TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186301.64 Mb (on task= 243), Smallest = 186180.37 Mb (on task= 0), Average = 186276.52 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5206.39 Mb (on task= 0), Smallest = 5085.25 Mb (on task= 243), Average = 5110.36 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5206.39 Mb (on task= 0), Smallest = 5085.25 Mb (on task= 243), Average = 5110.36 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 15), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 14.9768 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 65714372 (tot= 65714372) masstab= 0 READIC: Type 1: 68386746 (tot= 68386746) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 34308 (tot= 34308) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 7.71953 sec, total size 6390.91 MB, corresponds to effective I/O rate of 827.889 MB/sec READIC: Total number of particles : 134135426 INIT: Testing ID uniqueness... INIT: success. took=0.0593108 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32418, determination of top-level tree involved 6 iterations and took 0.385913 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=180 for nextra=80, reaching maximum imbalance of 1.11681|1.11683 DOMAIN: combining multiple-domains took 0.0153765 sec DOMAIN: exchange of 68421054 particles DOMAIN: particle exchange done. (took 0.196406 sec) DOMAIN: domain decomposition done. (took in total 0.60356 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0332184 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=87.3936 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0896806 sec =65491.5 NTopnodes=37049 NTopleaves=32418 FOF: Start linking particles (presently allocated=97.3591 MB) FOF: linking of small cells took 0.000812149 sec FOF: local links done (took 0.0766195 sec, avg-work=0.0663134, imbalance=1.1306). FOF: Marked=181701 out of the 68386746 primaries which are linked FOF: begin linking across processors (presently allocated=98.3512 MB) FOF: have done 13617 cross links (processed 181701, took 0.0037852 sec) FOF: have done 3133 cross links (processed 91425, took 0.00303162 sec) FOF: have done 523 cross links (processed 13576, took 0.00255352 sec) FOF: have done 98 cross links (processed 2287, took 0.00252989 sec) FOF: have done 23 cross links (processed 408, took 0.00239037 sec) FOF: have done 3 cross links (processed 117, took 0.00233671 sec) FOF: have done 0 cross links (processed 21, took 0.00233153 sec) FOF: Local groups found. FOF: primary group finding took = 0.101058 sec FOF: Start finding nearest dm-particle (presently allocated=97.3591 MB) FOF: fof-nearest iteration 1: need to repeat for 63984029 particles. (took = 0.050591 sec) FOF: fof-nearest iteration 2: need to repeat for 55304246 particles. (took = 0.0559602 sec) FOF: fof-nearest iteration 3: need to repeat for 32542796 particles. (took = 0.0604451 sec) FOF: fof-nearest iteration 4: need to repeat for 10574442 particles. (took = 0.0442539 sec) FOF: fof-nearest iteration 5: need to repeat for 1578175 particles. (took = 0.0186531 sec) FOF: fof-nearest iteration 6: need to repeat for 28983 particles. (took = 0.00507682 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.239145 sec FOF: compiling local group data and catalogue took = 0.0130667 sec FOF: Total number of FOF groups with at least 32 particles: 1264801 FOF: Largest FOF group has 108 particles. FOF: Total number of particles in FOF groups: 134135403 FOF: group properties are now allocated.. (presently allocated=90.3178 MB) FOF: computation of group properties took = 0.00561157 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.229259 sec FOF: Finished computing FoF groups. Complete work took 0.796514 sec (presently allocated=87.9148 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=91.4067 MB) GRAVTREE: Tree construction done. took 0.271134 sec =81463.2 NTopnodes=37049 NTopleaves=32418 tree-build-scalability=0.545732 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 133683432 particles. (took 0.456505 sec) SUBFIND: ngb iteration 2: need to repeat for 133244392 particles. (took 0.404859 sec) SUBFIND: ngb iteration 3: need to