particles. (took 0.133686 sec) SUBFIND: ngb iteration 12: need to repeat for 64740794 particles. (took 0.130613 sec) SUBFIND: ngb iteration 13: need to repeat for 63949526 particles. (took 0.130727 sec) SUBFIND: ngb iteration 14: need to repeat for 63543894 particles. (took 0.1309 sec) SUBFIND: ngb iteration 15: need to repeat for 63326107 particles. (took 0.127739 sec) SUBFIND: ngb iteration 16: need to repeat for 63186115 particles. (took 0.121632 sec) SUBFIND: ngb iteration 17: need to repeat for 63062425 particles. (took 0.112841 sec) SUBFIND: ngb iteration 18: need to repeat for 62926751 particles. (took 0.104174 sec) SUBFIND: ngb iteration 19: need to repeat for 62768402 particles. (took 0.0974257 sec) SUBFIND: ngb iteration 20: need to repeat for 62571678 particles. (took 0.0937721 sec) SUBFIND: ngb iteration 21: need to repeat for 62309628 particles. (took 0.093399 sec) SUBFIND: ngb iteration 22: need to repeat for 61940164 particles. (took 0.0935512 sec) SUBFIND: ngb iteration 23: need to repeat for 61414766 particles. (took 0.0946242 sec) SUBFIND: ngb iteration 24: need to repeat for 60648204 particles. (took 0.0959192 sec) SUBFIND: ngb iteration 25: need to repeat for 59524361 particles. (took 0.0979182 sec) SUBFIND: ngb iteration 26: need to repeat for 57897501 particles. (took 0.101203 sec) SUBFIND: ngb iteration 27: need to repeat for 55594131 particles. (took 0.103669 sec) SUBFIND: ngb iteration 28: need to repeat for 52422626 particles. (took 0.108137 sec) SUBFIND: ngb iteration 29: need to repeat for 48246355 particles. (took 0.114407 sec) SUBFIND: ngb iteration 30: need to repeat for 43177284 particles. (took 0.118518 sec) SUBFIND: ngb iteration 31: need to repeat for 37491446 particles. (took 0.124215 sec) SUBFIND: ngb iteration 32: need to repeat for 31743056 particles. (took 0.126281 sec) SUBFIND: ngb iteration 33: need to repeat for 26319844 particles. (took 0.120915 sec) SUBFIND: ngb iteration 34: need to repeat for 21414742 particles. (took 0.112887 sec) SUBFIND: ngb iteration 35: need to repeat for 16926500 particles. (took 0.0987801 sec) SUBFIND: ngb iteration 36: need to repeat for 12785516 particles. (took 0.0803766 sec) SUBFIND: ngb iteration 37: need to repeat for 9085381 particles. (took 0.0636345 sec) SUBFIND: ngb iteration 38: need to repeat for 5972614 particles. (took 0.0494548 sec) SUBFIND: ngb iteration 39: need to repeat for 3553300 particles. (took 0.0370318 sec) SUBFIND: ngb iteration 40: need to repeat for 1875967 particles. (took 0.0258868 sec) SUBFIND: ngb iteration 41: need to repeat for 852334 particles. (took 0.0169543 sec) SUBFIND: ngb iteration 42: need to repeat for 327633 particles. (took 0.0102576 sec) SUBFIND: ngb iteration 43: need to repeat for 103034 particles. (took 0.00548583 sec) SUBFIND: ngb iteration 44: need to repeat for 25778 particles. (took 0.00386057 sec) SUBFIND: ngb iteration 45: need to repeat for 4973 particles. (took 0.0012086 sec) SUBFIND: ngb iteration 46: need to repeat for 697 particles. (took 0.00061561 sec) SUBFIND: ngb iteration 47: need to repeat for 73 particles. (took 0.000355843 sec) SUBFIND: ngb iteration 48: need to repeat for 9 particles. (took 0.000270821 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 5.4417 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828982 particles, for threshold size factor 0.6) SUBFIND: The other 2123512 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00508993 sec SUBFIND: particle balance=1.11182 SUBFIND: subfind_exchange() took 0.238286 sec SUBFIND: particle balance for processing=1.0005 SUBFIND: subdomain decomposition took 0.051376 sec SUBFIND: serial subfind subdomain decomposition took 0.0509012 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2458 took 25.2882 sec SUBFIND: root-task=0: Serial processing of halo 0 took 25.4127 SUBFIND: