TACC: Starting up job 4244611 TACC: Starting parallel tasks... Shared memory islands host a minimum of 28 and a maximum of 28 MPI ranks. We shall use 32 MPI ranks in total for assisting one-sided communication (1 per shared memory node). ___ __ ____ ___ ____ ____ __ / __) /__\ ( _ \ / __)( ___)(_ _)___ /. | ( (_-. /(__)\ )(_) )( (_-. )__) )( (___)(_ _) \___/(__)(__)(____/ \___/(____) (__) (_) This is Gadget, version 4.0. Git commit 30019281bed6dcfb8d018c09095aeaa1e6ff5042, Wed Aug 11 12:22:28 2021 +0200 Code was compiled with the following compiler and flags: mpicxx -std=c++11 -Wwrite-strings -Wredundant-decls -Woverloaded-virtual -Wcast-qual -Wcast-align -Wpointer-arith -Wmissing-declarations -g -Wall -W -O3 -march=native -I/opt/apps/gcc9_1/hdf5/1.10.4/x86_64/include -I/opt/apps/gcc9_1/gsl/2.6/include -I/opt/apps/gcc9_1/impi19_0/fftw3/3.3.8/include -Ibuild -Isrc Code was compiled with the following settings: DOUBLEPRECISION=1 FOF FOF_GROUP_MIN_LEN=32 FOF_LINKLENGTH=0.2 FOF_PRIMARY_LINK_TYPES=2 FOF_SECONDARY_LINK_TYPES=1+16+32 GADGET2_HEADER IDS_64BIT NTYPES=6 PERIODIC PMGRID=128 SELFGRAVITY SUBFIND Running on 864 MPI tasks. BEGRUN: Size of particle structure 136 [bytes] BEGRUN: Size of sph particle structure 192 [bytes] BEGRUN: Size of gravity tree node 104 [bytes] BEGRUN: Size of neighbour tree node 192 [bytes] BEGRUN: Size of subfind auxiliary data 104 [bytes] ------------------------------------------------------------------------------------------------------------------------- AvailMem: Largest = 186307.62 Mb (on task= 324), Smallest = 186184.17 Mb (on task= 0), Average = 186278.00 Mb Total Mem: Largest = 191386.89 Mb (on task= 54), Smallest = 191386.76 Mb (on task= 0), Average = 191386.89 Mb Committed_AS: Largest = 5202.59 Mb (on task= 0), Smallest = 5079.27 Mb (on task= 324), Average = 5108.88 Mb SwapTotal: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb SwapFree: Largest = 0.00 Mb (on task= 0), Smallest = 0.00 Mb (on task= 0), Average = 0.00 Mb AllocMem: Largest = 5202.59 Mb (on task= 0), Smallest = 5079.27 Mb (on task= 324), Average = 5108.88 Mb avail /dev/shm: Largest = 95257.22 Mb (on task= 81), Smallest = 95257.12 Mb (on task= 3), Average = 95257.20 Mb ------------------------------------------------------------------------------------------------------------------------- Task=0 has the maximum commited memory and is host: c202-001.frontera.tacc.utexas.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Obtaining parameters from file 'param.txt': InitCondFile lcdm_gas_littleendian.dat OutputDir output SnapshotFileBase snap OutputListFilename outputs_lcdm_gas.txt ICFormat 3 SnapFormat 3 TimeLimitCPU 180000 CpuTimeBetRestartFile 7200 MaxMemSize 3000 TimeBegin 0.0909091 TimeMax 1 ComovingIntegrationOn 1 Omega0 0.2814 OmegaLambda 0.7186 OmegaBaryon 0.0464 HubbleParam 0.697 Hubble 0.1 BoxSize 400000 OutputListOn 0 TimeBetSnapshot 1.83842 TimeOfFirstSnapshot 0.047619 TimeBetStatistics 0.05 NumFilesPerSnapshot 1 MaxFilesWithConcurrentIO 1 ErrTolIntAccuracy 0.012 CourantFac 0.15 MaxSizeTimestep 0.025 MinSizeTimestep 0 TypeOfOpeningCriterion 1 ErrTolTheta 0.9 ErrTolThetaMax 1 ErrTolForceAcc 0.0025 TopNodeFactor 2.5 ActivePartFracForNewDomainDecomp 