repeat for 132599622 particles. (took 0.384309 sec) SUBFIND: ngb iteration 4: need to repeat for 131530129 particles. (took 0.372672 sec) SUBFIND: ngb iteration 5: need to repeat for 129585359 particles. (took 0.353449 sec) SUBFIND: ngb iteration 6: need to repeat for 125844116 particles. (took 0.348755 sec) SUBFIND: ngb iteration 7: need to repeat for 118760948 particles. (took 0.341016 sec) SUBFIND: ngb iteration 8: need to repeat for 107226355 particles. (took 0.323283 sec) SUBFIND: ngb iteration 9: need to repeat for 93551102 particles. (took 0.291793 sec) SUBFIND: ngb iteration 10: need to repeat for 82274823 particles. (took 0.254348 sec) SUBFIND: ngb iteration 11: need to repeat for 75012929 particles. (took 0.220938 sec) SUBFIND: ngb iteration 12: need to repeat for 70903629 particles. (took 0.204383 sec) SUBFIND: ngb iteration 13: need to repeat for 68675396 particles. (took 0.196844 sec) SUBFIND: ngb iteration 14: need to repeat for 67376236 particles. (took 0.192534 sec) SUBFIND: ngb iteration 15: need to repeat for 66489801 particles. (took 0.184207 sec) SUBFIND: ngb iteration 16: need to repeat for 65777135 particles. (took 0.173736 sec) SUBFIND: ngb iteration 17: need to repeat for 65204695 particles. (took 0.161671 sec) SUBFIND: ngb iteration 18: need to repeat for 64794154 particles. (took 0.149405 sec) SUBFIND: ngb iteration 19: need to repeat for 64498462 particles. (took 0.140075 sec) SUBFIND: ngb iteration 20: need to repeat for 64254075 particles. (took 0.133728 sec) SUBFIND: ngb iteration 21: need to repeat for 64013244 particles. (took 0.131064 sec) SUBFIND: ngb iteration 22: need to repeat for 63738984 particles. (took 0.131376 sec) SUBFIND: ngb iteration 23: need to repeat for 63399061 particles. (took 0.132353 sec) SUBFIND: ngb iteration 24: need to repeat for 62965485 particles. (took 0.133927 sec) SUBFIND: ngb iteration 25: need to repeat for 62405745 particles. (took 0.137083 sec) SUBFIND: ngb iteration 26: need to repeat for 61672940 particles. (took 0.141226 sec) SUBFIND: ngb iteration 27: need to repeat for 60717150 particles. (took 0.147233 sec) SUBFIND: ngb iteration 28: need to repeat for 59471620 particles. (took 0.154477 sec) SUBFIND: ngb iteration 29: need to repeat for 57865155 particles. (took 0.164083 sec) SUBFIND: ngb iteration 30: need to repeat for 55804201 particles. (took 0.175322 sec) SUBFIND: ngb iteration 31: need to repeat for 53201368 particles. (took 0.190238 sec) SUBFIND: ngb iteration 32: need to repeat for 49968303 particles. (took 0.20267 sec) SUBFIND: ngb iteration 33: need to repeat for 46043113 particles. (took 0.211064 sec) SUBFIND: ngb iteration 34: need to repeat for 41392038 particles. (took 0.208652 sec) SUBFIND: ngb iteration 35: need to repeat for 36038169 particles. (took 0.196927 sec) SUBFIND: ngb iteration 36: need to repeat for 30144728 particles. (took 0.17862 sec) SUBFIND: ngb iteration 37: need to repeat for 23990865 particles. (took 0.149525 sec) SUBFIND: ngb iteration 38: need to repeat for 17915599 particles. (took 0.122928 sec) SUBFIND: ngb iteration 39: need to repeat for 12360287 particles. (took 0.0953496 sec) SUBFIND: ngb iteration 40: need to repeat for 7735850 particles. (took 0.0712109 sec) SUBFIND: ngb iteration 41: need to repeat for 4293726 particles. (took 0.0491586 sec) SUBFIND: ngb iteration 42: need to repeat for 2058047 particles. (took 0.0314344 sec) SUBFIND: ngb iteration 43: need to repeat for 821898 particles. (took 0.0185743 sec) SUBFIND: ngb iteration 44: need to repeat for 263120 particles. (took 0.0102059 sec) SUBFIND: ngb iteration 45: need to repeat for 64709 particles. (took 0.00479301 sec) SUBFIND: ngb iteration 46: need to repeat for 11799 particles. (took 0.00189143 sec) SUBFIND: ngb iteration 47: need to repeat for 1518 particles. (took 0.000860672 sec) SUBFIND: ngb iteration 48: need to repeat for 185 particles. (took 0.000424046 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 8.4853 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135426 particles, for threshold size factor 0.6) SUBFIND: The other 1264801 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.00387824 