TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186305.59 Mb (on task= 351), Smallest = 186185.70 Mb (on task= 0), Average = 186276.23 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5201.06 Mb (on task= 0), Smallest = 5081.30 Mb (on task= 351), Average = 5110.66 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5201.06 Mb (on task= 0), Smallest = 5081.30 Mb (on task= 351), Average = 5110.66 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 92), Smallest = 95257.12 Mb (on task= 16), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.2962 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 63412446 (tot= 63412446) masstab= 0 READIC: Type 1: 70722657 (tot= 70722657) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 283 (tot= 283) masstab= 0 READIC: Type 5: 1 (tot= 1) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.72554 sec, total size 6382.13 MB, corresponds to effective I/O rate of 1350.56 MB/sec READIC: Total number of particles : 134135387 INIT: Testing ID uniqueness... INIT: success. took=0.0610596 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32369, determination of top-level tree involved 6 iterations and took 0.383657 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=175 for nextra=125, reaching maximum imbalance of 1.11203|1.11203 DOMAIN: combining multiple-domains took 0.0150421 sec DOMAIN: exchange of 70722941 particles DOMAIN: particle exchange done. (took 0.202498 sec) DOMAIN: domain decomposition done. (took in total 0.607034 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0326135 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=86.5298 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0523029 sec =80948.8 NTopnodes=36993 NTopleaves=32369 FOF: Start linking particles (presently allocated=98.2571 MB) FOF: linking of small cells took 0.000830492 sec FOF: local links done (took 0.0675159 sec, avg-work=0.0592101, imbalance=1.12296). FOF: Marked=165325 out of the 70722657 primaries which are linked FOF: begin linking across processors (presently allocated=99.3079 MB) FOF: have done 19122 cross links (processed 165325, took 0.00387684 sec) FOF: have done 3570 cross links (processed 84904, took 0.00321342 sec) FOF: have done 557 cross links (processed 11628, took 0.00261648 sec) FOF: have done 90 cross links (processed 1826, took 0.00239407 sec) FOF: have done 13 cross links (processed 257, took 0.00239916 sec) FOF: have done 4 cross links (processed 44, took 0.00228988 sec) FOF: have done 0 cross links (processed 9, took 0.00231954 sec) FOF: Local groups found. FOF: primary group finding took = 0.092073 sec FOF: Start finding nearest dm-particle (presently allocated=98.2571 MB) FOF: fof-nearest iteration 1: need to repeat for 62391221 particles. (took = 0.0458828 sec) FOF: fof-nearest iteration 2: need to repeat for 57141726 particles. (took = 0.0493455 sec) FOF: fof-nearest iteration 3: need to repeat for 41037663 particles. (took = 0.0527726 sec) FOF: fof-nearest iteration 4: need to repeat for 18751653 particles. (took = 0.0451063 sec) FOF: fof-nearest iteration 5: need to repeat for 3758658 particles. (took = 0.0253749 sec) FOF: fof-nearest iteration 6: need to repeat for 71974 particles. (took = 0.00817888 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.230887 sec FOF: compiling local group data and catalogue took = 0.0136816 sec FOF: Total number of FOF groups with at least 32 particles: 3533440 FOF: Largest FOF group has 76 particles. FOF: Total number of particles in FOF groups: 134134818 FOF: group properties are now allocated.. (presently allocated=90.4153 MB) FOF: computation of group properties took = 0.00836098 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.247945 sec FOF: Finished computing FoF groups. Complete work took 0.776919 sec (presently allocated=87.9841 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=93.1395 MB) GRAVTREE: Tree construction done. took 0.277133 sec =98707.6 NTopnodes=36993 NTopleaves=32369 tree-build-scalability=0.62566 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 