Processing overall took (total time=27.2192 sec) SUBFIND: 0 out of 3212 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 121758 SUBFIND: subfind_exchange() (for return to original CPU) took 0.262455 sec TREE: Full tree construction for all particles. (presently allocated=79.8992 MB) GRAVTREE: Tree construction done. took 0.816287 sec =88334.8 NTopnodes=36937 NTopleaves=32320 tree-build-scalability=0.582336 SUBFIND: SO iteration 1: need to repeat for 2123499 halo centers. (took 0.0230673 sec) SUBFIND: SO iteration 2: need to repeat for 2123499 halo centers. (took 0.0208584 sec) SUBFIND: SO iteration 3: need to repeat for 2123499 halo centers. (took 0.0205856 sec) SUBFIND: SO iteration 4: need to repeat for 2123499 halo centers. (took 0.0199849 sec) SUBFIND: SO iteration 5: need to repeat for 2123499 halo centers. (took 0.0203543 sec) SUBFIND: SO iteration 6: need to repeat for 2123499 halo centers. (took 0.0205471 sec) SUBFIND: SO iteration 7: need to repeat for 2123499 halo centers. (took 0.0204238 sec) SUBFIND: SO iteration 8: need to repeat for 2123499 halo centers. (took 0.0208986 sec) SUBFIND: SO iteration 9: need to repeat for 2123499 halo centers. (took 0.0206401 sec) SUBFIND: SO iteration 10: need to repeat for 2123499 halo centers. (took 0.0204842 sec) SUBFIND: SO iteration 11: need to repeat for 2123499 halo centers. (took 0.0210809 sec) SUBFIND: SO iteration 12: need to repeat for 2123499 halo centers. (took 0.0214506 sec) SUBFIND: SO iteration 13: need to repeat for 2123499 halo centers. (took 0.0206813 sec) SUBFIND: SO iteration 14: need to repeat for 2123499 halo centers. (took 0.0211933 sec) SUBFIND: SO iteration 15: need to repeat for 2123499 halo centers. (took 0.0214036 sec) SUBFIND: SO iteration 16: need to repeat for 167209 halo centers. (took 0.0201309 sec) SUBFIND: SO iteration 17: need to repeat for 651 halo centers. (took 0.00720597 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000268314 sec) SUBFIND: SO iteration 1: need to repeat for 2123499 halo centers. (took 0.0209673 sec) SUBFIND: SO iteration 2: need to repeat for 2123499 halo centers. (took 0.0200858 sec) SUBFIND: SO iteration 3: need to repeat for 2123499 halo centers. (took 0.0206691 sec) SUBFIND: SO iteration 4: need to repeat for 2123499 halo centers. (took 0.0198446 sec) SUBFIND: SO iteration 5: need to repeat for 2123499 halo centers. (took 0.0206226 sec) SUBFIND: SO iteration 6: need to repeat for 2123499 halo centers. (took 0.020487 sec) SUBFIND: SO iteration 7: need to repeat for 2123499 halo centers. (took 0.0204828 sec) SUBFIND: SO iteration 8: need to repeat for 2123499 halo centers. (took 0.0208068 sec) SUBFIND: SO iteration 9: need to repeat for 2123499 halo centers. (took 0.0208658 sec) SUBFIND: SO iteration 10: need to repeat for 2123499 halo centers. (took 0.0214406 sec) SUBFIND: SO iteration 11: need to repeat for 2123499 halo centers. (took 0.0202663 sec) SUBFIND: SO iteration 12: need to repeat for 2123499 halo centers. (took 0.0204996 sec) SUBFIND: SO iteration 13: need to repeat for 2123499 halo centers. (took 0.0211279 sec) SUBFIND: SO iteration 14: need to repeat for 2123499 halo centers. (took 0.0204099 sec) SUBFIND: SO iteration 15: need to repeat for 2123499 halo centers. (took 0.0205331 sec) SUBFIND: SO iteration 16: need to repeat for 95944 halo centers. (took 0.0199697 sec) SUBFIND: SO iteration 17: need to repeat for 360 halo centers. (took 0.00495232 sec) SUBFIND: SO iteration 1: need to repeat for 2123499 halo centers. (took 0.0205045 sec) SUBFIND: SO iteration 2: need to repeat for 2123499 halo centers. (took 0.0202758 sec) SUBFIND: SO iteration 3: need to repeat for 2123499 halo centers. (took 0.0201982 sec) SUBFIND: SO iteration 4: need to repeat for 2123499 halo centers. (took 0.0200902 sec) SUBFIND: SO iteration 5: need to repeat for 