TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186303.75 Mb (on task= 486), Smallest = 186189.66 Mb (on task= 0), Average = 186278.33 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5197.11 Mb (on task= 0), Smallest = 5083.14 Mb (on task= 486), Average = 5108.55 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5197.11 Mb (on task= 0), Smallest = 5083.14 Mb (on task= 486), Average = 5108.55 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 5), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 15.6012 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 65394631 (tot= 65394631) masstab= 0 READIC: Type 1: 68722026 (tot= 68722026) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 18662 (tot= 18662) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.00517 sec, total size 6389.69 MB, corresponds to effective I/O rate of 1276.62 MB/sec READIC: Total number of particles : 134135319 INIT: Testing ID uniqueness... INIT: success. took=0.0631977 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32159, determination of top-level tree involved 6 iterations and took 0.380139 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.11587|1.11683 DOMAIN: combining multiple-domains took 0.0160392 sec DOMAIN: exchange of 68740688 particles DOMAIN: particle exchange done. (took 0.199872 sec) DOMAIN: domain decomposition done. (took in total 0.601904 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0338502 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=87.2693 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0894882 sec =67030.3 NTopnodes=36753 NTopleaves=32159 FOF: Start linking particles (presently allocated=97.5844 MB) FOF: linking of small cells took 0.000853259 sec FOF: local links done (took 0.0737921 sec, avg-work=0.0649552, imbalance=1.12491). FOF: Marked=179778 out of the 68722026 primaries which are linked FOF: begin linking across processors (presently allocated=98.6029 MB) FOF: have done 14307 cross links (processed 179778, took 0.00385423 sec) FOF: have done 3240 cross links (processed 91398, took 0.00311208 sec) FOF: have done 524 cross links (processed 13255, took 0.0026698 sec) FOF: have done 97 cross links (processed 2106, took 0.00244309 sec) FOF: have done 13 cross links (processed 358, took 0.00247088 sec) FOF: have done 2 cross links (processed 64, took 0.00232303 sec) FOF: have done 0 cross links (processed 5, took 0.00237016 sec) FOF: Local groups found. FOF: primary group finding took = 0.0987838 sec FOF: Start finding nearest dm-particle (presently allocated=97.5844 MB) FOF: fof-nearest iteration 1: need to repeat for 63765283 particles. (took = 0.0497626 sec) FOF: fof-nearest iteration 2: need to repeat for 55635283 particles. (took = 0.0547213 sec) FOF: fof-nearest iteration 3: need to repeat for 33935779 particles. (took = 0.0593383 sec) FOF: fof-nearest iteration 4: need to repeat for 11656192 particles. (took = 0.0450006 sec) FOF: fof-nearest iteration 5: need to repeat for 1798285 particles. (took = 0.0199133 sec) FOF: fof-nearest iteration 6: need to repeat for 33227 particles. (took = 0.00551222 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.238436 sec FOF: compiling local group data and catalogue took = 0.0132213 sec FOF: Total number of FOF groups with at least 32 particles: 1488689 FOF: Largest FOF group has 92 particles. FOF: Total number of particles in FOF groups: 134135272 FOF: group properties are now allocated.. (presently allocated=90.3417 MB) FOF: computation of group properties took = 0.00579017 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.226671 sec FOF: Finished computing FoF groups. Complete work took 0.792582 sec (presently allocated=87.8902 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.6256 MB) GRAVTREE: Tree construction done. took 0.282094 sec =83227.9 NTopnodes=36753 NTopleaves=32159 tree-build-scalability=0.558916 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 134042605 particles. (took 0.449021 sec) SUBFIND: ngb iteration 2: need to repeat for 133867406 particles. (took 0.389744 sec) SUBFIND: ngb iteration 3: need to