129328679 particles. (took 0.432417 sec) SUBFIND: ngb iteration 2: need to repeat for 123037354 particles. (took 0.361781 sec) SUBFIND: ngb iteration 3: need to repeat for 116420230 particles. (took 0.317353 sec) SUBFIND: ngb iteration 4: need to repeat for 110216862 particles. (took 0.281247 sec) SUBFIND: ngb iteration 5: need to repeat for 104385896 particles. (took 0.257917 sec) SUBFIND: ngb iteration 6: need to repeat for 97821871 particles. (took 0.242618 sec) SUBFIND: ngb iteration 7: need to repeat for 88794384 particles. (took 0.224866 sec) SUBFIND: ngb iteration 8: need to repeat for 78130824 particles. (took 0.194444 sec) SUBFIND: ngb iteration 9: need to repeat for 69887717 particles. (took 0.154117 sec) SUBFIND: ngb iteration 10: need to repeat for 65646006 particles. (took 0.1201 sec) SUBFIND: ngb iteration 11: need to repeat for 64045555 particles. (took 0.103994 sec) SUBFIND: ngb iteration 12: need to repeat for 63566005 particles. (took 0.0990588 sec) SUBFIND: ngb iteration 13: need to repeat for 63447415 particles. (took 0.0985315 sec) SUBFIND: ngb iteration 14: need to repeat for 63419892 particles. (took 0.0981919 sec) SUBFIND: ngb iteration 15: need to repeat for 63413773 particles. (took 0.0954103 sec) SUBFIND: ngb iteration 16: need to repeat for 63412501 particles. (took 0.0908803 sec) SUBFIND: ngb iteration 17: need to repeat for 63412130 particles. (took 0.0849885 sec) SUBFIND: ngb iteration 18: need to repeat for 63411577 particles. (took 0.079293 sec) SUBFIND: ngb iteration 19: need to repeat for 63410247 particles. (took 0.0754274 sec) SUBFIND: ngb iteration 20: need to repeat for 63407296 particles. (took 0.0741216 sec) SUBFIND: ngb iteration 21: need to repeat for 63400481 particles. (took 0.0746022 sec) SUBFIND: ngb iteration 22: need to repeat for 63384932 particles. (took 0.0765036 sec) SUBFIND: ngb iteration 23: need to repeat for 63348627 particles. (took 0.0789218 sec) SUBFIND: ngb iteration 24: need to repeat for 63270252 particles. (took 0.082321 sec) SUBFIND: ngb iteration 25: need to repeat for 63099868 particles. (took 0.086769 sec) SUBFIND: ngb iteration 26: need to repeat for 62740926 particles. (took 0.092986 sec) SUBFIND: ngb iteration 27: need to repeat for 62010219 particles. (took 0.101779 sec) SUBFIND: ngb iteration 28: need to repeat for 60645207 particles. (took 0.113718 sec) SUBFIND: ngb iteration 29: need to repeat for 58345141 particles. (took 0.129212 sec) SUBFIND: ngb iteration 30: need to repeat for 54883496 particles. (took 0.149526 sec) SUBFIND: ngb iteration 31: need to repeat for 50315813 particles. (took 0.169169 sec) SUBFIND: ngb iteration 32: need to repeat for 45027536 particles. (took 0.18618 sec) SUBFIND: ngb iteration 33: need to repeat for 39439882 particles. (took 0.19503 sec) SUBFIND: ngb iteration 34: need to repeat for 33719443 particles. (took 0.188551 sec) SUBFIND: ngb iteration 35: need to repeat for 27779621 particles. (took 0.168321 sec) SUBFIND: ngb iteration 36: need to repeat for 21665372 particles. (took 0.141915 sec) SUBFIND: ngb iteration 37: need to repeat for 15709703 particles. (took 0.115159 sec) SUBFIND: ngb iteration 38: need to repeat for 10360664 particles. (took 0.0886831 sec) SUBFIND: ngb iteration 39: need to repeat for 6051026 particles. (took 0.0638811 sec) SUBFIND: ngb iteration 40: need to repeat for 3042769 particles. (took 0.0423225 sec) SUBFIND: ngb iteration 41: need to repeat for 1267951 particles. (took 0.0247948 sec) SUBFIND: ngb iteration 42: need to repeat for 425518 particles. (took 0.0135791 sec) SUBFIND: ngb iteration 43: need to repeat for 110001 particles. (took 0.00689929 sec) SUBFIND: ngb iteration 44: need to repeat for 20404 particles. (took 0.00288162 sec) SUBFIND: ngb iteration 45: need to repeat for 2703 particles. (took 0.00111816 sec) SUBFIND: ngb iteration 46: need to repeat for 286 particles. (took 0.000398891 sec) SUBFIND: ngb iteration 47: need to repeat for 32 particles. (took 0.000335144 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 5.88636 