TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186318.07 Mb (on task= 837), Smallest = 186183.72 Mb (on task= 0), Average = 186280.42 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5203.04 Mb (on task= 0), Smallest = 5068.82 Mb (on task= 837), Average = 5106.46 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5203.04 Mb (on task= 0), Smallest = 5068.82 Mb (on task= 837), Average = 5106.46 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 6), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.455 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 64156365 (tot= 64156365) masstab= 0 READIC: Type 1: 69977232 (tot= 69977232) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 1766 (tot= 1766) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.67495 sec, total size 6384.97 MB, corresponds to effective I/O rate of 1365.78 MB/sec READIC: Total number of particles : 134135363 INIT: Testing ID uniqueness... INIT: success. took=0.0572594 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: NTopleaves=30913, determination of top-level tree involved 6 iterations and took 0.362429 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=187 for nextra=157, reaching maximum imbalance of 1.12198|1.1221 DOMAIN: combining multiple-domains took 0.0151955 sec DOMAIN: exchange of 69978998 particles DOMAIN: particle exchange done. (took 0.218684 sec) DOMAIN: domain decomposition done. (took in total 0.602092 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0347548 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=86.785 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0513513 sec =72322.4 NTopnodes=35329 NTopleaves=30913 FOF: Start linking particles (presently allocated=98.8033 MB) FOF: linking of small cells took 0.00105504 sec FOF: local links done (took 0.0703176 sec, avg-work=0.0617276, imbalance=1.13193). FOF: Marked=175486 out of the 69977232 primaries which are linked FOF: begin linking across processors (presently allocated=99.8675 MB) FOF: have done 17046 cross links (processed 175486, took 0.00386142 sec) FOF: have done 3452 cross links (processed 89753, took 0.00310533 sec) FOF: have done 554 cross links (processed 12468, took 0.00267811 sec) FOF: have done 85 cross links (processed 2017, took 0.00246201 sec) FOF: have done 13 cross links (processed 279, took 0.00239716 sec) FOF: have done 3 cross links (processed 46, took 0.00237088 sec) FOF: have done 0 cross links (processed 9, took 0.00238004 sec) FOF: Local groups found. FOF: primary group finding took = 0.0954443 sec FOF: Start finding nearest dm-particle (presently allocated=98.8033 MB) FOF: fof-nearest iteration 1: need to repeat for 62897972 particles. (took = 0.0468723 sec) FOF: fof-nearest iteration 2: need to repeat for 56584602 particles. (took = 0.0508771 sec) FOF: fof-nearest iteration 3: need to repeat for 38428322 particles. (took = 0.0544824 sec) FOF: fof-nearest iteration 4: need to repeat for 15673200 particles. (took = 0.0448687 sec) FOF: fof-nearest iteration 5: need to repeat for 2715436 particles. (took = 0.0232473 sec) FOF: fof-nearest iteration 6: need to repeat for 49567 particles. (took = 0.00668466 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.231391 sec FOF: compiling local group data and catalogue took = 0.0135625 sec FOF: Total number of FOF groups with at least 32 particles: 2415610 FOF: Largest FOF group has 111 particles. FOF: Total number of particles in FOF groups: 134135186 FOF: group properties are now allocated.. (presently allocated=90.3461 MB) FOF: computation of group properties took = 0.00692972 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.231247 sec FOF: Finished computing FoF groups. Complete work took 0.75128 sec (presently allocated=87.8158 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=93.017 MB) GRAVTREE: Tree construction done. took 0.220518 sec =89236.2 NTopnodes=35329 NTopleaves=30913 tree-build-scalability=0.604554 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 131330328 particles. (took 0.43324 sec) SUBFIND: ngb iteration 2: need to