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(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/epstopdf-sys.cfg File: epstopdf-sys.cfg 2010/07/13 v1.3 Configuration of (r)epstopdf for TeX Liv e )) \AtBeginShipoutBox=\box27 Package hyperref Info: Link coloring ON on input line 7. (/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/nameref.sty Package: nameref 2012/10/27 v2.43 Cross-referencing by name of section (/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/gettitlestring.sty Package: gettitlestring 2010/12/03 v1.4 Cleanup title references (HO) ) \c@section@level=\count104 ) LaTeX Info: Redefining \ref on input line 7. LaTeX Info: Redefining \pageref on input line 7. LaTeX Info: Redefining \nameref on input line 7. (./README.out) (./README.out) \@outlinefile=\write3 \openout3 = `README.out'. LaTeX Font Info: Try loading font information for TS1+fnc on input line 10. 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(./README.toc LaTeX Font Info: Font shape `T1/fnc/bx/n' in size <12> not available (Font) Font shape `T1/fnc/b/n' tried instead on input line 1. LaTeX Font Info: Font shape `T1/fnc/b/n' will be (Font) scaled to size 11.15991pt on input line 1. ) \tf@toc=\write4 \openout4 = `README.toc'. LaTeX Font Info: Font shape `T1/fnc/m/n' will be (Font) scaled to size 13.39188pt on input line 31. LaTeX Font Info: Font shape `T1/fnc/bx/n' in size <14.4> not available (Font) Font shape `T1/fnc/b/n' tried instead on input line 31. LaTeX Font Info: Font shape `T1/fnc/b/n' will be (Font) scaled to size 13.39188pt on input line 31. Overfull \hbox (14.93515pt too wide) in paragraph at lines 32--34 \T1/fnc/m/n/12 ([][]$\T1/cmtt/m/n/12 https : / / bitbucket . org / gfcstanford / rockstar$[][]\T1/fnc/m/n/12 ), run-ning is es-pe-cially easy. [] [1 {/usr/local/texlive/2013/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] Overfull \hbox (48.31796pt too wide) in paragraph at lines 40--40 []\T1/cmtt/m/n/12 prompt> perl /path/to/rockstar/scripts/gen_merger_cfg.pl [] [] Overfull \hbox (23.624pt too wide) in paragraph at lines 58--58 []\T1/cmtt/m/n/12 #ID DescID Mass Vmax Vrms Radius Rs Np X Y Z VX VY VZ JX JY J Z Spin[] [] [2] Overfull \hbox (5.08093pt too wide) in paragraph at lines 82--84 []\T1/cmtt/m/n/12 JX\T1/fnc/m/n/12 /\T1/cmtt/m/n/12 JY\T1/fnc/m/n/12 /\T1/cmtt/ m/n/12 JZ\T1/fnc/m/n/12 : 3D an-gu-lar mo-men-tum of the halo, in units of (M$[ ]$/h) * (Mpc/h) [] LaTeX Font Info: Font shape `T1/fnc/m/n' will be (Font) scaled to size 5.57996pt on input line 91. Overfull \hbox (43.39417pt too wide) in paragraph at lines 99--99 []\T1/cmtt/m/n/6 165 305 6.1824e+10 210.91 213.66 106.167 13.025 49 63.97294 10 0.14336 36.89451 78.44 82.65 117.79 3.852e+09 9.976e+08 -9.825e+09 0.14646[] [] Overfull \hbox (46.58089pt too wide) in paragraph at lines 99--99 []\T1/cmtt/m/n/6 166 307 9.3673e+09 100.62 108.34 56.599 14.260 34 28.23423 88. 26684 27.98982 -42.16 112.89 61.36 -2.751e+08 -8.645e+07 -1.513e+08 0.10760[] [] Overfull \hbox (46.58089pt too wide) in paragraph at lines 99--99 []\T1/cmtt/m/n/6 167 309 1.4988e+10 119.98 127.34 66.199 14.129 22 30.63638 101 .30433 25.59135 64.70 106.94 115.71 -5.153e+08 8.236e+08 -9.118e+07 0.16328[] [] Overfull \hbox (37.02072pt too wide) in paragraph at lines 99--99 []\T1/cmtt/m/n/6 168 310 2.4355e+10 135.83 144.66 77.827 24.273 22 98.15601 12. 42515 30.58211 58.75 31.41 66.24 -9.074e+08 6.611e+08 -9.837e+08 0.05737[] [] Overfull \hbox (37.02072pt too wide) in paragraph at lines 99--99 []\T1/cmtt/m/n/6 3 -1 3.7469e+09 73.56 139.43 41.702 11.390 36 12.10802 0.52037 157.83209 -57.47 -11.73 -119.23 -1.918e+08 -4.043e+07 5.996e+08 1.72959[] [] [3] Overfull \hbox (29.79749pt too wide) in paragraph at lines 131--131 []\T1/cmtt/m/n/12 EXTRA_PARAM_DESCRIPTIONS = "#Desc of column 1\n#Desc of colum n 2..."[] [] Overfull \hbox (5.16162pt too wide) in paragraph at lines 139--149 \T1/fnc/m/n/12 This should be a list of char-ac-ters, one per ex-tra pa-ram-e-t er, to spec-ify whether [] Overfull \hbox (103.8794pt too wide) in paragraph at lines 156--156 []\T1/cmtt/m/n/12 prompt> /path/to/consistent/trees/convert_format merger_tree .cfg out_0.list ...