0.01 DesNumNgb 64 MaxNumNgbDeviation 3 UnitLength_in_cm 3.08568e+21 UnitMass_in_g 1.989e+43 UnitVelocity_in_cm_per_s 100000 GravityConstantInternal 0 DesLinkNgb 20 SofteningComovingClass0 1.5 SofteningComovingClass1 1.5 SofteningComovingClass2 1.5 SofteningComovingClass3 1.5 SofteningComovingClass4 1.5 SofteningComovingClass5 1.5 SofteningMaxPhysClass0 1.5 SofteningMaxPhysClass1 1.5 SofteningMaxPhysClass2 1.5 SofteningMaxPhysClass3 1.5 SofteningMaxPhysClass4 1.5 SofteningMaxPhysClass5 1.5 SofteningClassOfPartType0 0 SofteningClassOfPartType1 0 SofteningClassOfPartType2 0 SofteningClassOfPartType3 0 SofteningClassOfPartType4 0 SofteningClassOfPartType5 0 ArtBulkViscConst 1 MinEgySpec 0 InitGasTemp 1000 MALLOC: Allocation of shared memory took 17.0214 sec BEGRUN: Hubble (internal units) = 0.1 BEGRUN: h = 0.697 BEGRUN: G (internal units) = 43018.7 BEGRUN: UnitMass_in_g = 1.989e+43 BEGRUN: UnitLenth_in_cm = 3.08568e+21 BEGRUN: UnitTime_in_s = 3.08568e+16 BEGRUN: UnitVelocity_in_cm_per_s = 100000 BEGRUN: UnitDensity_in_cgs = 6.76991e-22 BEGRUN: UnitEnergy_in_cgs = 1.989e+53 READIC: filenr=0, 'output/snap_066.hdf5' contains: READIC: Type 0 (gas): 65870035 (tot= 65870035) masstab= 0 READIC: Type 1: 68002139 (tot= 68002139) masstab= 0 READIC: Type 2: 0 (tot= 0) masstab= 0 READIC: Type 3: 0 (tot= 0) masstab= 0 READIC: Type 4: 263406 (tot= 263406) masstab= 0 READIC: Type 5: 0 (tot= 0) masstab= 0 READIC: Reading file `output/snap_066.hdf5' on task=0 and distribute it to 0 to 863. READIC: reading block 0 (Coordinates)... READIC: reading block 1 (Velocities)... READIC: reading block 2 (ParticleIDs)... READIC: reading block 3 (Masses)... READIC: reading block 4 (InternalEnergy)... READIC: reading block 5 (Density)... Dataset Density not present for particle type 0, using zero. READIC: reading block 6 (SmoothingLength)... Dataset SmoothingLength not present for particle type 0, using zero. READIC: reading done. Took 5.11564 sec, total size 6391.51 MB, corresponds to effective I/O rate of 1249.41 MB/sec READIC: Total number of particles : 134135580 INIT: Testing ID uniqueness... INIT: success. took=0.0595449 sec DOMAIN: Begin domain decomposition (sync-point 0). DOMAIN: Sum=4 TotalCost=4 NumTimeBinsToBeBalanced=1 MultipleDomains=4 DOMAIN: Increasing TopNodeAllocFactor=0.08 new value=0.104 DOMAIN: Increasing TopNodeAllocFactor=0.104 new value=0.1352 DOMAIN: Increasing TopNodeAllocFactor=0.1352 new value=0.17576 DOMAIN: Increasing TopNodeAllocFactor=0.17576 new value=0.228488 DOMAIN: Increasing TopNodeAllocFactor=0.228488 new value=0.297034 DOMAIN: Increasing TopNodeAllocFactor=0.297034 new value=0.386145 DOMAIN: Increasing TopNodeAllocFactor=0.386145 new value=0.501988 DOMAIN: Increasing TopNodeAllocFactor=0.501988 new value=0.652585 DOMAIN: Increasing TopNodeAllocFactor=0.652585 new value=0.84836 DOMAIN: Increasing TopNodeAllocFactor=0.84836 new value=1.10287 DOMAIN: Increasing TopNodeAllocFactor=1.10287 new value=1.43373 DOMAIN: Increasing TopNodeAllocFactor=1.43373 new value=1.86385 DOMAIN: Increasing TopNodeAllocFactor=1.86385 new value=2.423 DOMAIN: Increasing TopNodeAllocFactor=2.423 new value=3.1499 DOMAIN: Increasing TopNodeAllocFactor=3.1499 new value=4.09487 DOMAIN: