TACC: Starting up job 4244607 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186470.02 Mb (on task= 297), Smallest = 186396.05 Mb (on task= 270), Average = 186425.72 Mb Total Mem: Largest = 191515.34 Mb (on task= 27), Smallest = 191515.20 Mb (on task= 0), Average = 191515.33 Mb Committed_AS: Largest = 5119.28 Mb (on task= 270), Smallest = 5045.31 Mb (on task= 297), Average = 5089.60 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5119.28 Mb (on task= 270), Smallest = 5045.31 Mb (on task= 297), Average = 5089.60 Mb avail /dev/shm: Largest = 95321.44 Mb (on task= 27), Smallest = 95321.34 Mb (on task= 2), Average = 95321.42 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c105-181.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 17.0634 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_086.hdf5' contains: READIC: Type 0 (gas): 65225192 (tot= 65225192) masstab= 0 READIC: Type 1: 68572228 (tot= 68572228) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 31599 (tot= 31599) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_086.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.54451 sec, total size 6375.02 MB, corresponds to effective I/O rate of 1402.79 MB/sec READIC: Total number of particles : 133829019 INIT: Testing ID uniqueness... INIT: success. took=0.0588304 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32208, determination of top-level tree involved 6 iterations and took 0.380842 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=183 for nextra=196, reaching maximum imbalance of 1.11939|1.11973 DOMAIN: combining multiple-domains took 0.0154002 sec DOMAIN: exchange of 68603827 particles DOMAIN: particle exchange done. (took 0.208591 sec) DOMAIN: domain decomposition done. (took in total 0.610344 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0341629 sec. INIT: Converting u -> entropy All.cf_a3inv=729 FOF: Begin to compute FoF group catalogue... (presently allocated=87.0648 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0899497 sec =64813.2 NTopnodes=36809 NTopleaves=32208 FOF: Start linking particles (presently allocated=97.1671 MB) FOF: linking of small cells took 0.00101318 sec FOF: local links done (took 0.0765832 sec, avg-work=0.0672231, imbalance=1.13171). FOF: Marked=180964 out of the 68572228 primaries which are linked FOF: begin linking across processors (presently allocated=98.1877 MB) FOF: have done 13331 cross links (processed 180964, took 0.00371053 sec) FOF: have done 3235 cross links (processed 92060, took 0.0029781 sec) FOF: have done 552 cross links (processed 13571, took 0.00255709 sec) FOF: have done 108 cross links (processed 2324, took 0.00238046 sec) FOF: have done 17 cross links (processed 508, took 0.00233103 sec) FOF: have done 1 cross links (processed 78, took 0.00230403 sec) FOF: have done 0 cross links (processed 2, took 0.00231481 sec) FOF: Local groups found. FOF: primary group finding took = 0.100732 sec FOF: Start finding nearest dm-particle (presently allocated=97.1671 MB) FOF: fof-nearest iteration 1: need to repeat for 63425619 particles. (took = 0.0498543 sec) FOF: fof-nearest iteration 2: need to repeat for 54624292 particles. (took = 0.0562287 sec) FOF: fof-nearest iteration 3: need to repeat for 32720212 particles. (took = 0.0606764 sec) FOF: fof-nearest iteration 4: need to repeat for 11147536 particles. (took = 0.0453071 sec) FOF: fof-nearest iteration 5: need to repeat for 1613213 particles. (took = 0.01996 sec) FOF: fof-nearest iteration 6: need to repeat for 37325 particles. (took = 0.00510376 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.241328 sec FOF: compiling local group data and catalogue took = 0.0127789 sec FOF: Total number of FOF groups with at least 32 particles: 1203522 FOF: Largest FOF group has 112 particles. FOF: Total number of particles in FOF groups: 133828975 FOF: group properties are now allocated.. (presently allocated=90.0564 MB) FOF: computation of group properties took = 0.0052969 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.238216 sec FOF: Finished computing FoF groups. Complete work took 0.814199 sec (presently allocated=87.5762 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.0505 MB) GRAVTREE: Tree construction done. took 0.274451 sec =80330 NTopnodes=36809 NTopleaves=32208 