TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186316.59 Mb (on task= 783), Smallest = 186177.71 Mb (on task= 0), Average = 186279.58 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5209.05 Mb (on task= 0), Smallest = 5070.31 Mb (on task= 783), Average = 5107.31 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5209.05 Mb (on task= 0), Smallest = 5070.31 Mb (on task= 783), Average = 5107.31 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 20), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 16.6403 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 64700490 (tot= 64700490) masstab= 0 READIC: Type 1: 69429640 (tot= 69429640) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 5185 (tot= 5185) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 4.80174 sec, total size 6387.04 MB, corresponds to effective I/O rate of 1330.15 MB/sec READIC: Total number of particles : 134135315 INIT: Testing ID uniqueness... INIT: success. took=0.0616794 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32558, determination of top-level tree involved 6 iterations and took 0.378366 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.11674|1.11683 DOMAIN: combining multiple-domains took 0.0151467 sec DOMAIN: exchange of 69434825 particles DOMAIN: particle exchange done. (took 0.198118 sec) DOMAIN: domain decomposition done. (took in total 0.597504 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0336131 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=87.0151 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0521264 sec =71125.9 NTopnodes=37209 NTopleaves=32558 FOF: Start linking particles (presently allocated=98.8435 MB) FOF: linking of small cells took 0.00102338 sec FOF: local links done (took 0.0723436 sec, avg-work=0.062966, imbalance=1.12992). FOF: Marked=170780 out of the 69429640 primaries which are linked FOF: begin linking across processors (presently allocated=99.8687 MB) FOF: have done 15526 cross links (processed 170780, took 0.00380682 sec) FOF: have done 3332 cross links (processed 86924, took 0.00309949 sec) FOF: have done 512 cross links (processed 12149, took 0.00265805 sec) FOF: have done 80 cross links (processed 1919, took 0.00239425 sec) FOF: have done 7 cross links (processed 249, took 0.00233534 sec) FOF: have done 1 cross links (processed 24, took 0.00233622 sec) FOF: have done 0 cross links (processed 2, took 0.00230969 sec) FOF: Local groups found. FOF: primary group finding took = 0.0970432 sec FOF: Start finding nearest dm-particle (presently allocated=98.8435 MB) FOF: fof-nearest iteration 1: need to repeat for 63279113 particles. (took = 0.0478089 sec) FOF: fof-nearest iteration 2: need to repeat for 56207157 particles. (took = 0.0520907 sec) FOF: fof-nearest iteration 3: need to repeat for 36581210 particles. (took = 0.0562001 sec) FOF: fof-nearest iteration 4: need to repeat for 13873212 particles. (took = 0.0448464 sec) FOF: fof-nearest iteration 5: need to repeat for 2274411 particles. (took = 0.0217345 sec) FOF: fof-nearest iteration 6: need to repeat for 41924 particles. (took = 0.00611204 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.232968 sec FOF: compiling local group data and catalogue took = 0.0133219 sec FOF: Total number of FOF groups with at least 32 particles: 1966682 FOF: Largest FOF group has 137 particles. FOF: Total number of particles in FOF groups: 134135192 FOF: group properties are now allocated.. (presently allocated=90.2698 MB) FOF: computation of group properties took = 0.00620992 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.234536 sec FOF: Finished computing FoF groups. Complete work took 0.757808 sec (presently allocated=87.8269 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=92.9979 MB) GRAVTREE: Tree construction done. took 0.153274 sec =87715.9 NTopnodes=37209 NTopleaves=32558 tree-build-scalability=0.576292 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 132115277 particles. (took 0.425917 sec) SUBFIND: ngb iteration 2: need to repeat for 129886985 particles. (took 0.350266 sec) SUBFIND: ngb iteration 3: need to repeat for 127547101 