TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186304.90 Mb (on task= 783), Smallest = 186183.41 Mb (on task= 0), Average = 186278.92 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5203.35 Mb (on task= 0), Smallest = 5081.99 Mb (on task= 189), Average = 5107.97 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5203.35 Mb (on task= 0), Smallest = 5081.99 Mb (on task= 189), Average = 5107.97 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 14), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.7706 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 63876047 (tot= 63876047) masstab= 0 READIC: Type 1: 70258432 (tot= 70258432) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 949 (tot= 949) masstab= 0 READIC: Type 5: 1 (tot= 1) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.47193 sec, total size 6383.9 MB, corresponds to effective I/O rate of 1427.55 MB/sec READIC: Total number of particles : 134135429 INIT: Testing ID uniqueness... INIT: success. took=0.062827 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=31669, determination of top-level tree involved 6 iterations and took 0.385513 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=187 for nextra=157, reaching maximum imbalance of 1.12199|1.1221 DOMAIN: combining multiple-domains took 0.0153864 sec DOMAIN: exchange of 70259382 particles DOMAIN: particle exchange done. (took 0.219194 sec) DOMAIN: domain decomposition done. (took in total 0.625956 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0348868 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=86.6921 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0517038 sec =75058 NTopnodes=36193 NTopleaves=31669 FOF: Start linking particles (presently allocated=98.7383 MB) FOF: linking of small cells took 0.000933938 sec FOF: local links done (took 0.0699057 sec, avg-work=0.0610414, imbalance=1.13227). FOF: Marked=173974 out of the 70258432 primaries which are linked FOF: begin linking across processors (presently allocated=99.8159 MB) FOF: have done 17876 cross links (processed 173974, took 0.00392182 sec) FOF: have done 3568 cross links (processed 88797, took 0.00319473 sec) FOF: have done 568 cross links (processed 12575, took 0.00266519 sec) FOF: have done 80 cross links (processed 1940, took 0.00247908 sec) FOF: have done 6 cross links (processed 237, took 0.00243958 sec) FOF: have done 1 cross links (processed 15, took 0.00238735 sec) FOF: have done 0 cross links (processed 2, took 0.0023743 sec) FOF: Local groups found. FOF: primary group finding took = 0.0951155 sec FOF: Start finding nearest dm-particle (presently allocated=98.7383 MB) FOF: fof-nearest iteration 1: need to repeat for 62695038 particles. (took = 0.0469325 sec) FOF: fof-nearest iteration 2: need to repeat for 56748926 particles. (took = 0.0504998 sec) FOF: fof-nearest iteration 3: need to repeat for 39299151 particles. (took = 0.0540248 sec) FOF: fof-nearest iteration 4: need to repeat for 16644490 particles. (took = 0.0451366 sec) FOF: fof-nearest iteration 5: need to repeat for 2997393 particles. (took = 0.0242946 sec) FOF: fof-nearest iteration 6: need to repeat for 55276 particles. (took = 0.00718496 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.232473 sec FOF: compiling local group data and catalogue took = 0.0137405 sec FOF: Total number of FOF groups with at least 32 particles: 2705508 FOF: Largest FOF group has 100 particles. FOF: Total number of particles in FOF groups: 134134924 FOF: group properties are now allocated.. (presently allocated=90.4008 MB) FOF: computation of group properties took = 0.00734831 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.244531 sec FOF: Finished computing FoF groups. Complete work took 0.768552 sec (presently allocated=87.8524 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=93.0537 MB) GRAVTREE: Tree construction done. took 0.218369 sec =92191 NTopnodes=36193 NTopleaves=31669 tree-build-scalability=0.607867 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133892177 particles. (took 0.437674 sec) SUBFIND: ngb iteration 