repeat for 133533740 particles. (took 0.360998 sec) SUBFIND: ngb iteration 4: need to repeat for 132877389 particles. (took 0.342764 sec) SUBFIND: ngb iteration 5: need to repeat for 131559269 particles. (took 0.332315 sec) SUBFIND: ngb iteration 6: need to repeat for 128952997 particles. (took 0.334092 sec) SUBFIND: ngb iteration 7: need to repeat for 123829748 particles. (took 0.335167 sec) SUBFIND: ngb iteration 8: need to repeat for 114634480 particles. (took 0.327517 sec) SUBFIND: ngb iteration 9: need to repeat for 101311517 particles. (took 0.306864 sec) SUBFIND: ngb iteration 10: need to repeat for 87903896 particles. (took 0.268308 sec) SUBFIND: ngb iteration 11: need to repeat for 78287060 particles. (took 0.230127 sec) SUBFIND: ngb iteration 12: need to repeat for 72547041 particles. (took 0.202115 sec) SUBFIND: ngb iteration 13: need to repeat for 69386205 particles. (took 0.186224 sec) SUBFIND: ngb iteration 14: need to repeat for 67665003 particles. (took 0.177739 sec) SUBFIND: ngb iteration 15: need to repeat for 66678289 particles. (took 0.169127 sec) SUBFIND: ngb iteration 16: need to repeat for 66062106 particles. (took 0.158202 sec) SUBFIND: ngb iteration 17: need to repeat for 65641276 particles. (took 0.147214 sec) SUBFIND: ngb iteration 18: need to repeat for 65329125 particles. (took 0.137329 sec) SUBFIND: ngb iteration 19: need to repeat for 65080244 particles. (took 0.129156 sec) SUBFIND: ngb iteration 20: need to repeat for 64859690 particles. (took 0.12397 sec) SUBFIND: ngb iteration 21: need to repeat for 64632883 particles. (took 0.12176 sec) SUBFIND: ngb iteration 22: need to repeat for 64372158 particles. (took 0.121874 sec) SUBFIND: ngb iteration 23: need to repeat for 64045966 particles. (took 0.12378 sec) SUBFIND: ngb iteration 24: need to repeat for 63628547 particles. (took 0.125396 sec) SUBFIND: ngb iteration 25: need to repeat for 63086539 particles. (took 0.128048 sec) SUBFIND: ngb iteration 26: need to repeat for 62376283 particles. (took 0.132839 sec) SUBFIND: ngb iteration 27: need to repeat for 61450153 particles. (took 0.139833 sec) SUBFIND: ngb iteration 28: need to repeat for 60251394 particles. (took 0.15047 sec) SUBFIND: ngb iteration 29: need to repeat for 58695340 particles. (took 0.159798 sec) SUBFIND: ngb iteration 30: need to repeat for 56702340 particles. (took 0.171691 sec) SUBFIND: ngb iteration 31: need to repeat for 54179961 particles. (took 0.185014 sec) SUBFIND: ngb iteration 32: need to repeat for 51034570 particles. (took 0.19199 sec) SUBFIND: ngb iteration 33: need to repeat for 47191186 particles. (took 0.197672 sec) SUBFIND: ngb iteration 34: need to repeat for 42610961 particles. (took 0.196609 sec) SUBFIND: ngb iteration 35: need to repeat for 37320008 particles. (took 0.183829 sec) SUBFIND: ngb iteration 36: need to repeat for 31459913 particles. (took 0.163464 sec) SUBFIND: ngb iteration 37: need to repeat for 25268189 particles. (took 0.141001 sec) SUBFIND: ngb iteration 38: need to repeat for 19110035 particles. (took 0.119152 sec) SUBFIND: ngb iteration 39: need to repeat for 13408391 particles. (took 0.0968252 sec) SUBFIND: ngb iteration 40: need to repeat for 8583044 particles. (took 0.0743283 sec) SUBFIND: ngb iteration 41: need to repeat for 4894709 particles. (took 0.053158 sec) SUBFIND: ngb iteration 42: need to repeat for 2418848 particles. (took 0.0354826 sec) SUBFIND: ngb iteration 43: need to repeat for 1008953 particles. (took 0.0208994 sec) SUBFIND: ngb iteration 44: need to repeat for 343027 particles. (took 0.0110041 sec) SUBFIND: ngb iteration 45: need to repeat for 89000 particles. (took 0.00537395 sec) SUBFIND: ngb iteration 46: need to repeat for 16985 particles. (took 0.00232899 sec) SUBFIND: ngb iteration 47: need to repeat for 2422 particles. (took 0.000928687 sec) SUBFIND: ngb iteration 48: need to repeat for 273 particles. (took 0.000500239 sec) SUBFIND: ngb iteration 49: need to repeat for 18 particles. (took 0.000342686 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 8.16715 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135319 