Increasing TopNodeAllocFactor=4.09487 new value=5.32333 DOMAIN: NTopleaves=32362, determination of top-level tree involved 6 iterations and took 0.382595 sec DOMAIN: we are going to try at most 503 different settings for combining the domains on tasks=864, nnodes=32 DOMAIN: total_cost=4 total_load=2 DOMAIN: best solution found after 1 iterations by task=187 for nextra=157, reaching maximum imbalance of 1.12125|1.1221 DOMAIN: combining multiple-domains took 0.0151095 sec DOMAIN: exchange of 68265545 particles DOMAIN: particle exchange done. (took 0.18388 sec) DOMAIN: domain decomposition done. (took in total 0.587348 sec) PEANO: Begin Peano-Hilbert order... PEANO: done, took 0.0340841 sec. INIT: Converting u -> entropy All.cf_a3inv=1000 FOF: Begin to compute FoF group catalogue... (presently allocated=87.451 MB) FOF: Comoving linking length: 11.3647 FOFTREE: Ngb-tree construction done. took 0.0858261 sec =59008.9 NTopnodes=36985 NTopleaves=32362 FOF: Start linking particles (presently allocated=96.7009 MB) FOF: linking of small cells took 0.000929879 sec FOF: local links done (took 0.0868046 sec, avg-work=0.0762905, imbalance=1.12559). FOF: Marked=191309 out of the 68002139 primaries which are linked FOF: begin linking across processors (presently allocated=97.6889 MB) FOF: have done 10788 cross links (processed 191309, took 0.00371604 sec) FOF: have done 2955 cross links (processed 96060, took 0.00302336 sec) FOF: have done 564 cross links (processed 14984, took 0.00269825 sec) FOF: have done 128 cross links (processed 3225, took 0.0024214 sec) FOF: have done 24 cross links (processed 767, took 0.0024194 sec) FOF: have done 2 cross links (processed 131, took 0.00238242 sec) FOF: have done 0 cross links (processed 12, took 0.00236775 sec) FOF: Local groups found. FOF: primary group finding took = 0.11148 sec FOF: Start finding nearest dm-particle (presently allocated=96.7009 MB) FOF: fof-nearest iteration 1: need to repeat for 63957129 particles. (took = 0.0542299 sec) FOF: fof-nearest iteration 2: need to repeat for 53560180 particles. (took = 0.0623814 sec) FOF: fof-nearest iteration 3: need to repeat for 28304623 particles. (took = 0.0685311 sec) FOF: fof-nearest iteration 4: need to repeat for 7611392 particles. (took = 0.046879 sec) FOF: fof-nearest iteration 5: need to repeat for 980824 particles. (took = 0.0165368 sec) FOF: fof-nearest iteration 6: need to repeat for 16697 particles. (took = 0.00425625 sec) FOF: done finding nearest dm-particle FOF: attaching gas and star particles to nearest dm particles took = 0.257087 sec FOF: compiling local group data and catalogue took = 0.0126098 sec FOF: Total number of FOF groups with at least 32 particles: 553138 FOF: Largest FOF group has 248 particles. FOF: Total number of particles in FOF groups: 134135564 FOF: group properties are now allocated.. (presently allocated=90.1259 MB) FOF: computation of group properties took = 0.00449276 sec FOF: start assigning group numbers FOF: Assigning of group numbers took = 0.219219 sec FOF: Finished computing FoF groups. Complete work took 0.805853 sec (presently allocated=87.6834 MB) SUBFIND: We now execute a parallel version of SUBFIND. TREE: Full tree construction