repeat for 128171081 particles. (took 0.365245 sec) SUBFIND: ngb iteration 3: need to repeat for 124911818 particles. (took 0.339348 sec) SUBFIND: ngb iteration 4: need to repeat for 121609218 particles. (took 0.312989 sec) SUBFIND: ngb iteration 5: need to repeat for 117709785 particles. (took 0.296389 sec) SUBFIND: ngb iteration 6: need to repeat for 111882709 particles. (took 0.288542 sec) SUBFIND: ngb iteration 7: need to repeat for 102240993 particles. (took 0.27333 sec) SUBFIND: ngb iteration 8: need to repeat for 89125155 particles. (took 0.24624 sec) SUBFIND: ngb iteration 9: need to repeat for 77119676 particles. (took 0.203221 sec) SUBFIND: ngb iteration 10: need to repeat for 69684974 particles. (took 0.160758 sec) SUBFIND: ngb iteration 11: need to repeat for 66205775 particles. (took 0.1354 sec) SUBFIND: ngb iteration 12: need to repeat for 64854102 particles. (took 0.12503 sec) SUBFIND: ngb iteration 13: need to repeat for 64391771 particles. (took 0.123172 sec) SUBFIND: ngb iteration 14: need to repeat for 64237877 particles. (took 0.121786 sec) SUBFIND: ngb iteration 15: need to repeat for 64184877 particles. (took 0.118546 sec) SUBFIND: ngb iteration 16: need to repeat for 64163716 particles. (took 0.112675 sec) SUBFIND: ngb iteration 17: need to repeat for 64146589 particles. (took 0.105404 sec) SUBFIND: ngb iteration 18: need to repeat for 64119790 particles. (took 0.0982788 sec) SUBFIND: ngb iteration 19: need to repeat for 64078489 particles. (took 0.0929214 sec) SUBFIND: ngb iteration 20: need to repeat for 64019553 particles. (took 0.0899832 sec) SUBFIND: ngb iteration 21: need to repeat for 63938377 particles. (took 0.0901349 sec) SUBFIND: ngb iteration 22: need to repeat for 63816582 particles. (took 0.0914034 sec) SUBFIND: ngb iteration 23: need to repeat for 63636748 particles. (took 0.0939429 sec) SUBFIND: ngb iteration 24: need to repeat for 63366712 particles. (took 0.0967478 sec) SUBFIND: ngb iteration 25: need to repeat for 62946351 particles. (took 0.100576 sec) SUBFIND: ngb iteration 26: need to repeat for 62313314 particles. (took 0.107303 sec) SUBFIND: ngb iteration 27: need to repeat for 61372898 particles. (took 0.115224 sec) SUBFIND: ngb iteration 28: need to repeat for 60020281 particles. (took 0.127195 sec) SUBFIND: ngb iteration 29: need to repeat for 58143379 particles. (took 0.143467 sec) SUBFIND: ngb iteration 30: need to repeat for 55671123 particles. (took 0.16278 sec) SUBFIND: ngb iteration 31: need to repeat for 52574032 particles. (took 0.180613 sec) SUBFIND: ngb iteration 32: need to repeat for 48849902 particles. (took 0.194276 sec) SUBFIND: ngb iteration 33: need to repeat for 44493114 particles. (took 0.20246 sec) SUBFIND: ngb iteration 34: need to repeat for 39457637 particles. (took 0.201542 sec) SUBFIND: ngb iteration 35: need to repeat for 33708143 particles. (took 0.1926 sec) SUBFIND: ngb iteration 36: need to repeat for 27399401 particles. (took 0.178699 sec) SUBFIND: ngb iteration 37: need to repeat for 20877958 particles. (took 0.154918 sec) SUBFIND: ngb iteration 38: need to repeat for 14671765 particles. (took 0.130816 sec) SUBFIND: ngb iteration 39: need to repeat for 9321119 particles. (took 0.104605 sec) SUBFIND: ngb iteration 40: need to repeat for 5233161 particles. (took 0.0783181 sec) SUBFIND: ngb iteration 41: need to repeat for 2529849 particles. (took 0.053472 sec) SUBFIND: ngb iteration 42: need to repeat for 1023625 particles. (took 0.0327119 sec) SUBFIND: ngb iteration 43: need to repeat for 332515 particles. (took 0.0177677 sec) SUBFIND: ngb iteration 44: need to repeat for 84111 particles. (took 0.00779505 sec) SUBFIND: ngb iteration 45: need to repeat for 14965 particles. (took 0.00317929 sec) SUBFIND: ngb iteration 46: need to repeat for 1866 particles. (took 0.00114142 sec) SUBFIND: ngb iteration 47: need to repeat for 196 particles. (took 0.0004791 sec) SUBFIND: ngb iteration 48: need to repeat for 22 particles. (took 0.000295227 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.91132 