particles, for threshold size factor 0.6) SUBFIND: The other 1488689 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0039618 sec SUBFIND: particle balance=1.11581 SUBFIND: subfind_exchange() took 0.235494 sec SUBFIND: particle balance for processing=1.00057 SUBFIND: subdomain decomposition took 0.0516149 sec SUBFIND: serial subfind subdomain decomposition took 0.0511946 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1724 took 18.0924 sec SUBFIND: root-task=0: Serial processing of halo 0 took 18.2178 SUBFIND: Processing overall took (total time=19.1774 sec) SUBFIND: 0 out of 14780 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258751 ALLOCATE: Changing to MaxPartSph = 126148 SUBFIND: subfind_exchange() (for return to original CPU) took 0.261069 sec TREE: Full tree construction for all particles. (presently allocated=81.0109 MB) GRAVTREE: Tree construction done. took 0.80891 sec =83227.9 NTopnodes=36753 NTopleaves=32159 tree-build-scalability=0.558916 SUBFIND: SO iteration 1: need to repeat for 1488689 halo centers. (took 0.018976 sec) SUBFIND: SO iteration 2: need to repeat for 1488689 halo centers. (took 0.0174548 sec) SUBFIND: SO iteration 3: need to repeat for 1488689 halo centers. (took 0.0176597 sec) SUBFIND: SO iteration 4: need to repeat for 1488689 halo centers. (took 0.0173154 sec) SUBFIND: SO iteration 5: need to repeat for 1488689 halo centers. (took 0.0172675 sec) SUBFIND: SO iteration 6: need to repeat for 1488689 halo centers. (took 0.0173266 sec) SUBFIND: SO iteration 7: need to repeat for 1488689 halo centers. (took 0.017215 sec) SUBFIND: SO iteration 8: need to repeat for 1488689 halo centers. (took 0.0174489 sec) SUBFIND: SO iteration 9: need to repeat for 1488689 halo centers. (took 0.0172724 sec) SUBFIND: SO iteration 10: need to repeat for 1488689 halo centers. (took 0.0171889 sec) SUBFIND: SO iteration 11: need to repeat for 1488689 halo centers. (took 0.0174447 sec) SUBFIND: SO iteration 12: need to repeat for 1488689 halo centers. (took 0.0172645 sec) SUBFIND: SO iteration 13: need to repeat for 1488689 halo centers. (took 0.0174409 sec) SUBFIND: SO iteration 14: need to repeat for 1488689 halo centers. (took 0.0183234 sec) SUBFIND: SO iteration 15: need to repeat for 1488689 halo centers. (took 0.01818 sec) SUBFIND: SO iteration 16: need to repeat for 69259 halo centers. (took 0.0180787 sec) SUBFIND: SO iteration 17: need to repeat for 551 halo centers. (took 0.00423485 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000291988 sec) SUBFIND: SO iteration 1: need to repeat for 1488689 halo centers. (took 0.0184801 sec) SUBFIND: SO iteration 2: need to repeat for 1488689 halo centers. (took 0.0179151 sec) SUBFIND: SO iteration 3: need to repeat for 1488689 halo centers. (took 0.0179753 sec) SUBFIND: SO iteration 4: need to repeat for 1488689 halo centers. (took 0.0178763 sec) SUBFIND: SO iteration 5: need to repeat for 1488689 halo centers. (took 0.0184312 sec) SUBFIND: SO iteration 6: need to repeat for 1488689 halo centers. (took 0.0181931 sec) SUBFIND: SO iteration 7: need to repeat for 1488689 halo centers. (took 0.0177092 sec) SUBFIND: SO iteration 8: need to repeat for 1488689 halo centers. (took 0.0175838 sec) SUBFIND: SO iteration 9: need to repeat for 1488689 halo centers. (took 0.0177202 sec) SUBFIND: SO iteration 10: need to repeat for 1488689 halo centers. (took 0.0174595 sec) SUBFIND: SO iteration 11: need to repeat for 1488689 halo centers. (took 0.0174147 sec) SUBFIND: SO iteration 12: need to repeat for 1488689 halo centers. (took 0.0174104 sec) SUBFIND: SO iteration 13: need to repeat for 1488689 halo centers. (took 0.0172002 sec) SUBFIND: SO iteration 14: need to repeat for 1488689 halo centers. (took 0.0174364 sec) SUBFIND: SO iteration 15: need to repeat for 1488689 halo centers. (took 0.0172117 sec) SUBFIND: SO iteration 16: need to repeat for 36942 halo centers. (took 0.0168726 sec) SUBFIND: SO iteration 17: need to repeat for 163 halo centers. (took 0.00231058 sec) SUBFIND: SO iteration 1: need to repeat for 1488689 halo centers. (took 0.0172416 