2: need to repeat for 133467462 particles. (took 0.378579 sec) SUBFIND: ngb iteration 3: need to repeat for 132737890 particles. (took 0.351538 sec) SUBFIND: ngb iteration 4: need to repeat for 131396377 particles. (took 0.33323 sec) SUBFIND: ngb iteration 5: need to repeat for 128840683 particles. (took 0.324012 sec) SUBFIND: ngb iteration 6: need to repeat for 123842061 particles. (took 0.31969 sec) SUBFIND: ngb iteration 7: need to repeat for 114398833 particles. (took 0.310055 sec) SUBFIND: ngb iteration 8: need to repeat for 99505997 particles. (took 0.286837 sec) SUBFIND: ngb iteration 9: need to repeat for 83386273 particles. (took 0.243623 sec) SUBFIND: ngb iteration 10: need to repeat for 72348392 particles. (took 0.188493 sec) SUBFIND: ngb iteration 11: need to repeat for 66968830 particles. (took 0.146398 sec) SUBFIND: ngb iteration 12: need to repeat for 64886026 particles. (took 0.125104 sec) SUBFIND: ngb iteration 13: need to repeat for 64194031 particles. (took 0.117587 sec) SUBFIND: ngb iteration 14: need to repeat for 63977656 particles. (took 0.115811 sec) SUBFIND: ngb iteration 15: need to repeat for 63909373 particles. (took 0.112163 sec) SUBFIND: ngb iteration 16: need to repeat for 63886590 particles. (took 0.106943 sec) SUBFIND: ngb iteration 17: need to repeat for 63878029 particles. (took 0.0999089 sec) SUBFIND: ngb iteration 18: need to repeat for 63873701 particles. (took 0.093052 sec) SUBFIND: ngb iteration 19: need to repeat for 63869351 particles. (took 0.0881132 sec) SUBFIND: ngb iteration 20: need to repeat for 63862629 particles. (took 0.0861067 sec) SUBFIND: ngb iteration 21: need to repeat for 63850590 particles. (took 0.0861733 sec) SUBFIND: ngb iteration 22: need to repeat for 63829317 particles. (took 0.0882292 sec) SUBFIND: ngb iteration 23: need to repeat for 63789088 particles. (took 0.0909913 sec) SUBFIND: ngb iteration 24: need to repeat for 63713869 particles. (took 0.0954164 sec) SUBFIND: ngb iteration 25: need to repeat for 63581957 particles. (took 0.100963 sec) SUBFIND: ngb iteration 26: need to repeat for 63347945 particles. (took 0.108414 sec) SUBFIND: ngb iteration 27: need to repeat for 62956241 particles. (took 0.119498 sec) SUBFIND: ngb iteration 28: need to repeat for 62323458 particles. (took 0.13466 sec) SUBFIND: ngb iteration 29: need to repeat for 61342167 particles. (took 0.154212 sec) SUBFIND: ngb iteration 30: need to repeat for 59879273 particles. (took 0.174562 sec) SUBFIND: ngb iteration 31: need to repeat for 57763326 particles. (took 0.195498 sec) SUBFIND: ngb iteration 32: need to repeat for 54831549 particles. (took 0.212085 sec) SUBFIND: ngb iteration 33: need to repeat for 50923284 particles. (took 0.219305 sec) SUBFIND: ngb iteration 34: need to repeat for 45913317 particles. (took 0.221178 sec) SUBFIND: ngb iteration 35: need to repeat for 39837690 particles. (took 0.214901 sec) SUBFIND: ngb iteration 36: need to repeat for 32885571 particles. (took 0.199078 sec) SUBFIND: ngb iteration 37: need to repeat for 25494193 particles. (took 0.175099 sec) SUBFIND: ngb iteration 38: need to repeat for 18278500 particles. (took 0.148893 sec) SUBFIND: ngb iteration 39: need to repeat for 11879756 particles. (took 0.121168 sec) SUBFIND: ngb iteration 40: need to repeat for 6838818 particles. (took 0.0922621 sec) SUBFIND: ngb iteration 41: need to repeat for 3399055 particles. (took 0.0635162 sec) SUBFIND: ngb iteration 42: need to repeat for 1414028 particles. (took 0.0388466 sec) SUBFIND: ngb iteration 43: need to repeat for 469276 particles. (took 0.0202453 sec) SUBFIND: ngb iteration 44: need to repeat for 120842 particles. (took 0.00942119 sec) SUBFIND: ngb iteration 45: need to repeat for 22234 particles. (took 0.00360155 sec) SUBFIND: ngb iteration 46: need to repeat for 2750 particles. (took 0.00121126 sec) SUBFIND: ngb iteration 47: need to repeat for 254 particles. (took 0.000476049 sec) SUBFIND: ngb iteration 48: need to repeat for 9 particles. (took 0.00029421 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 7.35924 