TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186473.79 Mb (on task= 621), Smallest = 186392.88 Mb (on task= 432), Average = 186425.97 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5122.45 Mb (on task= 432), Smallest = 5041.55 Mb (on task= 621), Average = 5089.36 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5122.45 Mb (on task= 432), Smallest = 5041.55 Mb (on task= 621), Average = 5089.36 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 28), Smallest = 95321.34 Mb (on task= 3), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c106-162.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.8084 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 64245165 (tot= 64245165) masstab= 0 READIC: Type 1: 69575556 (tot= 69575556) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 8256 (tot= 8256) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.66645 sec, total size 6371.28 MB, corresponds to effective I/O rate of 1365.34 MB/sec READIC: Total number of particles : 133828977 INIT: Testing ID uniqueness... INIT: success. took=0.0626299 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: NTopleaves=30661, determination of top-level tree involved 6 iterations and took 0.358619 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=187 for nextra=157, reaching maximum imbalance of 1.12195|1.1221 DOMAIN: combining multiple-domains took 0.0150987 sec DOMAIN: exchange of 69583812 particles DOMAIN: particle exchange done. (took 0.213107 sec) DOMAIN: domain decomposition done. (took in total 0.592379 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0334521 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=86.6713 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0510079 sec =66556.1 NTopnodes=35041 NTopleaves=30661 FOF: Start linking particles (presently allocated=98.5277 MB) FOF: linking of small cells took 0.000783686 sec FOF: local links done (took 0.0741808 sec, avg-work=0.065147, imbalance=1.12877). FOF: Marked=178525 out of the 69575556 primaries which are linked FOF: begin linking across processors (presently allocated=99.5371 MB) FOF: have done 14839 cross links (processed 178525, took 0.00379704 sec) FOF: have done 3404 cross links (processed 90813, took 0.00312155 sec) FOF: have done 559 cross links (processed 13449, took 0.00260671 sec) FOF: have done 94 cross links (processed 2058, took 0.00240717 sec) FOF: have done 16 cross links (processed 347, took 0.00236354 sec) FOF: have done 2 cross links (processed 50, took 0.00234047 sec) FOF: have done 0 cross links (processed 4, took 0.0023383 sec) FOF: Local groups found. FOF: primary group finding took = 0.0985583 sec FOF: Start finding nearest dm-particle (presently allocated=98.5277 MB) FOF: fof-nearest iteration 1: need to repeat for 62725323 particles. (took = 0.0490559 sec) FOF: fof-nearest iteration 2: need to repeat for 55338080 particles. (took = 0.053758 sec) FOF: fof-nearest iteration 3: need to repeat for 35948289 particles. (took = 0.0577962 sec) FOF: fof-nearest iteration 4: need to repeat for 13638703 particles. (took = 0.0460421 sec) FOF: fof-nearest iteration 5: need to repeat for 2099302 particles. (took = 0.0223214 sec) FOF: fof-nearest iteration 6: need to repeat for 48772 particles. (took = 0.00605113 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.239219 sec FOF: compiling local group data and catalogue took = 0.0131748 sec FOF: Total number of FOF groups with at least 32 particles: 1622263 FOF: Largest FOF group has 166 particles. FOF: Total number of particles in FOF groups: 133828948 FOF: group properties are now allocated.. (presently allocated=89.7886 MB) FOF: computation of group properties took = 0.00578786 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.245898 sec FOF: Finished computing FoF groups. Complete work took 0.789584 sec (presently allocated=87.3462 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.5355 MB) GRAVTREE: Tree construction done. took 0.15522 sec =82360.2 NTopnodes=35041 NTopleaves=30661 tree-build-scalability=0.575032 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133724738 particles. (took 0.43385 sec) SUBFIND: ngb