particles. (took 0.308485 sec) SUBFIND: ngb iteration 4: need to repeat for 125126747 particles. (took 0.283265 sec) SUBFIND: ngb iteration 5: need to repeat for 122254191 particles. (took 0.268976 sec) SUBFIND: ngb iteration 6: need to repeat for 117983477 particles. (took 0.262053 sec) SUBFIND: ngb iteration 7: need to repeat for 110762535 particles. (took 0.260268 sec) SUBFIND: ngb iteration 8: need to repeat for 99915078 particles. (took 0.248466 sec) SUBFIND: ngb iteration 9: need to repeat for 87951256 particles. (took 0.222703 sec) SUBFIND: ngb iteration 10: need to repeat for 78446447 particles. (took 0.190862 sec) SUBFIND: ngb iteration 11: need to repeat for 72376427 particles. (took 0.166853 sec) SUBFIND: ngb iteration 12: need to repeat for 68922504 particles. (took 0.153911 sec) SUBFIND: ngb iteration 13: need to repeat for 67034638 particles. (took 0.147092 sec) SUBFIND: ngb iteration 14: need to repeat for 65990627 particles. (took 0.141847 sec) SUBFIND: ngb iteration 15: need to repeat for 65382369 particles. (took 0.136116 sec) SUBFIND: ngb iteration 16: need to repeat for 64995044 particles. (took 0.127638 sec) SUBFIND: ngb iteration 17: need to repeat for 64713781 particles. (took 0.118886 sec) SUBFIND: ngb iteration 18: need to repeat for 64480621 particles. (took 0.110244 sec) SUBFIND: ngb iteration 19: need to repeat for 64265782 particles. (took 0.103479 sec) SUBFIND: ngb iteration 20: need to repeat for 64034309 particles. (took 0.0997884 sec) SUBFIND: ngb iteration 21: need to repeat for 63745494 particles. (took 0.0985926 sec) SUBFIND: ngb iteration 22: need to repeat for 63367996 particles. (took 0.099296 sec) SUBFIND: ngb iteration 23: need to repeat for 62866486 particles. (took 0.10023 sec) SUBFIND: ngb iteration 24: need to repeat for 62173366 particles. (took 0.102216 sec) SUBFIND: ngb iteration 25: need to repeat for 61231327 particles. (took 0.104443 sec) SUBFIND: ngb iteration 26: need to repeat for 59946081 particles. (took 0.107812 sec) SUBFIND: ngb iteration 27: need to repeat for 58239331 particles. (took 0.112329 sec) SUBFIND: ngb iteration 28: need to repeat for 56022308 particles. (took 0.120128 sec) SUBFIND: ngb iteration 29: need to repeat for 53228600 particles. (took 0.12657 sec) SUBFIND: ngb iteration 30: need to repeat for 49849496 particles. (took 0.135237 sec) SUBFIND: ngb iteration 31: need to repeat for 45888175 particles. (took 0.141778 sec) SUBFIND: ngb iteration 32: need to repeat for 41444360 particles. (took 0.147286 sec) SUBFIND: ngb iteration 33: need to repeat for 36604480 particles. (took 0.150162 sec) SUBFIND: ngb iteration 34: need to repeat for 31423999 particles. (took 0.141537 sec) SUBFIND: ngb iteration 35: need to repeat for 26000604 particles. (took 0.128193 sec) SUBFIND: ngb iteration 36: need to repeat for 20493487 particles. (took 0.108271 sec) SUBFIND: ngb iteration 37: need to repeat for 15181149 particles. (took 0.0896399 sec) SUBFIND: ngb iteration 38: need to repeat for 10411192 particles. (took 0.0711928 sec) SUBFIND: ngb iteration 39: need to repeat for 6483954 particles. (took 0.0533256 sec) SUBFIND: ngb iteration 40: need to repeat for 3592211 particles. (took 0.0374527 sec) SUBFIND: ngb iteration 41: need to repeat for 1729416 particles. (took 0.0240656 sec) SUBFIND: ngb iteration 42: need to repeat for 702309 particles. (took 0.0141029 sec) SUBFIND: ngb iteration 43: need to repeat for 233762 particles. (took 0.00736145 sec) SUBFIND: ngb iteration 44: need to repeat for 62867 particles. (took 0.00350237 sec) SUBFIND: ngb iteration 45: need to repeat for 12918 particles. (took 0.00155722 sec) SUBFIND: ngb iteration 46: need to repeat for 1908 particles. (took 0.000786159 sec) SUBFIND: ngb iteration 47: need to repeat for 158 particles. (took 0.000372157 sec) SUBFIND: ngb iteration 48: need to repeat for 3 particles. (took 0.000272335 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 6.35866 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135315 particles, for threshold size factor 0.6) SUBFIND: The other 1966682 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0042167 