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135429 particles, for threshold size factor 0.6) SUBFIND: The other 2705508 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00505792 sec SUBFIND: particle balance=1.12199 SUBFIND: subfind_exchange() took 0.237868 sec SUBFIND: particle balance for processing=1.00052 SUBFIND: subdomain decomposition took 0.0518294 sec SUBFIND: serial subfind subdomain decomposition took 0.0512533 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=3132 took 32.547 sec SUBFIND: root-task=0: Serial processing of halo 0 took 32.6726 SUBFIND: Processing overall took (total time=34.3401 sec) SUBFIND: 0 out of 1768 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258753 ALLOCATE: Changing to MaxPartSph = 123218 SUBFIND: subfind_exchange() (for return to original CPU) took 0.261484 sec TREE: Full tree construction for all particles. (presently allocated=81.4524 MB) GRAVTREE: Tree construction done. took 0.796829 sec =92191 NTopnodes=36193 NTopleaves=31669 tree-build-scalability=0.607867 SUBFIND: SO iteration 1: need to repeat for 2705499 halo centers. (took 0.023911 sec) SUBFIND: SO iteration 2: need to repeat for 2705499 halo centers. (took 0.0215027 sec) SUBFIND: SO iteration 3: need to repeat for 2705499 halo centers. (took 0.0215837 sec) SUBFIND: SO iteration 4: need to repeat for 2705499 halo centers. (took 0.0216277 sec) SUBFIND: SO iteration 5: need to repeat for 2705499 halo centers. (took 0.0216364 sec) SUBFIND: SO iteration 6: need to repeat for 2705499 halo centers. (took 0.0217004 sec) SUBFIND: SO iteration 7: need to repeat for 2705499 halo centers. (took 0.0216999 sec) SUBFIND: SO iteration 8: need to repeat for 2705499 halo centers. (took 0.0216862 sec) SUBFIND: SO iteration 9: need to repeat for 2705499 halo centers. (took 0.0215787 sec) SUBFIND: SO iteration 10: need to repeat for 2705499 halo centers. (took 0.0214341 sec) SUBFIND: SO iteration 11: need to repeat for 2705499 halo centers. (took 0.021532 sec) SUBFIND: SO iteration 12: need to repeat for 2705499 halo centers. (took 0.0215348 sec) SUBFIND: SO iteration 13: need to repeat for 2705499 halo centers. (took 0.021512 sec) SUBFIND: SO iteration 14: need to repeat for 2705499 halo centers. (took 0.0216135 sec) SUBFIND: SO iteration 15: need to repeat for 2705499 halo centers. (took 0.0215572 sec) SUBFIND: SO iteration 16: need to repeat for 260727 halo centers. (took 0.0211154 sec) SUBFIND: SO iteration 17: need to repeat for 1779 halo centers. (took 0.00817143 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000328686 sec) SUBFIND: SO iteration 1: need to repeat for 2705499 halo centers. (took 0.0217454 sec) SUBFIND: SO iteration 2: need to repeat for 2705499 halo centers. (took 0.0214999 sec) SUBFIND: SO iteration 3: need to repeat for 2705499 halo centers. (took 0.0218256 sec) SUBFIND: SO iteration 4: need to repeat for 2705499 halo centers. (took 0.0216421 sec) SUBFIND: SO iteration 5: need to repeat for 2705499 halo centers. (took 0.0216819 sec) SUBFIND: SO iteration 6: need to repeat for 2705499 halo centers. (took 0.0218652 sec) SUBFIND: SO iteration 7: need to repeat for 2705499 halo centers. (took 0.0217283 sec) SUBFIND: SO iteration 8: need to repeat for 2705499 halo centers. (took 0.0222906 sec) SUBFIND: SO iteration 9: need to repeat for 2705499 halo centers. (took 0.0218937 sec) SUBFIND: SO iteration 10: need to repeat for 2705499 halo centers. (took 0.0216015 sec) SUBFIND: SO iteration 11: need to repeat for 2705499 halo centers. (took 0.0217873 sec) SUBFIND: SO iteration 12: need to repeat for 2705499 halo centers. (took 0.0221991 sec) SUBFIND: SO iteration 13: need to repeat for 2705499 halo centers. (took 0.0217641 sec) SUBFIND: SO iteration 14: need to repeat for 2705499 halo centers. (took 0.0220426 sec) SUBFIND: SO iteration 15: need to repeat for 2705499 halo centers. (took 0.0218009 sec) SUBFIND: SO iteration 16: need to repeat for 149924 halo centers. (took 0.0211229 sec) SUBFIND: SO iteration 17: need to repeat for 852 halo centers. (took 0.00603333 