2123499 halo centers. (took 0.0217471 sec) SUBFIND: SO iteration 6: need to repeat for 2123499 halo centers. (took 0.0216203 sec) SUBFIND: SO iteration 7: need to repeat for 2123499 halo centers. (took 0.0212808 sec) SUBFIND: SO iteration 8: need to repeat for 2123499 halo centers. (took 0.0204471 sec) SUBFIND: SO iteration 9: need to repeat for 2123499 halo centers. (took 0.0211961 sec) SUBFIND: SO iteration 10: need to repeat for 2123499 halo centers. (took 0.0218242 sec) SUBFIND: SO iteration 11: need to repeat for 2123499 halo centers. (took 0.0203337 sec) SUBFIND: SO iteration 12: need to repeat for 2123499 halo centers. (took 0.0206697 sec) SUBFIND: SO iteration 13: need to repeat for 2123499 halo centers. (took 0.0204383 sec) SUBFIND: SO iteration 14: need to repeat for 2123499 halo centers. (took 0.0203189 sec) SUBFIND: SO iteration 15: need to repeat for 2123499 halo centers. (took 0.0202407 sec) SUBFIND: SO iteration 16: need to repeat for 169579 halo centers. (took 0.0198159 sec) SUBFIND: SO iteration 17: need to repeat for 654 halo centers. (took 0.00725861 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000267016 sec) SUBFIND: SO iteration 1: need to repeat for 2123499 halo centers. (took 0.0206254 sec) SUBFIND: SO iteration 2: need to repeat for 2123499 halo centers. (took 0.0204934 sec) SUBFIND: SO iteration 3: need to repeat for 2123499 halo centers. (took 0.0200551 sec) SUBFIND: SO iteration 4: need to repeat for 2123499 halo centers. (took 0.0203706 sec) SUBFIND: SO iteration 5: need to repeat for 2123499 halo centers. (took 0.0209984 sec) SUBFIND: SO iteration 6: need to repeat for 2123499 halo centers. (took 0.0198598 sec) SUBFIND: SO iteration 7: need to repeat for 2123499 halo centers. (took 0.0202003 sec) SUBFIND: SO iteration 8: need to repeat for 2123499 halo centers. (took 0.020881 sec) SUBFIND: SO iteration 9: need to repeat for 2123499 halo centers. (took 0.0218555 sec) SUBFIND: SO iteration 10: need to repeat for 2123499 halo centers. (took 0.0220424 sec) SUBFIND: SO iteration 11: need to repeat for 2123499 halo centers. (took 0.0211059 sec) SUBFIND: SO iteration 12: need to repeat for 2123499 halo centers. (took 0.0210015 sec) SUBFIND: SO iteration 13: need to repeat for 2123499 halo centers. (took 0.0214565 sec) SUBFIND: SO iteration 14: need to repeat for 2123499 halo centers. (took 0.020847 sec) SUBFIND: SO iteration 15: need to repeat for 2123499 halo centers. (took 0.0207535 sec) SUBFIND: SO iteration 16: need to repeat for 1744579 halo centers. (took 0.0204991 sec) SUBFIND: SO iteration 17: need to repeat for 162595 halo centers. (took 0.0184047 sec) SUBFIND: SO iteration 18: need to repeat for 12043 halo centers. (took 0.00667356 sec) SUBFIND: determining spherical overdensity masses took 1.37705 sec SUBFIND: assembled and ordered groups and subhalos (took 0.270378 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.62976 sec, total size 794.508 MB, corresponds to effective I/O rate of 141.127 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.63151 sec SUBFIND: Finished with SUBFIND. (total time=41.4587 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2126684 SUBFIND: Largest subhalo has 126 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828055 FOF: preparing output order of particles took 0.943906 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.6524 sec, total size 5317 MB, corresponds to effective I/O rate of 614.511 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 233 (rank 233 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 713 (rank 713 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 718 (rank 718 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 726 (rank 726 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 727 (rank 727 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.