tree-build-scalability=0.542308 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 130624103 particles. (took 0.444472 sec) SUBFIND: ngb iteration 2: need to repeat for 128579182 particles. (took 0.394776 sec) SUBFIND: ngb iteration 3: need to repeat for 126543705 particles. (took 0.371663 sec) SUBFIND: ngb iteration 4: need to repeat for 124373165 particles. (took 0.351773 sec) SUBFIND: ngb iteration 5: need to repeat for 121545209 particles. (took 0.332767 sec) SUBFIND: ngb iteration 6: need to repeat for 117000707 particles. (took 0.326929 sec) SUBFIND: ngb iteration 7: need to repeat for 109087414 particles. (took 0.315614 sec) SUBFIND: ngb iteration 8: need to repeat for 97469766 particles. (took 0.293751 sec) SUBFIND: ngb iteration 9: need to repeat for 85463864 particles. (took 0.263539 sec) SUBFIND: ngb iteration 10: need to repeat for 76670530 particles. (took 0.228735 sec) SUBFIND: ngb iteration 11: need to repeat for 71475857 particles. (took 0.207181 sec) SUBFIND: ngb iteration 12: need to repeat for 68725256 particles. (took 0.196771 sec) SUBFIND: ngb iteration 13: need to repeat for 67210479 particles. (took 0.193907 sec) SUBFIND: ngb iteration 14: need to repeat for 65858159 particles. (took 0.192163 sec) SUBFIND: ngb iteration 15: need to repeat for 63974351 particles. (took 0.188262 sec) SUBFIND: ngb iteration 16: need to repeat for 61511259 particles. (took 0.176105 sec) SUBFIND: ngb iteration 17: need to repeat for 59196559 particles. (took 0.160214 sec) SUBFIND: ngb iteration 18: need to repeat for 57720345 particles. (took 0.1443 sec) SUBFIND: ngb iteration 19: need to repeat for 57044789 particles. (took 0.132174 sec) SUBFIND: ngb iteration 20: need to repeat for 56751950 particles. (took 0.125007 sec) SUBFIND: ngb iteration 21: need to repeat for 56555331 particles. (took 0.122354 sec) SUBFIND: ngb iteration 22: need to repeat for 56359890 particles. (took 0.121945 sec) SUBFIND: ngb iteration 23: need to repeat for 56125382 particles. (took 0.122504 sec) SUBFIND: ngb iteration 24: need to repeat for 55827346 particles. (took 0.123691 sec) SUBFIND: ngb iteration 25: need to repeat for 55427937 particles. (took 0.12641 sec) SUBFIND: ngb iteration 26: need to repeat for 54893714 particles. (took 0.129624 sec) SUBFIND: ngb iteration 27: need to repeat for 54176378 particles. (took 0.135365 sec) SUBFIND: ngb iteration 28: need to repeat for 53215186 particles. (took 0.14088 sec) SUBFIND: ngb iteration 29: need to repeat for 51942012 particles. (took 0.150786 sec) SUBFIND: ngb iteration 30: need to repeat for 50258932 particles. (took 0.162382 sec) SUBFIND: ngb iteration 31: need to repeat for 48074927 particles. (took 0.173523 sec) SUBFIND: ngb iteration 32: need to repeat for 45276629 particles. (took 0.184032 sec) SUBFIND: ngb iteration 33: need to repeat for 41795777 particles. (took 0.193437 sec) SUBFIND: ngb iteration 34: need to repeat for 37594093 particles. (took 0.194616 sec) SUBFIND: ngb iteration 35: need to repeat for 32684628 particles. (took 0.181232 sec) SUBFIND: ngb iteration 36: need to repeat for 27197547 particles. (took 0.165527 sec) SUBFIND: ngb iteration 37: need to repeat for 21395846 particles. (took 0.139255 sec) SUBFIND: ngb iteration 38: need to repeat for 15687320 particles. (took 0.116376 sec) SUBFIND: ngb iteration 39: need to repeat for 10541673 particles. (took 0.0884622 sec) SUBFIND: ngb iteration 40: need to repeat for 6348399 particles. (took 0.0660652 sec) SUBFIND: ngb iteration 41: need to repeat for 3347275 particles. (took 0.0445876 sec) SUBFIND: ngb iteration 42: need to repeat for 1497583 particles. (took 0.0284551 sec) SUBFIND: ngb iteration 43: need to repeat for 548315 particles. (took 0.015968 sec) SUBFIND: ngb iteration 44: need to repeat for 161366 particles. (took 0.008359 sec) SUBFIND: ngb iteration 45: need to repeat for 36328 particles. (took 0.00336715 sec) SUBFIND: ngb iteration 46: need to repeat for 6372 particles. (took 0.00135783 sec) SUBFIND: ngb iteration 47: need to repeat for 886 particles. (took 0.000727465 sec) SUBFIND: ngb iteration 48: need to repeat for 74 particles. (took 0.00039405 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 7.98582 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 133829019 particles, for threshold