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135363 particles, for threshold size factor 0.6) SUBFIND: The other 2415610 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00459578 sec SUBFIND: particle balance=1.12198 SUBFIND: subfind_exchange() took 0.236817 sec SUBFIND: particle balance for processing=1.00041 SUBFIND: subdomain decomposition took 0.051563 sec SUBFIND: serial subfind subdomain decomposition took 0.0513158 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2796 took 28.1482 sec SUBFIND: root-task=0: Serial processing of halo 0 took 28.273 SUBFIND: Processing overall took (total time=31.1576 sec) SUBFIND: 0 out of 3609 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258753 ALLOCATE: Changing to MaxPartSph = 123760 SUBFIND: subfind_exchange() (for return to original CPU) took 0.260957 sec TREE: Full tree construction for all particles. (presently allocated=81.3345 MB) GRAVTREE: Tree construction done. took 0.804728 sec =89236.2 NTopnodes=35329 NTopleaves=30913 tree-build-scalability=0.604554 SUBFIND: SO iteration 1: need to repeat for 2415603 halo centers. (took 0.024583 sec) SUBFIND: SO iteration 2: need to repeat for 2415603 halo centers. (took 0.0221682 sec) SUBFIND: SO iteration 3: need to repeat for 2415603 halo centers. (took 0.0221386 sec) SUBFIND: SO iteration 4: need to repeat for 2415603 halo centers. (took 0.0214169 sec) SUBFIND: SO iteration 5: need to repeat for 2415603 halo centers. (took 0.0218142 sec) SUBFIND: SO iteration 6: need to repeat for 2415603 halo centers. (took 0.021319 sec) SUBFIND: SO iteration 7: need to repeat for 2415603 halo centers. (took 0.0207589 sec) SUBFIND: SO iteration 8: need to repeat for 2415603 halo centers. (took 0.0204386 sec) SUBFIND: SO iteration 9: need to repeat for 2415603 halo centers. (took 0.0206767 sec) SUBFIND: SO iteration 10: need to repeat for 2415603 halo centers. (took 0.0207247 sec) SUBFIND: SO iteration 11: need to repeat for 2415603 halo centers. (took 0.0203844 sec) SUBFIND: SO iteration 12: need to repeat for 2415603 halo centers. (took 0.0203402 sec) SUBFIND: SO iteration 13: need to repeat for 2415603 halo centers. (took 0.02037 sec) SUBFIND: SO iteration 14: need to repeat for 2415603 halo centers. (took 0.0203555 sec) SUBFIND: SO iteration 15: need to repeat for 2415603 halo centers. (took 0.020384 sec) SUBFIND: SO iteration 16: need to repeat for 203272 halo centers. (took 0.019941 sec) SUBFIND: SO iteration 17: need to repeat for 845 halo centers. (took 0.00712032 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000271624 sec) SUBFIND: SO iteration 1: need to repeat for 2415603 halo centers. (took 0.0204387 sec) SUBFIND: SO iteration 2: need to repeat for 2415603 halo centers. (took 0.0201409 sec) SUBFIND: SO iteration 3: need to repeat for 2415603 halo centers. (took 0.0204257 sec) SUBFIND: SO iteration 4: need to repeat for 2415603 halo centers. (took 0.0205019 sec) SUBFIND: SO iteration 5: need to repeat for 2415603 halo centers. (took 0.0204239 sec) SUBFIND: SO iteration 6: need to repeat for 2415603 halo centers. (took 0.0203065 sec) SUBFIND: SO iteration 7: need to repeat for 2415603 halo centers. (took 0.0203931 sec) SUBFIND: SO iteration 8: need to repeat for 2415603 halo centers. (took 0.0203997 sec) SUBFIND: SO iteration 9: need to repeat for 2415603 halo centers. (took 0.020379 sec) SUBFIND: SO iteration 10: need to repeat for 2415603 halo centers. (took 0.0203956 sec) SUBFIND: SO iteration 11: need to repeat for 2415603 halo centers. (took 0.020369 sec) SUBFIND: SO iteration 12: need to repeat for 2415603 halo centers. (took 0.0204001 sec) SUBFIND: SO iteration 13: need to repeat for 2415603 halo centers. (took 0.0203853 sec) SUBFIND: SO iteration 14: need to repeat for 2415603 halo centers. (took 0.0204353 sec) SUBFIND: SO iteration 15: need to repeat for 2415603 halo centers. (took 0.0203868 sec) SUBFIND: SO iteration 16: need to repeat for 118249 halo centers. (took 0.0199071 sec) SUBFIND: SO iteration 17: need to repeat for 514 halo centers. (took 0.00529673 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000270601 