iteration 2: need to repeat for 133532357 particles. (took 0.37079 sec) SUBFIND: ngb iteration 3: need to repeat for 133177735 particles. (took 0.340174 sec) SUBFIND: ngb iteration 4: need to repeat for 132491233 particles. (took 0.32417 sec) SUBFIND: ngb iteration 5: need to repeat for 131138077 particles. (took 0.318344 sec) SUBFIND: ngb iteration 6: need to repeat for 128445288 particles. (took 0.319286 sec) SUBFIND: ngb iteration 7: need to repeat for 123158302 particles. (took 0.321802 sec) SUBFIND: ngb iteration 8: need to repeat for 113585818 particles. (took 0.316402 sec) SUBFIND: ngb iteration 9: need to repeat for 99628308 particles. (took 0.294201 sec) SUBFIND: ngb iteration 10: need to repeat for 85711271 particles. (took 0.255438 sec) SUBFIND: ngb iteration 11: need to repeat for 75973077 particles. (took 0.215404 sec) SUBFIND: ngb iteration 12: need to repeat for 70421322 particles. (took 0.18721 sec) SUBFIND: ngb iteration 13: need to repeat for 67520096 particles. (took 0.172823 sec) SUBFIND: ngb iteration 14: need to repeat for 66027812 particles. (took 0.165484 sec) SUBFIND: ngb iteration 15: need to repeat for 65218875 particles. (took 0.157865 sec) SUBFIND: ngb iteration 16: need to repeat for 64739419 particles. (took 0.148072 sec) SUBFIND: ngb iteration 17: need to repeat for 64424900 particles. (took 0.137419 sec) SUBFIND: ngb iteration 18: need to repeat for 64199030 particles. (took 0.127787 sec) SUBFIND: ngb iteration 19: need to repeat for 64022607 particles. (took 0.119619 sec) SUBFIND: ngb iteration 20: need to repeat for 63866006 particles. (took 0.115491 sec) SUBFIND: ngb iteration 21: need to repeat for 63700727 particles. (took 0.112734 sec) SUBFIND: ngb iteration 22: need to repeat for 63501377 particles. (took 0.112868 sec) SUBFIND: ngb iteration 23: need to repeat for 63250087 particles. (took 0.114514 sec) SUBFIND: ngb iteration 24: need to repeat for 62916704 particles. (took 0.117188 sec) SUBFIND: ngb iteration 25: need to repeat for 62473840 particles. (took 0.119931 sec) SUBFIND: ngb iteration 26: need to repeat for 61879929 particles. (took 0.123878 sec) SUBFIND: ngb iteration 27: need to repeat for 61083532 particles. (took 0.128845 sec) SUBFIND: ngb iteration 28: need to repeat for 60027157 particles. (took 0.136936 sec) SUBFIND: ngb iteration 29: need to repeat for 58624927 particles. (took 0.148757 sec) SUBFIND: ngb iteration 30: need to repeat for 56781532 particles. (took 0.161985 sec) SUBFIND: ngb iteration 31: need to repeat for 54395669 particles. (took 0.176038 sec) SUBFIND: ngb iteration 32: need to repeat for 51367938 particles. (took 0.186924 sec) SUBFIND: ngb iteration 33: need to repeat for 47596098 particles. (took 0.194323 sec) SUBFIND: ngb iteration 34: need to repeat for 43014777 particles. (took 0.188739 sec) SUBFIND: ngb iteration 35: need to repeat for 37648759 particles. (took 0.180152 sec) SUBFIND: ngb iteration 36: need to repeat for 31633283 particles. (took 0.16531 sec) SUBFIND: ngb iteration 37: need to repeat for 25238415 particles. (took 0.144137 sec) SUBFIND: ngb iteration 38: need to repeat for 18867968 particles. (took 0.123222 sec) SUBFIND: ngb iteration 39: need to repeat for 13019062 particles. (took 0.100332 sec) SUBFIND: ngb iteration 40: need to repeat for 8146613 particles. (took 0.0769207 sec) SUBFIND: ngb iteration 41: need to repeat for 4521736 particles. (took 0.0555644 sec) SUBFIND: ngb iteration 42: need to repeat for 2168353 particles. (took 0.0365212 sec) SUBFIND: ngb iteration 43: need to repeat for 877333 particles. (took 0.0210941 sec) SUBFIND: ngb iteration 44: need to repeat for 286110 particles. (took 0.011653 sec) SUBFIND: ngb iteration 45: need to repeat for 72229 particles. (took 0.0056945 sec) SUBFIND: ngb iteration 46: need to repeat for 13234 particles. (took 0.00233388 sec) SUBFIND: ngb iteration 47: need to repeat for 1779 particles. (took 0.000839129 sec) SUBFIND: ngb iteration 48: need to repeat for 119 particles. (took 0.000439873 sec) SUBFIND: ngb iteration 49: need to repeat for 17 particles. (took 0.000268586 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 7.79406 