size factor 0.6) SUBFIND: The other 1203522 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00365227 sec SUBFIND: particle balance=1.11939 SUBFIND: subfind_exchange() took 0.239528 sec SUBFIND: particle balance for processing=1.00003 SUBFIND: subdomain decomposition took 0.0512428 sec SUBFIND: serial subfind subdomain decomposition took 0.0505027 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1393 took 15.0263 sec SUBFIND: root-task=0: Serial processing of halo 0 took 15.1501 SUBFIND: Processing overall took (total time=15.493 sec) SUBFIND: 0 out of 17830 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258161 ALLOCATE: Changing to MaxPartSph = 125821 SUBFIND: subfind_exchange() (for return to original CPU) took 0.266671 sec TREE: Full tree construction for all particles. (presently allocated=80.9661 MB) GRAVTREE: Tree construction done. took 0.747005 sec =80330 NTopnodes=36809 NTopleaves=32208 tree-build-scalability=0.542308 SUBFIND: SO iteration 1: need to repeat for 1203522 halo centers. (took 0.0184252 sec) SUBFIND: SO iteration 2: need to repeat for 1203522 halo centers. (took 0.017149 sec) SUBFIND: SO iteration 3: need to repeat for 1203522 halo centers. (took 0.0168979 sec) SUBFIND: SO iteration 4: need to repeat for 1203522 halo centers. (took 0.0167723 sec) SUBFIND: SO iteration 5: need to repeat for 1203522 halo centers. (took 0.0172446 sec) SUBFIND: SO iteration 6: need to repeat for 1203522 halo centers. (took 0.0172039 sec) SUBFIND: SO iteration 7: need to repeat for 1203522 halo centers. (took 0.0169505 sec) SUBFIND: SO iteration 8: need to repeat for 1203522 halo centers. (took 0.0173701 sec) SUBFIND: SO iteration 9: need to repeat for 1203522 halo centers. (took 0.0171834 sec) SUBFIND: SO iteration 10: need to repeat for 1203522 halo centers. (took 0.0169631 sec) SUBFIND: SO iteration 11: need to repeat for 1203522 halo centers. (took 0.0165462 sec) SUBFIND: SO iteration 12: need to repeat for 1203522 halo centers. (took 0.0166014 sec) SUBFIND: SO iteration 13: need to repeat for 1203522 halo centers. (took 0.0166728 sec) SUBFIND: SO iteration 14: need to repeat for 1203522 halo centers. (took 0.0166192 sec) SUBFIND: SO iteration 15: need to repeat for 1203522 halo centers. (took 0.0165654 sec) SUBFIND: SO iteration 16: need to repeat for 43029 halo centers. (took 0.0162969 sec) SUBFIND: SO iteration 17: need to repeat for 291 halo centers. (took 0.00271253 sec) SUBFIND: SO iteration 18: need to repeat for 9 halo centers. (took 0.000256339 sec) SUBFIND: SO iteration 1: need to repeat for 1203522 halo centers. (took 0.0166572 sec) SUBFIND: SO iteration 2: need to repeat for 1203522 halo centers. (took 0.016454 sec) SUBFIND: SO iteration 3: need to repeat for 1203522 halo centers. (took 0.0165314 sec) SUBFIND: SO iteration 4: need to repeat for 1203522 halo centers. (took 0.0165909 sec) SUBFIND: SO iteration 5: need to repeat for 1203522 halo centers. (took 0.016478 sec) SUBFIND: SO iteration 6: need to repeat for 1203522 halo centers. (took 0.0165219 sec) SUBFIND: SO iteration 7: need to repeat for 1203522 halo centers. (took 0.0165155 sec) SUBFIND: SO iteration 8: need to repeat for 1203522 halo centers. (took 0.0166435 sec) SUBFIND: SO iteration 9: need to repeat for 1203522 halo centers. (took 0.0165029 sec) SUBFIND: SO iteration 10: need to repeat for 1203522 halo centers. (took 0.0165176 sec) SUBFIND: SO iteration 11: need to repeat for 1203522 halo centers. (took 0.0165809 sec) SUBFIND: SO iteration 12: need to repeat for 1203522 halo centers. (took 0.0165318 sec) SUBFIND: SO iteration 13: need to repeat for 1203522 halo centers. (took 0.0165075 sec) SUBFIND: SO iteration 14: need to repeat for 1203522 halo centers. (took 0.0165804 sec) SUBFIND: SO iteration 15: need to repeat for 1203522 halo centers. (took 0.0165194 sec) SUBFIND: SO iteration 16: need to repeat for 23012 halo centers. (took 0.0162759 sec) SUBFIND: SO iteration 17: need to repeat for 134 halo centers. (took 0.0017069 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000239911 sec) SUBFIND: SO iteration 1: need to repeat for 1203522 halo centers. (took 0.0165659 sec) SUBFIND: SO iteration 2: need to repeat for 1203522 halo centers. (took 0.0166608 sec) SUBFIND: SO iteration 3: need to repeat for 1203522 halo