sec) SUBFIND: SO iteration 1: need to repeat for 2415603 halo centers. (took 0.020411 sec) SUBFIND: SO iteration 2: need to repeat for 2415603 halo centers. (took 0.0202288 sec) SUBFIND: SO iteration 3: need to repeat for 2415603 halo centers. (took 0.0204512 sec) SUBFIND: SO iteration 4: need to repeat for 2415603 halo centers. (took 0.0204079 sec) SUBFIND: SO iteration 5: need to repeat for 2415603 halo centers. (took 0.0204685 sec) SUBFIND: SO iteration 6: need to repeat for 2415603 halo centers. (took 0.0203206 sec) SUBFIND: SO iteration 7: need to repeat for 2415603 halo centers. (took 0.0203658 sec) SUBFIND: SO iteration 8: need to repeat for 2415603 halo centers. (took 0.0203406 sec) SUBFIND: SO iteration 9: need to repeat for 2415603 halo centers. (took 0.0203445 sec) SUBFIND: SO iteration 10: need to repeat for 2415603 halo centers. (took 0.0203867 sec) SUBFIND: SO iteration 11: need to repeat for 2415603 halo centers. (took 0.0203685 sec) SUBFIND: SO iteration 12: need to repeat for 2415603 halo centers. (took 0.0204294 sec) SUBFIND: SO iteration 13: need to repeat for 2415603 halo centers. (took 0.0206121 sec) SUBFIND: SO iteration 14: need to repeat for 2415603 halo centers. (took 0.0204223 sec) SUBFIND: SO iteration 15: need to repeat for 2415603 halo centers. (took 0.0207899 sec) SUBFIND: SO iteration 16: need to repeat for 206616 halo centers. (took 0.0200985 sec) SUBFIND: SO iteration 17: need to repeat for 853 halo centers. (took 0.00714363 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000276141 sec) SUBFIND: SO iteration 1: need to repeat for 2415603 halo centers. (took 0.020513 sec) SUBFIND: SO iteration 2: need to repeat for 2415603 halo centers. (took 0.0204393 sec) SUBFIND: SO iteration 3: need to repeat for 2415603 halo centers. (took 0.0203526 sec) SUBFIND: SO iteration 4: need to repeat for 2415603 halo centers. (took 0.0201166 sec) SUBFIND: SO iteration 5: need to repeat for 2415603 halo centers. (took 0.0202073 sec) SUBFIND: SO iteration 6: need to repeat for 2415603 halo centers. (took 0.0200729 sec) SUBFIND: SO iteration 7: need to repeat for 2415603 halo centers. (took 0.0200921 sec) SUBFIND: SO iteration 8: need to repeat for 2415603 halo centers. (took 0.0200594 sec) SUBFIND: SO iteration 9: need to repeat for 2415603 halo centers. (took 0.0200681 sec) SUBFIND: SO iteration 10: need to repeat for 2415603 halo centers. (took 0.0200052 sec) SUBFIND: SO iteration 11: need to repeat for 2415603 halo centers. (took 0.0199756 sec) SUBFIND: SO iteration 12: need to repeat for 2415603 halo centers. (took 0.0200789 sec) SUBFIND: SO iteration 13: need to repeat for 2415603 halo centers. (took 0.0201018 sec) SUBFIND: SO iteration 14: need to repeat for 2415603 halo centers. (took 0.0200551 sec) SUBFIND: SO iteration 15: need to repeat for 2415603 halo centers. (took 0.0200867 sec) SUBFIND: SO iteration 16: need to repeat for 2005263 halo centers. (took 0.020009 sec) SUBFIND: SO iteration 17: need to repeat for 179780 halo centers. (took 0.0178167 sec) SUBFIND: SO iteration 18: need to repeat for 17570 halo centers. (took 0.00649041 sec) SUBFIND: determining spherical overdensity masses took 1.36243 sec SUBFIND: assembled and ordered groups and subhalos (took 0.26327 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.88886 sec, total size 903.793 MB, corresponds to effective I/O rate of 184.868 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.89014 sec SUBFIND: Finished with SUBFIND. (total time=46.156 sec) SUBFIND: Total number of subhalos with at least 20 particles: 2419204 SUBFIND: Largest subhalo has 111 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134134799 FOF: preparing output order of particles took 0.972918 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.12458 sec, total size 5339.38 MB, corresponds to effective I/O rate of 585.165 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 560 (rank 560 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 52 (rank 52 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.