for all particles. (presently allocated=90.4086 MB) GRAVTREE: Tree construction done. took 0.26826 sec =73792.8 NTopnodes=36985 NTopleaves=32362 tree-build-scalability=0.499379 SUBFIND: finding total densities around all particles SUBFIND: ngb iteration 1: need to repeat for 134135564 particles. (took 0.594796 sec) SUBFIND: ngb iteration 2: need to repeat for 134135564 particles. (took 0.511778 sec) SUBFIND: ngb iteration 3: need to repeat for 134135564 particles. (took 0.467005 sec) SUBFIND: ngb iteration 4: need to repeat for 134135520 particles. (took 0.442952 sec) SUBFIND: ngb iteration 5: need to repeat for 134135492 particles. (took 0.431385 sec) SUBFIND: ngb iteration 6: need to repeat for 134135435 particles. (took 0.428036 sec) SUBFIND: ngb iteration 7: need to repeat for 134135234 particles. (took 0.436632 sec) SUBFIND: ngb iteration 8: need to repeat for 134134551 particles. (took 0.454592 sec) SUBFIND: ngb iteration 9: need to repeat for 134128092 particles. (took 0.478541 sec) SUBFIND: ngb iteration 10: need to repeat for 133871878 particles. (took 0.507511 sec) SUBFIND: ngb iteration 11: need to repeat for 131206701 particles. (took 0.540371 sec) SUBFIND: ngb iteration 12: need to repeat for 124981472 particles. (took 0.560384 sec) SUBFIND: ngb iteration 13: need to repeat for 115639589 particles. (took 0.561242 sec) SUBFIND: ngb iteration 14: need to repeat for 104327835 particles. (took 0.545054 sec) SUBFIND: ngb iteration 15: need to repeat for 93092020 particles. (took 0.512884 sec) SUBFIND: ngb iteration 16: need to repeat for 82693533 particles. (took 0.473816 sec) SUBFIND: ngb iteration 17: need to repeat for 72729042 particles. (took 0.435298 sec) SUBFIND: ngb iteration 18: need to repeat for 62701972 particles. (took 0.392646 sec) SUBFIND: ngb iteration 19: need to repeat for 52125934 particles. (took 0.345769 sec) SUBFIND: ngb iteration 20: need to repeat for 40610353 particles. (took 0.304608 sec) SUBFIND: ngb iteration 21: need to repeat for 28652575 particles. (took 0.258726 sec) SUBFIND: ngb iteration 22: need to repeat for 17591937 particles. (took 0.202975 sec) SUBFIND: ngb iteration 23: need to repeat for 8932573 particles. (took 0.141234 sec) SUBFIND: ngb iteration 24: need to repeat for 3620898 particles. (took 0.0855795 sec) SUBFIND: ngb iteration 25: need to repeat for 1091241 particles. (took 0.0422821 sec) SUBFIND: ngb iteration 26: need to repeat for 222405 particles. (took 0.0161309 sec) SUBFIND: ngb iteration 27: need to repeat for 28166 particles. (took 0.00428897 sec) SUBFIND: ngb iteration 28: need to repeat for 2084 particles. (took 0.00088587 sec) SUBFIND: ngb iteration 29: need to repeat for 86 particles. (took 0.000412732 sec) SUBFIND: ngb iteration 30: need to repeat for 14 particles. (took 0.000224831 sec) SUBFIND: ngb iteration 31: need to repeat for 12 particles. (took 0.000225298 sec) SUBFIND: ngb iteration 32: need to repeat for 12 particles. (took 0.000198152 sec) SUBFIND: ngb iteration 33: need to repeat for 12 particles. (took 0.000213321 sec) SUBFIND: ngb iteration 34: need to repeat for 12 particles. (took 0.00019357 sec) SUBFIND: ngb iteration 35: need to repeat for 12 particles. (took 0.000202861 