sec SUBFIND: particle balance=1.11541 SUBFIND: subfind_exchange() took 0.234888 sec SUBFIND: particle balance for processing=1.00077 SUBFIND: subdomain decomposition took 0.0516149 sec SUBFIND: serial subfind subdomain decomposition took 0.0511153 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=2277 took 23.2563 sec SUBFIND: root-task=0: Serial processing of halo 0 took 23.3815 SUBFIND: Processing overall took (total time=25.5954 sec) SUBFIND: 0 out of 6077 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258751 ALLOCATE: Changing to MaxPartSph = 124808 SUBFIND: subfind_exchange() (for return to original CPU) took 0.259065 sec TREE: Full tree construction for all particles. (presently allocated=80.8383 MB) GRAVTREE: Tree construction done. took 0.82776 sec =87715.9 NTopnodes=37209 NTopleaves=32558 tree-build-scalability=0.576292 SUBFIND: SO iteration 1: need to repeat for 1966680 halo centers. (took 0.0209511 sec) SUBFIND: SO iteration 2: need to repeat for 1966680 halo centers. (took 0.0188371 sec) SUBFIND: SO iteration 3: need to repeat for 1966680 halo centers. (took 0.019076 sec) SUBFIND: SO iteration 4: need to repeat for 1966680 halo centers. (took 0.0190973 sec) SUBFIND: SO iteration 5: need to repeat for 1966680 halo centers. (took 0.0190313 sec) SUBFIND: SO iteration 6: need to repeat for 1966680 halo centers. (took 0.0188575 sec) SUBFIND: SO iteration 7: need to repeat for 1966680 halo centers. (took 0.0188965 sec) SUBFIND: SO iteration 8: need to repeat for 1966680 halo centers. (took 0.0189507 sec) SUBFIND: SO iteration 9: need to repeat for 1966680 halo centers. (took 0.0188127 sec) SUBFIND: SO iteration 10: need to repeat for 1966680 halo centers. (took 0.0188857 sec) SUBFIND: SO iteration 11: need to repeat for 1966680 halo centers. (took 0.0190075 sec) SUBFIND: SO iteration 12: need to repeat for 1966680 halo centers. (took 0.0190948 sec) SUBFIND: SO iteration 13: need to repeat for 1966680 halo centers. (took 0.01882 sec) SUBFIND: SO iteration 14: need to repeat for 1966680 halo centers. (took 0.0189761 sec) SUBFIND: SO iteration 15: need to repeat for 1966680 halo centers. (took 0.0187707 sec) SUBFIND: SO iteration 16: need to repeat for 130347 halo centers. (took 0.0183163 sec) SUBFIND: SO iteration 17: need to repeat for 303 halo centers. (took 0.00563573 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.00023883 sec) SUBFIND: SO iteration 1: need to repeat for 1966680 halo centers. (took 0.0188116 sec) SUBFIND: SO iteration 2: need to repeat for 1966680 halo centers. (took 0.0186269 sec) SUBFIND: SO iteration 3: need to repeat for 1966680 halo centers. (took 0.0188851 sec) SUBFIND: SO iteration 4: need to repeat for 1966680 halo centers. (took 0.0187579 sec) SUBFIND: SO iteration 5: need to repeat for 1966680 halo centers. (took 0.0189784 sec) SUBFIND: SO iteration 6: need to repeat for 1966680 halo centers. (took 0.01887 sec) SUBFIND: SO iteration 7: need to repeat for 1966680 halo centers. (took 0.018983 sec) SUBFIND: SO iteration 8: need to repeat for 1966680 halo centers. (took 0.0188279 sec) SUBFIND: SO iteration 9: need to repeat for 1966680 halo centers. (took 0.0187537 sec) SUBFIND: SO iteration 10: need to repeat for 1966680 halo centers. (took 0.0189009 sec) SUBFIND: SO iteration 11: need to repeat for 1966680 halo centers. (took 0.0187308 sec) SUBFIND: SO iteration 12: need to repeat for 1966680 halo centers. (took 0.018954 sec) SUBFIND: SO iteration 13: need to repeat for 1966680 halo centers. (took 0.0189319 sec) SUBFIND: SO iteration 14: need to repeat for 1966680 halo centers. (took 0.0189504 sec) SUBFIND: SO iteration 15: need to repeat for 1966680 halo centers. (took 0.0188873 sec) SUBFIND: SO iteration 16: need to repeat for 72045 halo centers. (took 0.0187603 sec) SUBFIND: SO iteration 17: need to repeat for 131 halo centers. (took 0.00396762 sec) SUBFIND: SO iteration 1: need to repeat for 1966680 halo centers. (took 0.0192281 sec) SUBFIND: SO iteration 2: need to repeat for 1966680 halo centers. (took 0.0191484 sec) SUBFIND: SO iteration 3: need to repeat for 1966680 halo centers. (took 