[] [] [4] LaTeX Font Info: Font shape `T1/fnc/m/n' will be (Font) scaled to size 10.18341pt on input line 164. Overfull \hbox (22.90831pt too wide) in paragraph at lines 157--165 \T1/fnc/m/n/12 have to spec-ify ``\T1/cmtt/m/n/12 INPUT_FORMAT = BINARY\T1/fnc/ m/n/12 '' in the con-fig file. The \T1/cmtt/m/n/12 convert_format [] Overfull \hbox (85.30316pt too wide) in paragraph at lines 167--167 []\T1/cmtt/m/n/10.95 prompt> /path/to/consistent/trees/convert_format merger_t ree.cfg out_0.list.bin ...[] [] Overfull \hbox (6.17622pt too wide) in paragraph at lines 174--176 \T1/fnc/m/n/12 It's best to copy one of the ex-am-ple scripts al-ready pro-vide d (e.g., \T1/cmtt/m/n/12 bolshoi.cfg [] Overfull \hbox (35.97098pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 BOX_DIVISIONS = 5 # For large sims, putting all the halos in one tree[] [] Overfull \hbox (54.49146pt too wide) in paragraph at lines 224--224 [] \T1/cmtt/m/n/12 # file gets too unwieldy. If BOX_DIVISIONS is larger t han 1, then[] [] Overfull \hbox (5.10352pt too wide) in paragraph at lines 224--224 [] \T1/cmtt/m/n/12 # the trees will be split into BOX_DIVISIONS^3 files, e ach[] [] Overfull \hbox (11.27701pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 INBASE = "/path/to/halo/catalog/directory" #Where out_*.list are.[] [] [5] Overfull \hbox (60.66495pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #The last three directories are for storing the outputs of th e tree code.[] [] Overfull \hbox (42.14447pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #The "OUTBASE" will contain intermediate calculations, statis tics, and[] [] Overfull \hbox (54.49146pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #detailed logfiles about which halos are created or destroyed (and why).[] [] Overfull \hbox (42.14447pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #These files can occupy a significant amount of space, on the order of[] [] Overfull \hbox (42.14447pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 MASS_RES_OK=1e11 #Halo mass at which there are at least 1000 particles[] [] Overfull \hbox (35.97098pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #These options set the number of timesteps over which the hal o has to[] [] Overfull \hbox (54.49146pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #Generally, MIN_TIMESTEPS_TRACKED should be set to 1/30 of th e number of[] [] Overfull \hbox (54.49146pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 # timesteps, and MIN_TIMESTEPS_SUB_* should be set to 1/15 th e number of[] [] Overfull \hbox (42.14447pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 # timesteps; these limits are a good balance between catching spurious[] [] Overfull \hbox (48.31796pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 # halos but also allowing for halos which merge soon after th ey appear.[] [] Overfull \hbox (29.79749pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #Option for applying fix for Rockstar spins (only for version s prior[] [] Overfull \hbox (79.18542pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #to Rockstar v0.99.9-RC3). Set to 0-indexed column of T/|U| in EXTRA_PARAMS[] [] Overfull \hbox (5.10352pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #E.g., if EXTRA_PARAM_LABELS is "Spin_bullock M200c T/|U|", t hen[] [] Overfull \hbox (91.53241pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #Option to limit memory usage; set to 1 if calculating merger tree for a large[] [] Overfull \hbox (91.53241pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #(>2048^3 particles) box. This turns off gzipping intermedia te files and also[] [] Overfull \hbox (66.83844pt too wide) in paragraph at lines 224--224 []\T1/cmtt/m/n/12 #limits some parallelization to avoid having too many snapsho ts in memory.[] [] [6] Overfull \hbox (73.01193pt too wide) in paragraph at lines 255--255 []\T1/cmtt/m/n/12 Error: too few halos at scale factor 0.XYZ to calculate consi stency metric.[] [] Overfull \hbox (73.01193pt too wide) in paragraph at lines 255--255 []\T1/cmtt/m/n/12 Please remove this and all earlier timesteps from the scale f ile and rerun.[] [] [7] Overfull \hbox (14.01704pt too wide) in paragraph at lines 289--296 \T1/fnc/m/n/12 umn for M$[]$ in \T1/cmtt/m/n/12 EXTRA_PARAMS\T1/fnc/m/n/12 . E. g., if \T1/cmtt/m/n/12 EXTRA_PARAM_LABELS \T1/fnc/m/n/12 is ``\T1/cmtt/m/n/12 S pin_bullock [] [8] Package atveryend Info: Empty hook `BeforeClearDocument' on input line 315. [9] Package atveryend Info: Empty hook `AfterLastShipout' on input line 315. 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