sec) SUBFIND: ngb iteration 36: need to repeat for 12 particles. (took 0.000243902 sec) SUBFIND: ngb iteration 37: need to repeat for 12 particles. (took 0.000301486 sec) SUBFIND: ngb iteration 38: need to repeat for 12 particles. (took 0.000262305 sec) SUBFIND: ngb iteration 39: need to repeat for 12 particles. (took 0.00020678 sec) SUBFIND: ngb iteration 40: need to repeat for 12 particles. (took 0.000235144 sec) SUBFIND: ngb iteration 41: need to repeat for 12 particles. (took 0.000243766 sec) SUBFIND: ngb iteration 42: need to repeat for 9 particles. (took 0.000221079 sec) SUBFIND: ngb iteration 43: need to repeat for 9 particles. (took 0.000209238 sec) SUBFIND: ngb iteration 44: need to repeat for 7 particles. (took 0.000216004 sec) SUBFIND: ngb iteration 45: need to repeat for 2 particles. (took 0.000217956 sec) SUBFIND: iteration to correct primary neighbor count and density estimate took 10.1855 sec SUBFIND: Number of FOF halos treated with collective SubFind algorithm = 0 SUBFIND: Number of processors used in different partitions for the collective SubFind code = 0 SUBFIND: (The adopted size-limit for the collective algorithm was 134135580 particles, for threshold size factor 0.6) SUBFIND: The other 553138 FOF halos are treated in parallel with serial code SUBFIND: subfind_distribute_groups() took 0.0031939 sec SUBFIND: particle balance=1.12116 SUBFIND: subfind_exchange() took 0.239956 sec SUBFIND: particle balance for processing=1.00125 SUBFIND: subdomain decomposition took 0.0512866 sec SUBFIND: serial subfind subdomain decomposition took 0.050911 sec SUBFIND: subfind_hbt_single_group() processing for Ngroups=641 took 8.68444 sec SUBFIND: root-task=0: Serial processing of halo 0 took 8.80906 SUBFIND: Processing overall took (total time=8.96321 sec) SUBFIND: 0 out of 68964 decisions, fraction 0, where influenced by previous subhalo size ALLOCATE: Changing to MaxPart = 258751 ALLOCATE: Changing to MaxPartSph = 127065 SUBFIND: subfind_exchange() (for return to original CPU) took 0.265754 sec TREE: Full tree construction for all particles. (presently allocated=80.8594 MB) GRAVTREE: Tree construction done. took 0.74646 sec =73792.8 NTopnodes=36985 NTopleaves=32362 tree-build-scalability=0.499379 SUBFIND: SO iteration 1: need to repeat for 553138 halo centers. (took 0.0144579 sec) SUBFIND: SO iteration 2: need to repeat for 553138 halo centers. (took 0.0136089 sec) SUBFIND: SO iteration 3: need to repeat for 553138 halo centers. (took 0.0133233 sec) SUBFIND: SO iteration 4: need to repeat for 553138 halo centers. (took 0.0131241 sec) SUBFIND: SO iteration 5: need to repeat for 553138 halo centers. (took 0.0130234 sec) SUBFIND: SO iteration 6: need to repeat for 553138 halo centers. (took 0.0129981 sec) SUBFIND: SO iteration 7: need to repeat for 553138 halo centers. (took 0.012979 sec) SUBFIND: SO iteration 8: need to repeat for 553138 halo centers. (took 0.0132092 sec) SUBFIND: SO iteration 9: need to repeat for 553138 halo centers. (took 0.0131739 sec) SUBFIND: SO iteration 10: need to repeat for 553138 halo centers. (took 0.0129445 sec) SUBFIND: SO iteration 11: need to repeat for 553138 halo centers. (took 0.0129806 sec) SUBFIND: SO iteration 12: need