sec) SUBFIND: SO iteration 2: need to repeat for 1488689 halo centers. (took 0.0172778 sec) SUBFIND: SO iteration 3: need to repeat for 1488689 halo centers. (took 0.017438 sec) SUBFIND: SO iteration 4: need to repeat for 1488689 halo centers. (took 0.0172392 sec) SUBFIND: SO iteration 5: need to repeat for 1488689 halo centers. (took 0.0174758 sec) SUBFIND: SO iteration 6: need to repeat for 1488689 halo centers. (took 0.0172479 sec) SUBFIND: SO iteration 7: need to repeat for 1488689 halo centers. (took 0.0172575 sec) SUBFIND: SO iteration 8: need to repeat for 1488689 halo centers. (took 0.0173729 sec) SUBFIND: SO iteration 9: need to repeat for 1488689 halo centers. (took 0.0172636 sec) SUBFIND: SO iteration 10: need to repeat for 1488689 halo centers. (took 0.0172068 sec) SUBFIND: SO iteration 11: need to repeat for 1488689 halo centers. (took 0.0173383 sec) SUBFIND: SO iteration 12: need to repeat for 1488689 halo centers. (took 0.0173174 sec) SUBFIND: SO iteration 13: need to repeat for 1488689 halo centers. (took 0.0171613 sec) SUBFIND: SO iteration 14: need to repeat for 1488689 halo centers. (took 0.0173993 sec) SUBFIND: SO iteration 15: need to repeat for 1488689 halo centers. (took 0.0173086 sec) SUBFIND: SO iteration 16: need to repeat for 70099 halo centers. (took 0.0170249 sec) SUBFIND: SO iteration 17: need to repeat for 561 halo centers. (took 0.00370322 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000276886 sec) SUBFIND: SO iteration 1: need to repeat for 1488689 halo centers. (took 0.0173927 sec) SUBFIND: SO iteration 2: need to repeat for 1488689 halo centers. (took 0.0172879 sec) SUBFIND: SO iteration 3: need to repeat for 1488689 halo centers. (took 0.0169944 sec) SUBFIND: SO iteration 4: need to repeat for 1488689 halo centers. (took 0.0172696 sec) SUBFIND: SO iteration 5: need to repeat for 1488689 halo centers. (took 0.017218 sec) SUBFIND: SO iteration 6: need to repeat for 1488689 halo centers. (took 0.0172214 sec) SUBFIND: SO iteration 7: need to repeat for 1488689 halo centers. (took 0.0173282 sec) SUBFIND: SO iteration 8: need to repeat for 1488689 halo centers. (took 0.0171252 sec) SUBFIND: SO iteration 9: need to repeat for 1488689 halo centers. (took 0.0172417 sec) SUBFIND: SO iteration 10: need to repeat for 1488689 halo centers. (took 0.0173569 sec) SUBFIND: SO iteration 11: need to repeat for 1488689 halo centers. (took 0.0171716 sec) SUBFIND: SO iteration 12: need to repeat for 1488689 halo centers. (took 0.0172268 sec) SUBFIND: SO iteration 13: need to repeat for 1488689 halo centers. (took 0.0172799 sec) SUBFIND: SO iteration 14: need to repeat for 1488689 halo centers. (took 0.0170969 sec) SUBFIND: SO iteration 15: need to repeat for 1488689 halo centers. (took 0.0172097 sec) SUBFIND: SO iteration 16: need to repeat for 1059701 halo centers. (took 0.0172963 sec) SUBFIND: SO iteration 17: need to repeat for 65671 halo centers. (took 0.0143888 sec) SUBFIND: SO iteration 18: need to repeat for 3464 halo centers. (took 0.00346511 sec) SUBFIND: SO iteration 19: need to repeat for 8 halo centers. (took 0.000434171 sec) SUBFIND: determining spherical overdensity masses took 1.14972 sec SUBFIND: assembled and ordered groups and subhalos (took 0.264092 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.8877 sec, total size 559.566 MB, corresponds to effective I/O rate of 114.485 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.88907 sec SUBFIND: Finished with SUBFIND. (total time=35.2809 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1503420 SUBFIND: Largest subhalo has 92 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134135272 FOF: preparing output order of particles took 0.896915 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.61121 sec, total size 5353.55 MB, corresponds to effective I/O rate of 557.011 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 786 (rank 786 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 563 (rank 563 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 571 (rank 571 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.