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133828977 particles, for threshold size factor 0.6) SUBFIND: The other 1622263 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00421198 sec SUBFIND: particle balance=1.12195 SUBFIND: subfind_exchange() took 0.23937 sec SUBFIND: particle balance for processing=1.00074 SUBFIND: subdomain decomposition took 0.051301 sec SUBFIND: serial subfind subdomain decomposition took 0.050769 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1878 took 19.8201 sec SUBFIND: root-task=0: Serial processing of halo 0 took 19.9443 SUBFIND: Processing overall took (total time=20.3287 sec) SUBFIND: 0 out of 10030 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258160 ALLOCATE: Changing to MaxPartSph = 123930 SUBFIND: subfind_exchange() (for return to original CPU) took 0.265156 sec TREE: Full tree construction for all particles. (presently allocated=80.447 MB) GRAVTREE: Tree construction done. took 0.779704 sec =82360.2 NTopnodes=35041 NTopleaves=30661 tree-build-scalability=0.575032 SUBFIND: SO iteration 1: need to repeat for 1622261 halo centers. (took 0.0221353 sec) SUBFIND: SO iteration 2: need to repeat for 1622261 halo centers. (took 0.0189323 sec) SUBFIND: SO iteration 3: need to repeat for 1622261 halo centers. (took 0.0195326 sec) SUBFIND: SO iteration 4: need to repeat for 1622261 halo centers. (took 0.0182681 sec) SUBFIND: SO iteration 5: need to repeat for 1622261 halo centers. (took 0.0182281 sec) SUBFIND: SO iteration 6: need to repeat for 1622261 halo centers. (took 0.0190177 sec) SUBFIND: SO iteration 7: need to repeat for 1622261 halo centers. (took 0.0215475 sec) SUBFIND: SO iteration 8: need to repeat for 1622261 halo centers. (took 0.0182382 sec) SUBFIND: SO iteration 9: need to repeat for 1622261 halo centers. (took 0.0183898 sec) SUBFIND: SO iteration 10: need to repeat for 1622261 halo centers. (took 0.0182211 sec) SUBFIND: SO iteration 11: need to repeat for 1622261 halo centers. (took 0.0181727 sec) SUBFIND: SO iteration 12: need to repeat for 1622261 halo centers. (took 0.0181373 sec) SUBFIND: SO iteration 13: need to repeat for 1622261 halo centers. (took 0.018198 sec) SUBFIND: SO iteration 14: need to repeat for 1622261 halo centers. (took 0.0187753 sec) SUBFIND: SO iteration 15: need to repeat for 1622261 halo centers. (took 0.0182378 sec) SUBFIND: SO iteration 16: need to repeat for 89112 halo centers. (took 0.0190287 sec) SUBFIND: SO iteration 17: need to repeat for 910 halo centers. (took 0.00458291 sec) SUBFIND: SO iteration 1: need to repeat for 1622261 halo centers. (took 0.0181959 sec) SUBFIND: SO iteration 2: need to repeat for 1622261 halo centers. (took 0.0181721 sec) SUBFIND: SO iteration 3: need to repeat for 1622261 halo centers. (took 0.0183513 sec) SUBFIND: SO iteration 4: need to repeat for 1622261 halo centers. (took 0.0183273 sec) SUBFIND: SO iteration 5: need to repeat for 1622261 halo centers. (took 0.019144 sec) SUBFIND: SO iteration 6: need to repeat for 1622261 halo centers. (took 0.0188437 sec) SUBFIND: SO iteration 7: need to repeat for 1622261 halo centers. (took 0.0192316 sec) SUBFIND: SO iteration 8: need to repeat for 1622261 halo centers. (took 0.0195547 sec) SUBFIND: SO iteration 9: need to repeat for 1622261 halo centers. (took 0.0194464 sec) SUBFIND: SO iteration 10: need to repeat for 1622261 halo centers. (took 0.0191655 sec) SUBFIND: SO iteration 11: need to repeat for 1622261 halo centers. (took 0.0194096 sec) SUBFIND: SO iteration 12: need to repeat for 1622261 halo centers. (took 0.0202391 sec) SUBFIND: SO iteration 13: need to repeat for 1622261 halo centers. (took 0.0188443 sec) SUBFIND: SO iteration 14: need to repeat for 1622261 halo centers. (took 0.0227637 sec) SUBFIND: SO iteration 15: need to repeat for 1622261 halo centers. (took 0.0184919 sec) SUBFIND: SO iteration 16: need to repeat for 49426 halo centers. (took 0.0231796 sec) SUBFIND: SO iteration 17: need to repeat for 280 halo centers. (took 0.00327153 sec) SUBFIND: SO iteration 1: need to repeat for 1622261 halo centers. (took 0.0227802 sec) SUBFIND: SO iteration 2: need to repeat for 1622261 halo centers. (took 