sec SUBFIND: particle balance=1.11583 SUBFIND: subfind_exchange() took 0.236695 sec SUBFIND: particle balance for processing=1.00009 SUBFIND: subdomain decomposition took 0.0513961 sec SUBFIND: serial subfind subdomain decomposition took 0.0511958 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=1464 took 15.6432 sec SUBFIND: root-task=0: Serial processing of halo 0 took 15.7677 SUBFIND: Processing overall took (total time=16.0653 sec) SUBFIND: 0 out of 19832 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258751 ALLOCATE: Changing to MaxPartSph = 126765 SUBFIND: subfind_exchange() (for return to original CPU) took 0.261007 sec TREE: Full tree construction for all particles. (presently allocated=80.7478 MB) GRAVTREE: Tree construction done. took 0.808723 sec =81463.2 NTopnodes=37049 NTopleaves=32418 tree-build-scalability=0.545732 SUBFIND: SO iteration 1: need to repeat for 1264801 halo centers. (took 0.0182253 sec) SUBFIND: SO iteration 2: need to repeat for 1264801 halo centers. (took 0.01674 sec) SUBFIND: SO iteration 3: need to repeat for 1264801 halo centers. (took 0.0166376 sec) SUBFIND: SO iteration 4: need to repeat for 1264801 halo centers. (took 0.0166499 sec) SUBFIND: SO iteration 5: need to repeat for 1264801 halo centers. (took 0.0164453 sec) SUBFIND: SO iteration 6: need to repeat for 1264801 halo centers. (took 0.0164157 sec) SUBFIND: SO iteration 7: need to repeat for 1264801 halo centers. (took 0.0163337 sec) SUBFIND: SO iteration 8: need to repeat for 1264801 halo centers. (took 0.0163321 sec) SUBFIND: SO iteration 9: need to repeat for 1264801 halo centers. (took 0.0164411 sec) SUBFIND: SO iteration 10: need to repeat for 1264801 halo centers. (took 0.0165422 sec) SUBFIND: SO iteration 11: need to repeat for 1264801 halo centers. (took 0.0163883 sec) SUBFIND: SO iteration 12: need to repeat for 1264801 halo centers. (took 0.0167003 sec) SUBFIND: SO iteration 13: need to repeat for 1264801 halo centers. (took 0.018192 sec) SUBFIND: SO iteration 14: need to repeat for 1264801 halo centers. (took 0.0180454 sec) SUBFIND: SO iteration 15: need to repeat for 1264801 halo centers. (took 0.0181207 sec) SUBFIND: SO iteration 16: need to repeat for 47333 halo centers. (took 0.0183603 sec) SUBFIND: SO iteration 17: need to repeat for 299 halo centers. (took 0.00332379 sec) SUBFIND: SO iteration 18: need to repeat for 5 halo centers. (took 0.000581549 sec) SUBFIND: SO iteration 1: need to repeat for 1264801 halo centers. (took 0.0175294 sec) SUBFIND: SO iteration 2: need to repeat for 1264801 halo centers. (took 0.017398 sec) SUBFIND: SO iteration 3: need to repeat for 1264801 halo centers. (took 0.0176588 sec) SUBFIND: SO iteration 4: need to repeat for 1264801 halo centers. (took 0.0170625 sec) SUBFIND: SO iteration 5: need to repeat for 1264801 halo centers. (took 0.0171728 sec) SUBFIND: SO iteration 6: need to repeat for 1264801 halo centers. (took 0.0171372 sec) SUBFIND: SO iteration 7: need to repeat for 1264801 halo centers. (took 0.0164096 sec) SUBFIND: SO iteration 8: need to repeat for 1264801 halo centers. (took 0.0168592 sec) SUBFIND: SO iteration 9: need to repeat for 1264801 halo centers. (took 0.0167025 sec) SUBFIND: SO iteration 10: need to repeat for 1264801 halo centers. (took 0.0165474 sec) SUBFIND: SO iteration 11: need to repeat for 1264801 halo centers. (took 0.016453 sec) SUBFIND: SO iteration 12: need to repeat for 1264801 halo centers. (took 0.0164451 sec) SUBFIND: SO iteration 13: need to repeat for 1264801 halo centers. (took 0.0163769 sec) SUBFIND: SO iteration 14: need to repeat for 1264801 halo centers. (took 0.0162924 sec) SUBFIND: SO iteration 15: need to repeat for 1264801 halo centers. (took 0.0165517 sec) SUBFIND: SO iteration 16: need to repeat for 24799 halo centers. (took 0.0160786 sec) SUBFIND: SO iteration 17: need to repeat for 145 halo centers. (took 0.00169644 sec) SUBFIND: SO iteration 1: need to repeat for 1264801 halo centers. (took 0.0163375 sec) SUBFIND: SO iteration 2: need to repeat for 1264801 halo centers. (took 0.0163383 sec) SUBFIND: SO iteration 3: need to repeat for 1264801 halo centers. (took 0.0166036 