centers. (took 0.0167734 sec) SUBFIND: SO iteration 4: need to repeat for 1203522 halo centers. (took 0.0166049 sec) SUBFIND: SO iteration 5: need to repeat for 1203522 halo centers. (took 0.0167407 sec) SUBFIND: SO iteration 6: need to repeat for 1203522 halo centers. (took 0.0168883 sec) SUBFIND: SO iteration 7: need to repeat for 1203522 halo centers. (took 0.0168833 sec) SUBFIND: SO iteration 8: need to repeat for 1203522 halo centers. (took 0.0168839 sec) SUBFIND: SO iteration 9: need to repeat for 1203522 halo centers. (took 0.0170528 sec) SUBFIND: SO iteration 10: need to repeat for 1203522 halo centers. (took 0.0171288 sec) SUBFIND: SO iteration 11: need to repeat for 1203522 halo centers. (took 0.0169247 sec) SUBFIND: SO iteration 12: need to repeat for 1203522 halo centers. (took 0.0174678 sec) SUBFIND: SO iteration 13: need to repeat for 1203522 halo centers. (took 0.0175589 sec) SUBFIND: SO iteration 14: need to repeat for 1203522 halo centers. (took 0.0180971 sec) SUBFIND: SO iteration 15: need to repeat for 1203522 halo centers. (took 0.0180957 sec) SUBFIND: SO iteration 16: need to repeat for 43824 halo centers. (took 0.0178237 sec) SUBFIND: SO iteration 17: need to repeat for 303 halo centers. (took 0.00354668 sec) SUBFIND: SO iteration 18: need to repeat for 10 halo centers. (took 0.000254679 sec) SUBFIND: SO iteration 1: need to repeat for 1203522 halo centers. (took 0.0178295 sec) SUBFIND: SO iteration 2: need to repeat for 1203522 halo centers. (took 0.0178568 sec) SUBFIND: SO iteration 3: need to repeat for 1203522 halo centers. (took 0.0176595 sec) SUBFIND: SO iteration 4: need to repeat for 1203522 halo centers. (took 0.0173286 sec) SUBFIND: SO iteration 5: need to repeat for 1203522 halo centers. (took 0.0171876 sec) SUBFIND: SO iteration 6: need to repeat for 1203522 halo centers. (took 0.0168567 sec) SUBFIND: SO iteration 7: need to repeat for 1203522 halo centers. (took 0.016764 sec) SUBFIND: SO iteration 8: need to repeat for 1203522 halo centers. (took 0.016655 sec) SUBFIND: SO iteration 9: need to repeat for 1203522 halo centers. (took 0.0166504 sec) SUBFIND: SO iteration 10: need to repeat for 1203522 halo centers. (took 0.0168651 sec) SUBFIND: SO iteration 11: need to repeat for 1203522 halo centers. (took 0.0165981 sec) SUBFIND: SO iteration 12: need to repeat for 1203522 halo centers. (took 0.0166757 sec) SUBFIND: SO iteration 13: need to repeat for 1203522 halo centers. (took 0.0166686 sec) SUBFIND: SO iteration 14: need to repeat for 1203522 halo centers. (took 0.016591 sec) SUBFIND: SO iteration 15: need to repeat for 1203522 halo centers. (took 0.0166548 sec) SUBFIND: SO iteration 16: need to repeat for 780655 halo centers. (took 0.0165862 sec) SUBFIND: SO iteration 17: need to repeat for 44431 halo centers. (took 0.0135561 sec) SUBFIND: SO iteration 18: need to repeat for 2366 halo centers. (took 0.00273025 sec) SUBFIND: SO iteration 19: need to repeat for 2 halo centers. (took 0.000364661 sec) SUBFIND: determining spherical overdensity masses took 1.11012 sec SUBFIND: assembled and ordered groups and subhalos (took 0.252548 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_086' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.62989 sec, total size 453.522 MB, corresponds to effective I/O rate of 80.5562 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.63102 sec SUBFIND: Finished with SUBFIND. (total time=32.0442 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1220985 SUBFIND: Largest subhalo has 112 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 133828975 FOF: preparing output order of particles took 0.918521 sec SNAPSHOT: writing snapshot file #86 @ time 0.111111 ... SNAPSHOT: writing snapshot file: 'output/snap_086' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_086.hdf5' to 'output/bak-snap_086.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.62127 sec, total size 5341.1 MB, corresponds to effective I/O rate of 619.525 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 302 (rank 302 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 289 (rank 289 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 293 (rank 293 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 555 (rank 555 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.