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135387 particles, for threshold size factor 0.6) SUBFIND: The other 3533440 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00581294 sec SUBFIND: particle balance=1.11203 SUBFIND: subfind_exchange() took 0.23384 sec SUBFIND: particle balance for processing=1.00033 SUBFIND: subdomain decomposition took 0.0517639 sec SUBFIND: serial subfind subdomain decomposition took 0.0512761 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=4090 took 40.6062 sec SUBFIND: root-task=0: Serial processing of halo 0 took 40.7317 SUBFIND: Processing overall took (total time=45.2546 sec) SUBFIND: 0 out of 0 decisions, fraction -nan, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258753 ALLOCATE: Changing to MaxPartSph = 122325 SUBFIND: subfind_exchange() (for return to original CPU) took 0.258154 sec TREE: Full tree construction for all particles. (presently allocated=80.7357 MB) GRAVTREE: Tree construction done. took 0.819218 sec =98707.6 NTopnodes=36993 NTopleaves=32369 tree-build-scalability=0.62566 SUBFIND: SO iteration 1: need to repeat for 3533398 halo centers. (took 0.0267883 sec) SUBFIND: SO iteration 2: need to repeat for 3533398 halo centers. (took 0.0238712 sec) SUBFIND: SO iteration 3: need to repeat for 3533398 halo centers. (took 0.0239679 sec) SUBFIND: SO iteration 4: need to repeat for 3533398 halo centers. (took 0.0239088 sec) SUBFIND: SO iteration 5: need to repeat for 3533398 halo centers. (took 0.0239119 sec) SUBFIND: SO iteration 6: need to repeat for 3533398 halo centers. (took 0.023935 sec) SUBFIND: SO iteration 7: need to repeat for 3533398 halo centers. (took 0.0239696 sec) SUBFIND: SO iteration 8: need to repeat for 3533398 halo centers. (took 0.0239802 sec) SUBFIND: SO iteration 9: need to repeat for 3533398 halo centers. (took 0.0239241 sec) SUBFIND: SO iteration 10: need to repeat for 3533398 halo centers. (took 0.024285 sec) SUBFIND: SO iteration 11: need to repeat for 3533398 halo centers. (took 0.0243816 sec) SUBFIND: SO iteration 12: need to repeat for 3533398 halo centers. (took 0.0248545 sec) SUBFIND: SO iteration 13: need to repeat for 3533398 halo centers. (took 0.0245576 sec) SUBFIND: SO iteration 14: need to repeat for 3533398 halo centers. (took 0.0240981 sec) SUBFIND: SO iteration 15: need to repeat for 3533398 halo centers. (took 0.024184 sec) SUBFIND: SO iteration 16: need to repeat for 441982 halo centers. (took 0.023427 sec) SUBFIND: SO iteration 17: need to repeat for 6998 halo centers. (took 0.00958902 sec) SUBFIND: SO iteration 1: need to repeat for 3533398 halo centers. (took 0.0242746 sec) SUBFIND: SO iteration 2: need to repeat for 3533398 halo centers. (took 0.023774 sec) SUBFIND: SO iteration 3: need to repeat for 3533398 halo centers. (took 0.023935 sec) SUBFIND: SO iteration 4: need to repeat for 3533398 halo centers. (took 0.0239476 sec) SUBFIND: SO iteration 5: need to repeat for 3533398 halo centers. (took 0.0239469 sec) SUBFIND: SO iteration 6: need to repeat for 3533398 halo centers. (took 0.0239327 sec) SUBFIND: SO iteration 7: need to repeat for 3533398 halo centers. (took 0.0239412 sec) SUBFIND: SO iteration 8: need to repeat for 3533398 halo centers. (took 0.0238822 sec) SUBFIND: SO iteration 9: need to repeat for 3533398 halo centers. (took 0.0239458 sec) SUBFIND: SO iteration 10: need to repeat for 3533398 halo centers. (took 0.023934 sec) SUBFIND: SO iteration 11: need to repeat for 3533398 halo centers. (took 0.0239023 sec) SUBFIND: SO iteration 12: need to repeat for 3533398 halo centers. (took 0.0239851 sec) SUBFIND: SO iteration 13: need to repeat for 3533398 halo centers. (took 0.0239572 sec) SUBFIND: SO iteration 14: need to repeat for 3533398 halo centers. (took 0.0239386 sec) SUBFIND: SO iteration 15: need to repeat for 3533398 halo centers. (took 0.0238457 sec) SUBFIND: SO iteration 16: need to repeat for 270529 halo centers. (took 0.0233241 sec) SUBFIND: SO iteration 17: need to repeat for 4861 halo centers. (took 0.00787785 sec) SUBFIND: SO iteration 1: need to repeat for 3533398 halo