to repeat for 553138 halo centers. (took 0.0129396 sec) SUBFIND: SO iteration 13: need to repeat for 553138 halo centers. (took 0.0130135 sec) SUBFIND: SO iteration 14: need to repeat for 553138 halo centers. (took 0.0128918 sec) SUBFIND: SO iteration 15: need to repeat for 553138 halo centers. (took 0.0129898 sec) SUBFIND: SO iteration 16: need to repeat for 7936 halo centers. (took 0.0128675 sec) SUBFIND: SO iteration 17: need to repeat for 23 halo centers. (took 0.000812089 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000213817 sec) SUBFIND: SO iteration 1: need to repeat for 553138 halo centers. (took 0.0129168 sec) SUBFIND: SO iteration 2: need to repeat for 553138 halo centers. (took 0.0127984 sec) SUBFIND: SO iteration 3: need to repeat for 553138 halo centers. (took 0.012827 sec) SUBFIND: SO iteration 4: need to repeat for 553138 halo centers. (took 0.0129774 sec) SUBFIND: SO iteration 5: need to repeat for 553138 halo centers. (took 0.0128596 sec) SUBFIND: SO iteration 6: need to repeat for 553138 halo centers. (took 0.0130725 sec) SUBFIND: SO iteration 7: need to repeat for 553138 halo centers. (took 0.0128935 sec) SUBFIND: SO iteration 8: need to repeat for 553138 halo centers. (took 0.0130589 sec) SUBFIND: SO iteration 9: need to repeat for 553138 halo centers. (took 0.0128817 sec) SUBFIND: SO iteration 10: need to repeat for 553138 halo centers. (took 0.01298 sec) SUBFIND: SO iteration 11: need to repeat for 553138 halo centers. (took 0.0128678 sec) SUBFIND: SO iteration 12: need to repeat for 553138 halo centers. (took 0.0129966 sec) SUBFIND: SO iteration 13: need to repeat for 553138 halo centers. (took 0.0128804 sec) SUBFIND: SO iteration 14: need to repeat for 553138 halo centers. (took 0.01296 sec) SUBFIND: SO iteration 15: need to repeat for 553138 halo centers. (took 0.0128548 sec) SUBFIND: SO iteration 16: need to repeat for 3678 halo centers. (took 0.0127943 sec) SUBFIND: SO iteration 17: need to repeat for 10 halo centers. (took 0.000474352 sec) SUBFIND: SO iteration 18: need to repeat for 1 halo centers. (took 0.000215139 sec) SUBFIND: SO iteration 1: need to repeat for 553138 halo centers. (took 0.0133545 sec) SUBFIND: SO iteration 2: need to repeat for 553138 halo centers. (took 0.0133686 sec) SUBFIND: SO iteration 3: need to repeat for 553138 halo centers. (took 0.0131244 sec) SUBFIND: SO iteration 4: need to repeat for 553138 halo centers. (took 0.0130593 sec) SUBFIND: SO iteration 5: need to repeat for 553138 halo centers. (took 0.0130041 sec) SUBFIND: SO iteration 6: need to repeat for 553138 halo centers. (took 0.0129446 sec) SUBFIND: SO iteration 7: need to repeat for 553138 halo centers. (took 0.0130696 sec) SUBFIND: SO iteration 8: need to repeat for 553138 halo centers. (took 0.0128943 sec) SUBFIND: SO iteration 9: need to repeat for 553138 halo centers. (took 0.0130271 sec) SUBFIND: SO iteration 10: need to repeat for 553138 halo centers. (took 0.0129203 sec) SUBFIND: SO iteration 11: need to repeat for 553138 halo centers. (took 0.0132677 sec) SUBFIND: SO iteration 12: need to repeat for 553138 halo centers. (took 0.0131066 sec) SUBFIND: SO iteration 13: need to repeat for 553138 halo centers. (took 0.0132038 