0.0197641 sec) SUBFIND: SO iteration 4: need to repeat for 1966680 halo centers. (took 0.0192623 sec) SUBFIND: SO iteration 5: need to repeat for 1966680 halo centers. (took 0.0191478 sec) SUBFIND: SO iteration 6: need to repeat for 1966680 halo centers. (took 0.0190464 sec) SUBFIND: SO iteration 7: need to repeat for 1966680 halo centers. (took 0.0188871 sec) SUBFIND: SO iteration 8: need to repeat for 1966680 halo centers. (took 0.0191212 sec) SUBFIND: SO iteration 9: need to repeat for 1966680 halo centers. (took 0.019051 sec) SUBFIND: SO iteration 10: need to repeat for 1966680 halo centers. (took 0.0190524 sec) SUBFIND: SO iteration 11: need to repeat for 1966680 halo centers. (took 0.0189729 sec) SUBFIND: SO iteration 12: need to repeat for 1966680 halo centers. (took 0.0188645 sec) SUBFIND: SO iteration 13: need to repeat for 1966680 halo centers. (took 0.0187679 sec) SUBFIND: SO iteration 14: need to repeat for 1966680 halo centers. (took 0.0188235 sec) SUBFIND: SO iteration 15: need to repeat for 1966680 halo centers. (took 0.0191446 sec) SUBFIND: SO iteration 16: need to repeat for 132253 halo centers. (took 0.0187713 sec) SUBFIND: SO iteration 17: need to repeat for 303 halo centers. (took 0.0056282 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000239374 sec) SUBFIND: SO iteration 1: need to repeat for 1966680 halo centers. (took 0.018818 sec) SUBFIND: SO iteration 2: need to repeat for 1966680 halo centers. (took 0.0186682 sec) SUBFIND: SO iteration 3: need to repeat for 1966680 halo centers. (took 0.0183777 sec) SUBFIND: SO iteration 4: need to repeat for 1966680 halo centers. (took 0.0185647 sec) SUBFIND: SO iteration 5: need to repeat for 1966680 halo centers. (took 0.0186581 sec) SUBFIND: SO iteration 6: need to repeat for 1966680 halo centers. (took 0.018817 sec) SUBFIND: SO iteration 7: need to repeat for 1966680 halo centers. (took 0.0187574 sec) SUBFIND: SO iteration 8: need to repeat for 1966680 halo centers. (took 0.0187019 sec) SUBFIND: SO iteration 9: need to repeat for 1966680 halo centers. (took 0.0188108 sec) SUBFIND: SO iteration 10: need to repeat for 1966680 halo centers. (took 0.0186935 sec) SUBFIND: SO iteration 11: need to repeat for 1966680 halo centers. (took 0.0186787 sec) SUBFIND: SO iteration 12: need to repeat for 1966680 halo centers. (took 0.0187239 sec) SUBFIND: SO iteration 13: need to repeat for 1966680 halo centers. (took 0.0187193 sec) SUBFIND: SO iteration 14: need to repeat for 1966680 halo centers. (took 0.0185007 sec) SUBFIND: SO iteration 15: need to repeat for 1966680 halo centers. (took 0.0185825 sec) SUBFIND: SO iteration 16: need to repeat for 1539421 halo centers. (took 0.0192156 sec) SUBFIND: SO iteration 17: need to repeat for 122921 halo centers. (took 0.0160461 sec) SUBFIND: SO iteration 18: need to repeat for 9626 halo centers. (took 0.00536582 sec) SUBFIND: determining spherical overdensity masses took 1.25235 sec SUBFIND: assembled and ordered groups and subhalos (took 0.259789 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.90848 sec, total size 736.472 MB, corresponds to effective I/O rate of 150.041 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.90975 sec SUBFIND: Finished with SUBFIND. (total time=39.8987 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1972735 SUBFIND: Largest subhalo has 137 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134135054 FOF: preparing output order of particles took 0.895185 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.82056 sec, total size 5345.61 MB, corresponds to effective I/O rate of 606.04 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 34 (rank 34 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 561 (rank 561 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 42 (rank 42 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 51 (rank 51 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 638 (rank 638 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 633 (rank 633 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 639 (rank 639 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.