centers. (took 0.024112 sec) SUBFIND: SO iteration 2: need to repeat for 3533398 halo centers. (took 0.0236434 sec) SUBFIND: SO iteration 3: need to repeat for 3533398 halo centers. (took 0.0238917 sec) SUBFIND: SO iteration 4: need to repeat for 3533398 halo centers. (took 0.0239031 sec) SUBFIND: SO iteration 5: need to repeat for 3533398 halo centers. (took 0.0239154 sec) SUBFIND: SO iteration 6: need to repeat for 3533398 halo centers. (took 0.023809 sec) SUBFIND: SO iteration 7: need to repeat for 3533398 halo centers. (took 0.023927 sec) SUBFIND: SO iteration 8: need to repeat for 3533398 halo centers. (took 0.0238967 sec) SUBFIND: SO iteration 9: need to repeat for 3533398 halo centers. (took 0.0239324 sec) SUBFIND: SO iteration 10: need to repeat for 3533398 halo centers. (took 0.0238703 sec) SUBFIND: SO iteration 11: need to repeat for 3533398 halo centers. (took 0.0239006 sec) SUBFIND: SO iteration 12: need to repeat for 3533398 halo centers. (took 0.023871 sec) SUBFIND: SO iteration 13: need to repeat for 3533398 halo centers. (took 0.0239738 sec) SUBFIND: SO iteration 14: need to repeat for 3533398 halo centers. (took 0.0239078 sec) SUBFIND: SO iteration 15: need to repeat for 3533398 halo centers. (took 0.0239553 sec) SUBFIND: SO iteration 16: need to repeat for 443275 halo centers. (took 0.0232318 sec) SUBFIND: SO iteration 17: need to repeat for 7008 halo centers. (took 0.00967006 sec) SUBFIND: SO iteration 1: need to repeat for 3533398 halo centers. (took 0.0247345 sec) SUBFIND: SO iteration 2: need to repeat for 3533398 halo centers. (took 0.0252423 sec) SUBFIND: SO iteration 3: need to repeat for 3533398 halo centers. (took 0.0247851 sec) SUBFIND: SO iteration 4: need to repeat for 3533398 halo centers. (took 0.0248807 sec) SUBFIND: SO iteration 5: need to repeat for 3533398 halo centers. (took 0.0249826 sec) SUBFIND: SO iteration 6: need to repeat for 3533398 halo centers. (took 0.0251396 sec) SUBFIND: SO iteration 7: need to repeat for 3533398 halo centers. (took 0.0242207 sec) SUBFIND: SO iteration 8: need to repeat for 3533398 halo centers. (took 0.0237656 sec) SUBFIND: SO iteration 9: need to repeat for 3533398 halo centers. (took 0.0235592 sec) SUBFIND: SO iteration 10: need to repeat for 3533398 halo centers. (took 0.0234443 sec) SUBFIND: SO iteration 11: need to repeat for 3533398 halo centers. (took 0.0233925 sec) SUBFIND: SO iteration 12: need to repeat for 3533398 halo centers. (took 0.0236882 sec) SUBFIND: SO iteration 13: need to repeat for 3533398 halo centers. (took 0.0234049 sec) SUBFIND: SO iteration 14: need to repeat for 3533398 halo centers. (took 0.0233283 sec) SUBFIND: SO iteration 15: need to repeat for 3533398 halo centers. (took 0.0233777 sec) SUBFIND: SO iteration 16: need to repeat for 3132381 halo centers. (took 0.0232775 sec) SUBFIND: SO iteration 17: need to repeat for 340799 halo centers. (took 0.0211478 sec) SUBFIND: SO iteration 18: need to repeat for 30187 halo centers. (took 0.00861709 sec) SUBFIND: determining spherical overdensity masses took 1.60294 sec SUBFIND: assembled and ordered groups and subhalos (took 0.262787 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 5.02449 sec, total size 1320.93 MB, corresponds to effective I/O rate of 262.899 MB/sec SUBFIND: Subgroup catalogues saved. took = 5.02645 sec SUBFIND: Finished with SUBFIND. (total time=59.6699 sec) SUBFIND: Total number of subhalos with at least 20 particles: 3533398 SUBFIND: Largest subhalo has 76 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134133140 FOF: preparing output order of particles took 0.920208 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 10.1185 sec, total size 5330.87 MB, corresponds to effective I/O rate of 526.846 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 565 (rank 565 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 566 (rank 566 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 579 (rank 579 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 585 (rank 585 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.