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000276793 sec) SUBFIND: SO iteration 1: need to repeat for 2705499 halo centers. (took 0.021561 sec) SUBFIND: SO iteration 2: need to repeat for 2705499 halo centers. (took 0.0213048 sec) SUBFIND: SO iteration 3: need to repeat for 2705499 halo centers. (took 0.0214441 sec) SUBFIND: SO iteration 4: need to repeat for 2705499 halo centers. (took 0.0214665 sec) SUBFIND: SO iteration 5: need to repeat for 2705499 halo centers. (took 0.0215471 sec) SUBFIND: SO iteration 6: need to repeat for 2705499 halo centers. (took 0.0216963 sec) SUBFIND: SO iteration 7: need to repeat for 2705499 halo centers. (took 0.0216017 sec) SUBFIND: SO iteration 8: need to repeat for 2705499 halo centers. (took 0.0214408 sec) SUBFIND: SO iteration 9: need to repeat for 2705499 halo centers. (took 0.0216223 sec) SUBFIND: SO iteration 10: need to repeat for 2705499 halo centers. (took 0.0215292 sec) SUBFIND: SO iteration 11: need to repeat for 2705499 halo centers. (took 0.0214385 sec) SUBFIND: SO iteration 12: need to repeat for 2705499 halo centers. (took 0.0215164 sec) SUBFIND: SO iteration 13: need to repeat for 2705499 halo centers. (took 0.0213733 sec) SUBFIND: SO iteration 14: need to repeat for 2705499 halo centers. (took 0.0214521 sec) SUBFIND: SO iteration 15: need to repeat for 2705499 halo centers. (took 0.0213674 sec) SUBFIND: SO iteration 16: need to repeat for 262301 halo centers. (took 0.0209116 sec) SUBFIND: SO iteration 17: need to repeat for 1780 halo centers. (took 0.00812358 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000361402 sec) SUBFIND: SO iteration 1: need to repeat for 2705499 halo centers. (took 0.0214674 sec) SUBFIND: SO iteration 2: need to repeat for 2705499 halo centers. (took 0.0213547 sec) SUBFIND: SO iteration 3: need to repeat for 2705499 halo centers. (took 0.0207783 sec) SUBFIND: SO iteration 4: need to repeat for 2705499 halo centers. (took 0.0212728 sec) SUBFIND: SO iteration 5: need to repeat for 2705499 halo centers. (took 0.0212241 sec) SUBFIND: SO iteration 6: need to repeat for 2705499 halo centers. (took 0.0212043 sec) SUBFIND: SO iteration 7: need to repeat for 2705499 halo centers. (took 0.0212484 sec) SUBFIND: SO iteration 8: need to repeat for 2705499 halo centers. (took 0.0211417 sec) SUBFIND: SO iteration 9: need to repeat for 2705499 halo centers. (took 0.0211999 sec) SUBFIND: SO iteration 10: need to repeat for 2705499 halo centers. (took 0.0210203 sec) SUBFIND: SO iteration 11: need to repeat for 2705499 halo centers. (took 0.0210551 sec) SUBFIND: SO iteration 12: need to repeat for 2705499 halo centers. (took 0.0211989 sec) SUBFIND: SO iteration 13: need to repeat for 2705499 halo centers. (took 0.0213305 sec) SUBFIND: SO iteration 14: need to repeat for 2705499 halo centers. (took 0.0212002 sec) SUBFIND: SO iteration 15: need to repeat for 2705499 halo centers. (took 0.0213387 sec) SUBFIND: SO iteration 16: need to repeat for 2302197 halo centers. (took 0.0210403 sec) SUBFIND: SO iteration 17: need to repeat for 150088 halo centers. (took 0.0189403 sec) SUBFIND: SO iteration 18: need to repeat for 17213 halo centers. (took 0.00618433 sec) SUBFIND: determining spherical overdensity masses took 1.43246 sec SUBFIND: assembled and ordered groups and subhalos (took 0.32178 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.91816 sec, total size 1011.79 MB, corresponds to effective I/O rate of 205.725 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.91954 sec SUBFIND: Finished with SUBFIND. (total time=49.9369 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2707266 SUBFIND: Largest subhalo has 100 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134134439 FOF: preparing output order of particles took 0.938103 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 10.1324 sec, total size 5336.18 MB, corresponds to effective I/O rate of 526.646 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 710 (rank 710 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 724 (rank 724 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.