sec) SUBFIND: SO iteration 4: need to repeat for 1264801 halo centers. (took 0.01643 sec) SUBFIND: SO iteration 5: need to repeat for 1264801 halo centers. (took 0.0162888 sec) SUBFIND: SO iteration 6: need to repeat for 1264801 halo centers. (took 0.0164238 sec) SUBFIND: SO iteration 7: need to repeat for 1264801 halo centers. (took 0.016483 sec) SUBFIND: SO iteration 8: need to repeat for 1264801 halo centers. (took 0.0163202 sec) SUBFIND: SO iteration 9: need to repeat for 1264801 halo centers. (took 0.0164973 sec) SUBFIND: SO iteration 10: need to repeat for 1264801 halo centers. (took 0.01629 sec) SUBFIND: SO iteration 11: need to repeat for 1264801 halo centers. (took 0.0163432 sec) SUBFIND: SO iteration 12: need to repeat for 1264801 halo centers. (took 0.0163886 sec) SUBFIND: SO iteration 13: need to repeat for 1264801 halo centers. (took 0.0163818 sec) SUBFIND: SO iteration 14: need to repeat for 1264801 halo centers. (took 0.0163268 sec) SUBFIND: SO iteration 15: need to repeat for 1264801 halo centers. (took 0.0162518 sec) SUBFIND: SO iteration 16: need to repeat for 47959 halo centers. (took 0.0160093 sec) SUBFIND: SO iteration 17: need to repeat for 301 halo centers. (took 0.00286835 sec) SUBFIND: SO iteration 18: need to repeat for 5 halo centers. (took 0.000243012 sec) SUBFIND: SO iteration 1: need to repeat for 1264801 halo centers. (took 0.0164172 sec) SUBFIND: SO iteration 2: need to repeat for 1264801 halo centers. (took 0.0165024 sec) SUBFIND: SO iteration 3: need to repeat for 1264801 halo centers. (took 0.0161209 sec) SUBFIND: SO iteration 4: need to repeat for 1264801 halo centers. (took 0.0164651 sec) SUBFIND: SO iteration 5: need to repeat for 1264801 halo centers. (took 0.0163002 sec) SUBFIND: SO iteration 6: need to repeat for 1264801 halo centers. (took 0.0164334 sec) SUBFIND: SO iteration 7: need to repeat for 1264801 halo centers. (took 0.0164875 sec) SUBFIND: SO iteration 8: need to repeat for 1264801 halo centers. (took 0.0163249 sec) SUBFIND: SO iteration 9: need to repeat for 1264801 halo centers. (took 0.0163225 sec) SUBFIND: SO iteration 10: need to repeat for 1264801 halo centers. (took 0.0164859 sec) SUBFIND: SO iteration 11: need to repeat for 1264801 halo centers. (took 0.016405 sec) SUBFIND: SO iteration 12: need to repeat for 1264801 halo centers. (took 0.0164721 sec) SUBFIND: SO iteration 13: need to repeat for 1264801 halo centers. (took 0.0163995 sec) SUBFIND: SO iteration 14: need to repeat for 1264801 halo centers. (took 0.0165176 sec) SUBFIND: SO iteration 15: need to repeat for 1264801 halo centers. (took 0.0164792 sec) SUBFIND: SO iteration 16: need to repeat for 850809 halo centers. (took 0.0162808 sec) SUBFIND: SO iteration 17: need to repeat for 45813 halo centers. (took 0.0134315 sec) SUBFIND: SO iteration 18: need to repeat for 2269 halo centers. (took 0.00257844 sec) SUBFIND: SO iteration 19: need to repeat for 7 halo centers. (took 0.00034471 sec) SUBFIND: determining spherical overdensity masses took 1.09393 sec SUBFIND: assembled and ordered groups and subhalos (took 0.246273 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.89356 sec, total size 476.873 MB, corresponds to effective I/O rate of 97.4491 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.89477 sec SUBFIND: Finished with SUBFIND. (total time=32.4098 sec) SUBFIND: Total number of subhalos with at least 20 particles: 1284410 SUBFIND: Largest subhalo has 108 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134135391 FOF: preparing output order of particles took 0.887723 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 8.70118 sec, total size 5357.22 MB, corresponds to effective I/O rate of 615.688 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 868 (rank 868 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 885 (rank 885 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 891 (rank 891 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 895 (rank 895 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 870 (rank 870 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 877 (rank 877 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.