sec) SUBFIND: SO iteration 14: need to repeat for 553138 halo centers. (took 0.0133725 sec) SUBFIND: SO iteration 15: need to repeat for 553138 halo centers. (took 0.0131375 sec) SUBFIND: SO iteration 16: need to repeat for 8078 halo centers. (took 0.0134449 sec) SUBFIND: SO iteration 17: need to repeat for 23 halo centers. (took 0.000761315 sec) SUBFIND: SO iteration 18: need to repeat for 2 halo centers. (took 0.000211721 sec) SUBFIND: SO iteration 1: need to repeat for 553138 halo centers. (took 0.0130589 sec) SUBFIND: SO iteration 2: need to repeat for 553138 halo centers. (took 0.0134604 sec) SUBFIND: SO iteration 3: need to repeat for 553138 halo centers. (took 0.013298 sec) SUBFIND: SO iteration 4: need to repeat for 553138 halo centers. (took 0.0134798 sec) SUBFIND: SO iteration 5: need to repeat for 553138 halo centers. (took 0.0133448 sec) SUBFIND: SO iteration 6: need to repeat for 553138 halo centers. (took 0.0133968 sec) SUBFIND: SO iteration 7: need to repeat for 553138 halo centers. (took 0.0135368 sec) SUBFIND: SO iteration 8: need to repeat for 553138 halo centers. (took 0.0132758 sec) SUBFIND: SO iteration 9: need to repeat for 553138 halo centers. (took 0.0131921 sec) SUBFIND: SO iteration 10: need to repeat for 553138 halo centers. (took 0.0133247 sec) SUBFIND: SO iteration 11: need to repeat for 553138 halo centers. (took 0.0132374 sec) SUBFIND: SO iteration 12: need to repeat for 553138 halo centers. (took 0.0134752 sec) SUBFIND: SO iteration 13: need to repeat for 553138 halo centers. (took 0.0131911 sec) SUBFIND: SO iteration 14: need to repeat for 553138 halo centers. (took 0.0132085 sec) SUBFIND: SO iteration 15: need to repeat for 553138 halo centers. (took 0.0131086 sec) SUBFIND: SO iteration 16: need to repeat for 319592 halo centers. (took 0.0133075 sec) SUBFIND: SO iteration 17: need to repeat for 6885 halo centers. (took 0.00992985 sec) SUBFIND: SO iteration 18: need to repeat for 107 halo centers. (took 0.000652205 sec) SUBFIND: determining spherical overdensity masses took 0.856052 sec SUBFIND: assembled and ordered groups and subhalos (took 0.228472 sec) FOF/SUBFIND: writing group catalogue file: 'output/fof_subhalo_tab_066' (file 1 of 1) FOF/SUBFIND: writing group catalogue block 0 (GroupLen)... FOF/SUBFIND: writing group catalogue block 1 (GroupMass)... FOF/SUBFIND: writing group catalogue block 2 (GroupPos)... FOF/SUBFIND: writing group catalogue block 3 (GroupVel)... FOF/SUBFIND: writing group catalogue block 4 (GroupLenType)... FOF/SUBFIND: writing group catalogue block 5 (GroupOffsetType)... FOF/SUBFIND: writing group catalogue block 6 (GroupMassType)... FOF/SUBFIND: writing group catalogue block 7 (GroupAscale)... FOF/SUBFIND: writing group catalogue block 8 (Group_M_Mean200)... FOF/SUBFIND: writing group catalogue block 9 (Group_R_Mean200)... FOF/SUBFIND: writing group catalogue block 10 (Group_M_Crit200)... FOF/SUBFIND: writing group catalogue block 11 (Group_R_Crit200)... FOF/SUBFIND: writing group catalogue block 12 (Group_M_Crit500)... FOF/SUBFIND: writing group catalogue block 13 (Group_R_Crit500)... FOF/SUBFIND: writing group catalogue block 14 (Group_M_TopHat200)... FOF/SUBFIND: writing group catalogue block 15 (Group_R_TopHat200)... FOF/SUBFIND: writing group catalogue block 16 (GroupNsubs)... FOF/SUBFIND: writing group catalogue block 17 (GroupFirstSub)... FOF/SUBFIND: writing group catalogue block 18 (SubhaloGroupNr)... FOF/SUBFIND: writing group catalogue block 19 (SubhaloRankInGr)... FOF/SUBFIND: writing group catalogue block 20 (SubhaloLen)... FOF/SUBFIND: writing group catalogue block 21 (SubhaloMass)... FOF/SUBFIND: writing group catalogue block 22 (SubhaloPos)... FOF/SUBFIND: writing group catalogue block 23 (SubhaloVel)... FOF/SUBFIND: writing group catalogue block 24 (SubhaloLenType)... FOF/SUBFIND: writing group catalogue block 25 (SubhaloOffsetType)... FOF/SUBFIND: writing group catalogue block 26 (SubhaloMassType)... FOF/SUBFIND: writing group catalogue block 27 (SubhaloCM)... FOF/SUBFIND: writing group catalogue block 28 (SubhaloSpin)... FOF/SUBFIND: writing group catalogue block 29 (SubhaloVelDisp)... FOF/SUBFIND: writing group catalogue block 30 (SubhaloVmax)... FOF/SUBFIND: writing group catalogue block 31 (SubhaloVmaxRad)... FOF/SUBFIND: writing group catalogue block 32 (SubhaloHalfmassRad)... FOF/SUBFIND: writing group catalogue block 33 (SubhaloHalfmassRadType)... FOF/SUBFIND: writing group catalogue block 34 (SubhaloIDMostbound)... FOF/SUBFIND: writing group catalogue block 35 (SubhaloParentRank)... FOF/SUBFIND: Group catalogues saved. took = 4.79298 sec, total size 220.97 MB, corresponds to effective I/O rate of 46.1028 MB/sec SUBFIND: Subgroup catalogues saved. took = 4.79399 sec SUBFIND: Finished with SUBFIND. (total time=26.5907 sec) SUBFIND: Total number of subhalos with at least 20 particles: 621996 SUBFIND: Largest subhalo has 248 particles/cells. SUBFIND: Total number of particles/cells in subhalos: 134135564 FOF: preparing output order of particles took 0.869727 sec SNAPSHOT: writing snapshot file #66 @ time 0.1 ... SNAPSHOT: writing snapshot file: 'output/snap_066' (file 1 of 1) SNAPSHOT: writing snapshot rename 'output/snap_066.hdf5' to 'output/bak-snap_066.hdf5' SNAPSHOT: writing snapshot block 0 (Coordinates)... SNAPSHOT: writing snapshot block 1 (Velocities)... SNAPSHOT: writing snapshot block 2 (ParticleIDs)... SNAPSHOT: writing snapshot block 3 (Masses)... SNAPSHOT: writing snapshot block 4 (InternalEnergy)... SNAPSHOT: writing snapshot block 5 (Density)... SNAPSHOT: writing snapshot block 6 (SmoothingLength)... SNAPSHOT: done with writing snapshot. Took 9.64075 sec, total size 5359 MB, corresponds to effective I/O rate of 555.87 MB/sec endrun called, calling MPI_Finalize() bye! Abort(806969615) on node 793 (rank 793 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 854 (rank 854 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 649 (rank 649 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) Abort(806969615) on node 656 (rank 656 in comm 0): Fatal error in PMPI_Finalize: Other MPI error, error stack: PMPI_Finalize(214)...............: MPI_Finalize failed PMPI_Finalize(159)...............: MPID_Finalize(1288)..............: MPIDI_OFI_mpi_finalize_hook(1892): OFI domain close failed (ofi_init.c:1892:MPIDI_OFI_mpi_finalize_hook:Device or resource busy) TACC: MPI job exited with code: 15 TACC: Shutdown complete. Exiting.