0.0181122 sec) SUBFIND: SO iteration 3: need to repeat for 1622261 halo centers. (took 0.0182949 sec) SUBFIND: SO iteration 4: need to repeat for 1622261 halo centers. (took 0.0182469 sec) SUBFIND: SO iteration 5: need to repeat for 1622261 halo centers. (took 0.0192891 sec) SUBFIND: SO iteration 6: need to repeat for 1622261 halo centers. (took 0.0181665 sec) SUBFIND: SO iteration 7: need to repeat for 1622261 halo centers. (took 0.0181694 sec) SUBFIND: SO iteration 8: need to repeat for 1622261 halo centers. (took 0.0181705 sec) SUBFIND: SO iteration 9: need to repeat for 1622261 halo centers. (took 0.0182021 sec) SUBFIND: SO iteration 10: need to repeat for 1622261 halo centers. (took 0.0182279 sec) SUBFIND: SO iteration 11: need to repeat for 1622261 halo centers. (took 0.0181164 sec) SUBFIND: SO iteration 12: need to repeat for 1622261 halo centers. (took 0.0181883 sec) SUBFIND: SO iteration 13: need to repeat for 1622261 halo centers. (took 0.0185422 sec) SUBFIND: SO iteration 14: need to repeat for 1622261 halo centers. (took 0.018208 sec) SUBFIND: SO iteration 15: need to repeat for 1622261 halo centers. (took 0.0181634 sec) SUBFIND: SO iteration 16: need to repeat for 90829 halo centers. (took 0.0179032 sec) SUBFIND: SO iteration 17: need to repeat for 943 halo centers. (took 0.0046231 sec) SUBFIND: SO iteration 1: need to repeat for 1622261 halo centers. (took 0.0181444 sec) SUBFIND: SO iteration 2: need to repeat for 1622261 halo centers. (took 0.0181173 sec) SUBFIND: SO iteration 3: need to repeat for 1622261 halo centers. (took 0.0178277 sec) SUBFIND: SO iteration 4: need to repeat for 1622261 halo centers. (took 0.0182613 sec) SUBFIND: SO iteration 5: need to repeat for 1622261 halo centers. (took 0.0181369 sec) SUBFIND: SO iteration 6: need to repeat for 1622261 halo centers. (took 0.0180429 sec) SUBFIND: SO iteration 7: need to repeat for 1622261 halo centers. (took 0.0182166 sec) SUBFIND: SO iteration 8: need to repeat for 1622261 halo centers. (took 0.0181932 sec) SUBFIND: SO iteration 9: need to repeat for 1622261 halo centers. (took 0.0180823 sec) SUBFIND: SO iteration 10: need to repeat for 1622261 halo centers. (took 0.0180738 sec) SUBFIND: SO iteration 11: need to repeat for 1622261 halo centers. (took 0.0179833 sec) SUBFIND: SO iteration 12: need to repeat for 1622261 halo centers. (took 0.0179925 sec) SUBFIND: SO iteration 13: need to repeat for 1622261 halo centers. (took 0.0179998 sec) SUBFIND: SO iteration 14: need to repeat for 1622261 halo centers. (took 0.0180334 sec) SUBFIND: SO iteration 15: need to repeat for 1622261 halo centers. (took 0.0181713 sec) SUBFIND: SO iteration 16: need to repeat for 1202162 halo centers. (took 0.0180211 sec) SUBFIND: SO iteration 17: need to repeat for 84672 halo centers. (took 0.0153669 sec) SUBFIND: SO iteration 18: need to repeat for 7133 halo centers. (took 0.00435847 sec) SUBFIND: SO iteration 19: need to repeat for 4 halo centers. (took 0.000670888 sec) SUBFIND: determining spherical overdensity masses took 1.23715 sec SUBFIND: assembled and ordered groups and subhalos (took 0.259788 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.64849 sec, total size 608.527 MB, corresponds to effective I/O rate of 107.733 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.64965 sec SUBFIND: Finished with SUBFIND. (total time=36.7567 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1632261 SUBFIND: Largest subhalo has 166 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828644 FOF: preparing output order of particles took 0.944936 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.07168 sec, total size 5329.88 MB, corresponds to effective I/O rate of 660.319 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 285 (rank 285 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 153 (rank 153 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 155 (rank 155 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 166 (rank 166 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 150 (rank 150 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 165 (rank 165 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.